Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g14420 | OGI:03021050 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:7840807-7843174 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATTTACCTGAAATTTGTCATCTTTTTTGCAAAGATGCCCATATTATTTTCACCACTGTTTTTAACTGGGTTTTCTACCATTTCCGACCTTACTGATTTCAGGTGGTTCGGTCAGTGAACATCAGAAACAAGTGTTGATCGGCCGGTAATTTTTGTGTACGGTTTTTATACATAGTCAAATTGGTGTAGCAATAGCTTGGAGGGGCGTAGCCAACGTCATTACGATCCCAAATTTCTCCTCCATGTTCACCCCGTTCCTCTCAACCTCCGGCAGAAGCCTCCACTCAAACCGGTGCAGCAACGATGCGAGCATCAGATGCACCATGCGAACAGCCAGCGGCAACCCGGGACAGATCCTTCGGCCGGAGCCAAATGGAATCAGCTCGAAGTCGCGACCACGGAAATCCACCTCTTTCTGCAGGAACCTCTCCGGGATGAACTTGTCAGGCTCAAACCACACCTTGCTATCTCGGCCAATCGCCCAAATATTCACCATAACGGTCGCGCCCTTGGGCACCGTGTAGCCTCCGATCTCTGTGTCCGTCTCGGCTCGGTGAGAGAGCAGCAACGGCGCGGGAGGATGGAGCCGGAAAGTCTCTTTCACGACGGCCTGAAGGTACTCGAGGCTGTCGATGTCGGATTCGTCGATTTCTGGTTTGGAGCCAATCACTCGAGTAAGCTCCTCCCGAGCTTTCATCATGGATGATGGGCTTTGTAGCAGCTGAGCCATTGCCCATTCTACAGTTACCGCGCTTGTATCACTCCCCGCGCTAAACAAATCCTACCAAAAAATACCCAGACATAAGTCAGATAATTTCATATTTGCACTTACACTTACCAGTGGTTAGCTACACTACTTCAAGAGTGCAACTCTCTCGTTTGCCGTGGCCATCGCAGTCGCAATGACACCCACGTTAAGGTTAAGGTCTGTTTGGAGAGCTTAAAATTCTAAGAAACAATTAGTTGATAGCAGCTTTTGAAAACATAGAAAAACTGGGTTTATCAGCTTCTGACTTCTATTCATTTTCTGGTTTATATAACTACAGTTTCTCATAATCTAAAAAAAAGCTGAACCGTTTAGGAAGCTTCCGATTCTGAAAAAAGTTGTAGCAACTATAAGCTCCCTAAACAGAGATGGAGATAAGGAGAGCACCAGAGCTGACCAATGAGAATGAGCTAAAACGCTATTGCCAACTCACAATCTAAAACAGTGTTCGGGAGGTGGAGCACATGAAAACTTGGTGGTTTATTAATGGTTAATTAACTAAGTATTAGCTATAAATAATTTAAAAAAGAATTAATATAATTTTTTAAACCACTTTCGTATAGAAATTTTTTGTAAAATTACAACATTCAATAATTTAAAAAGCGTGCATACGGATAACGAGACATATGAGTTGGAAAAGTAAAGAAAAAAACTCGGCCTAATATACCGGTATACCGTAAACCGTGACCGTAGCGTTTGCCGGTCGAACTGCCGGCCATCCTCCGTCGTGCGGTAGTCGAGCAGCACGTCCAGGAAGTCGTTCTTGGGCGGCTCACCCGCGTCGCGCTCCCGCATGCGCCGCTCGATCTGCTCGTCGAACTCAGCGAACAGTCGCGTGAACACCCTCGACAGCCACCTCCGCAGCCGCTGCGGGTCGAACGCCGCGACCGCCGGGAAGTAGTCCACCACGTTCGGGACACCGACGGTGCCCGCGAACTCTGCGACCGTGTCCGCTAACTCCCCCGCCGATCCGGCGCGTCCCTCGTCGAGGTCGGCGAGGTCGGCCGAGAACAGCGTGCAGGAGAGCATGTTCAGCAAGGTCGTGAACACGACGCGGCGGACGTCGACGGCCGCGCCCTCGCGCGCCATCCTCGCGACGTGCGACACGAGCCGGCGCGCCTTCTCGCGGCGGAGGCGCTGCTGCGCGTCGAGGCGGCGCGGCGCGAAGAGCTCCGCGGAGCACACCTTGCGGAGGGCGCGCCACTGGGGGCTGCTGGGAGGGAGCCAGGGCATGGCAAACCTGTCGTGCCCGCACGCCCGGACGATGTCCGGAACAGGGCGCGTCGAGAAGGCGGCGTCGTGGCGCTGGAGGATGTCTCGGGCGGCGTCCGGTGAGGACGCGACGATGGTGGTGACGGCGCCGAGGCGGAGCGTCATGAGCGGGCCGTGGCGCTCCGCGAGGCGTGCCAGGGAGCGGTGTGGCTTGGCACCGAGCTCGAGGAGGTTGCCGACGAGCGGCAGCGGGCGGGGACCCGGCGGCAGGTTGCGGCGAGCGTCAGAGAAGAGCCGGAGAAGGTACAGGGAGGAGACGAGGAGAATAACACACGGCGCATACAGGAGCAGGAGCTCCATGATTGACCGTACAAATGTGTGCTTACTGCT
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| CDS seq | ATGGAGCTCCTGCTCCTGTATGCGCCGTGTGTTATTCTCCTCGTCTCCTCCCTGTACCTTCTCCGGCTCTTCTCTGACGCTCGCCGCAACCTGCCGCCGGGTCCCCGCCCGCTGCCGCTCGTCGGCAACCTCCTCGAGCTCGGTGCCAAGCCACACCGCTCCCTGGCACGCCTCGCGGAGCGCCACGGCCCGCTCATGACGCTCCGCCTCGGCGCCGTCACCACCATCGTCGCGTCCTCACCGGACGCCGCCCGAGACATCCTCCAGCGCCACGACGCCGCCTTCTCGACGCGCCCTGTTCCGGACATCGTCCGGGCGTGCGGGCACGACAGGTTTGCCATGCCCTGGCTCCCTCCCAGCAGCCCCCAGTGGCGCGCCCTCCGCAAGGTGTGCTCCGCGGAGCTCTTCGCGCCGCGCCGCCTCGACGCGCAGCAGCGCCTCCGCCGCGAGAAGGCGCGCCGGCTCGTGTCGCACGTCGCGAGGATGGCGCGCGAGGGCGCGGCCGTCGACGTCCGCCGCGTCGTGTTCACGACCTTGCTGAACATGCTCTCCTGCACGCTGTTCTCGGCCGACCTCGCCGACCTCGACGAGGGACGCGCCGGATCGGCGGGGGAGTTAGCGGACACGGTCGCAGAGTTCGCGGGCACCGTCGGTGTCCCGAACGTGGTGGACTACTTCCCGGCGGTCGCGGCGTTCGACCCGCAGCGGCTGCGGAGGTGGCTGTCGAGGGTGTTCACGCGACTGTTCGCTGAGTTCGACGAGCAGATCGAGCGGCGCATGCGGGAGCGCGACGCGGGTGAGCCGCCCAAGAACGACTTCCTGGACGTGCTGCTCGACTACCGCACGACGGAGGATGGCCGGCAGTTCGACCGGCAAACGCTACGGTCACGGTTTACGGATTTGTTTAGCGCGGGGAGTGATACAAGCGCGGTAACTGTAGAATGGGCAATGGCTCAGCTGCTACAAAGCCCATCATCCATGATGAAAGCTCGGGAGGAGCTTACTCGAGTGATTGGCTCCAAACCAGAAATCGACGAATCCGACATCGACAGCCTCGAGTACCTTCAGGCCGTCGTGAAAGAGACTTTCCGGCTCCATCCTCCCGCGCCGTTGCTGCTCTCTCACCGAGCCGAGACGGACACAGAGATCGGAGGCTACACGGTGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGTGGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTGGTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGCTGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTATTGCTACACCAATTTGA
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| Protein seq | MELLLLYAPCVILLVSSLYLLRLFSDARRNLPPGPRPLPLVGNLLELGAKPHRSLARLAERHGPLMTLRLGAVTTIVASSPDAARDILQRHDAAFSTRPVPDIVRACGHDRFAMPWLPPSSPQWRALRKVCSAELFAPRRLDAQQRLRREKARRLVSHVARMAREGAAVDVRRVVFTTLLNMLSCTLFSADLADLDEGRAGSAGELADTVAEFAGTVGVPNVVDYFPAVAAFDPQRLRRWLSRVFTRLFAEFDEQIERRMRERDAGEPPKNDFLDVLLDYRTTEDGRQFDRQTLRSRFTDLFSAGSDTSAVTVEWAMAQLLQSPSSMMKAREELTRVIGSKPEIDESDIDSLEYLQAVVKETFRLHPPAPLLLSHRAETDTEIGGYTVPKGATVMVNIWAIGRDSKVWFEPDKFIPERFLQKEVDFRGRDFELIPFGSGRRICPGLPLAVRMVHLMLASLLHRFEWRLLPEVERNGVNMEEKFGIVMTLATPLQAIATPI |
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| Function | Geraniol 8-hydroxylase [UniProtKB/Swiss-Prot:Q8VWZ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g14420 | LOC_Os03g14420.1 | Chr03 | 7840807 | 7843174 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGCTCCTGCTCCTGTATGCGCCGTGTGTTATTCTCCTCGTCTCCTCCCTGTACCTTCTCCGGCTCTTCTCTGACGCTCGCCGCAACCTGCCGCCGGGTCCCCGCCCGCTGCCGCTCGTCGGCAACCTCCTCGAGCTCGGTGCCAAGCCACACCGCTCCCTGGCACGCCTCGCGGAGCGCCACGGCCCGCTCATGACGCTCCGCCTCGGCGCCGTCACCACCATCGTCGCGTCCTCACCGGACGCCGCCCGAGACATCCTCCAGCGCCACGACGCCGCCTTCTCGACGCGCCCTGTTCCGGACATCGTCCGGGCGTGCGGGCACGACAGGTTTGCCATGCCCTGGCTCCCTCCCAGCAGCCCCCAGTGGCGCGCCCTCCGCAAGGTGTGCTCCGCGGAGCTCTTCGCGCCGCGCCGCCTCGACGCGCAGCAGCGCCTCCGCCGCGAGAAGGCGCGCCGGCTCGTGTCGCACGTCGCGAGGATGGCGCGCGAGGGCGCGGCCGTCGACGTCCGCCGCGTCGTGTTCACGACCTTGCTGAACATGCTCTCCTGCACGCTGTTCTCGGCCGACCTCGCCGACCTCGACGAGGGACGCGCCGGATCGGCGGGGGAGTTAGCGGACACGGTCGCAGAGTTCGCGGGCACCGTCGGTGTCCCGAACGTGGTGGACTACTTCCCGGCGGTCGCGGCGTTCGACCCGCAGCGGCTGCGGAGGTGGCTGTCGAGGGTGTTCACGCGACTGTTCGCTGAGTTCGACGAGCAGATCGAGCGGCGCATGCGGGAGCGCGACGCGGGTGAGCCGCCCAAGAACGACTTCCTGGACGTGCTGCTCGACTACCGCACGACGGAGGATGGCCGGCAGTTCGACCGGCAAACGCTACGGTCACGGTTTACGGATTTGTTTAGCGCGGGGAGTGATACAAGCGCGGTAACTGTAGAATGGGCAATGGCTCAGCTGCTACAAAGCCCATCATCCATGATGAAAGCTCGGGAGGAGCTTACTCGAGTGATTGGCTCCAAACCAGAAATCGACGAATCCGACATCGACAGCCTCGAGTACCTTCAGGCCGTCGTGAAAGAGACTTTCCGGCTCCATCCTCCCGCGCCGTTGCTGCTCTCTCACCGAGCCGAGACGGACACAGAGATCGGAGGCTACACGGTGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGTGGTTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTGGTCGCGACTTCGAGCTGATTCCATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGCTGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGCACCGGTTTGAGTGGAGGCTTCTGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGACGTTGGCTACGCCCCTCCAAGCTATTGCTACACCAATTTGA
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| Protein seq | MELLLLYAPCVILLVSSLYLLRLFSDARRNLPPGPRPLPLVGNLLELGAKPHRSLARLAERHGPLMTLRLGAVTTIVASSPDAARDILQRHDAAFSTRPVPDIVRACGHDRFAMPWLPPSSPQWRALRKVCSAELFAPRRLDAQQRLRREKARRLVSHVARMAREGAAVDVRRVVFTTLLNMLSCTLFSADLADLDEGRAGSAGELADTVAEFAGTVGVPNVVDYFPAVAAFDPQRLRRWLSRVFTRLFAEFDEQIERRMRERDAGEPPKNDFLDVLLDYRTTEDGRQFDRQTLRSRFTDLFSAGSDTSAVTVEWAMAQLLQSPSSMMKAREELTRVIGSKPEIDESDIDSLEYLQAVVKETFRLHPPAPLLLSHRAETDTEIGGYTVPKGATVMVNIWAIGRDSKVWFEPDKFIPERFLQKEVDFRGRDFELIPFGSGRRICPGLPLAVRMVHLMLASLLHRFEWRLLPEVERNGVNMEEKFGIVMTLATPLQAIATPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.179272 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0248300 | RBH | 0.0 | 0.000000 | 0.928019 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g14400 | RBH | 2.293866 | 2.788053 | 1.452743 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0248300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0010930 | SBH | 0.854844 | 2.048354 | 1.622214 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0010800 | SBH | 0.422870 | 0.882339 | 0.556852 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0010780 | RBH | 0.453909 | 0.000000 | 4.121787 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0010770 | RBH | 0.294345 | 0.067571 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0010640 | SBH | 9.022459 | 1.134765 | 7.228286 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0130800 | SBH | 6.648747 | 5.5154475 | 1.218563 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0010530 | SBH | 0.484929 | 0.051098 | 0.550380 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0131600 | RBH | 1.5573545 | 1.421646 | 0.0226965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0010690 | SBH | 0.173181 | 0.119660 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0010760 | SBH | 0.615353 | 1.001354 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0010740 | SBH | 6.025359 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0010720 | RBH | 0.214843 | 0.000000 | 0.718571 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010640 | SBH | 0.349981 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G010620 | SBH | 0.799112 | 0.0 | 1.365223 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010500 | SBH | 1.635241 | 2.561093 | 3.423182 |
