Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g10420 | OGI:03014400 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:5304975-5307365 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACACCCCGCCGTCCGCCGCCGCCGCCACCGCCACCGCCGTTGCGTCAGACTCTGATTGCGACTCCGCGCTCGTCGCCGACGTGGCGGAAGCGCTCGTGTCGGCGTCCCGCCTGCCGGAGCCGCCGCCTATCCCCGCCCTCCTCGCCCTCTACCTCCCGCGCCTCGCCGCCTCCCACCACCCGCGCGTGCTCTCCCTCGCCGCCTCCCACCCGGGGCTCGCCTCGCCGGACCTGCTCCTCGCCTACCGCCGCCACCTCTCGCCGCCCTCCTGCCTCCCCTCCCTCGTCCCGCTCCTCCCCGTCCTCCCCTACCGCCACCTCCTCCCGCTCCTCCTCTCCTTCGTCCCGCTCGACCCGCTTCGCCACCTCCACCGCCACCTCCTCGCGCACCTCCCCACGAGTCCCCTCGCCGATGCCGCGCTCTCCGCCTACGCCCGCCTCCGCCTCCCCCACCTCGCCGCCCAGCTCCTCCACTCCCTCCGCCGCCGCCGTGGCGTTCGCCCTTCCCTCCAGGCTGCCAACGCCGTCCTCTCCGCGCTTTCGCGCAGCCCATCCACCTTGCCGCAGGCCTCCCTCGATGTCTTCCGCTCCCTCATCGAGCTCCGCCTCCACCCCAACCACTACACCTTCAACCTCCTCGTCCACACGCATTGCTCCAAGGGCACCCTCGCCGACGCTCTCGCCACGCTCTCCACCATGCAGGGGTTCGGCCTCTCCCCCGATGCCGTCACCTACAACACGCTCCTCAATGCGCACTGCCGGAAGGGCATGCTCGGCGAGGCCCGGGCACTGCTGGCGAGGATGAAGAGGGACGGCATCGCGCCCACGCAGCCAACGTACAATACCCTCGTGTCGGCGTTTGCTAGGCTTGGGTGGATTAAGCAGGCGACCAAGGTCGTGGAGTCCATGACAGCCTACGGGTTCGAGCCTGACCTGAGGACGTACAATGTGCTCGCCGTGGGGCTGTGCCAGGCGGGGAAGGTGGACGAGGCATTCCGGCTGAAGGATGAGATGGAACGGCTCAGCACCGCGTTGCCGGATGTAGTGACTTACAATACACTTGTTGACGCCTGCTTCAAGTGGCGGTGCTCATCAGATGCATTGAGGCTGCTTGAGGAAATGCGTGACAAGGGGGTGAAGCCGACTTTGGTCACACATAACATTGTTGTGAAGAGTCTTTGCAAGGAGGGTAAATTGGAGGAGGCATTGGGGAAGCTGGAGAAGATAGCAGAGGAGGGGTTGGCACCAGATGTAATCACGTACAATACGTTGATTGATGCATACTGTAAGGCTGGTAATGTCGCAAAAGCATTCACATTGATGGATGAGATGGTCGGAAAGGGGCTCAAAATGGACACCTTCACACTTAACACCGTGCTGTACAACCTATGCAAGATGAAGCGTTATGAAGATGCTGAGGAGCTTTTGCATTCACCCCCGCAGCGGGGTTTCGTGCCTGATGAAGTCAGCTATGGTACTGTAATGGCTGCGTACTTCAAGGAGTATAATCCGGAGCCTGCTTTGCGTCTGTGGGACCAGATGATTGAGAGGAAGTTGATACCAAGCATTTCAACGTACAACACGTTGATCAAGGGGCTTTGTAGGATGGAGAGGCTGAAAGAAGCAATTGACAAATTAAATGAGCTCGTGGAGAAGGGGTTGGTTCCTGATGAAACCACATATAATATCATCATTCATGCATACTGCAAGGAAGGGGACCTAGAAAATGCCTTTCGATTCCACAACAAGATGGTTGAGAATTCCTTCAAGCCAGATGTTGTTACCTGCAACACTTTGATGAATGGCCTTTGTCTGCATGGGAAGCTAGATAAAGCATTGAAACTCTTTGAATCATGGGTGGAGAAGGGGAAGAAGGTTGATGTTATCACATATAATACCCTAATTCAATCGATGTGCAAAGTTGGGGATGTTGATACTGCTTTGCACTTCTTTGATGACATGGAGGTCAAGGGATTGCAGCCTGATGCATTTACTTATAATGTTGTGTTATCTGCACTATCTGAAGCAGGAAGATCAGAAGAAGCACATAATATGCTACATAAGTTAGCCGATAGTGGAAAATTATCTCAAAGCTTTGCTTGTCCTCTGTTGAAGCCTTCTTCTGCGGATGAAGCAGATGTCAAGGAACATGAGGGTAAACCTGAGGCAGAATCCAGTGAAAAAGCACAAGACAATGCTCTGGAGACATACATGGAACGCCTAAATGGGCTATGTACCGGTGGGCAATTGAAAGAAGCTAAAGCCGTTTTGGATGAGATGATGCAAAAGGGGATGCCTGTTGACAGTTCAACATATATAACTTTGATGGAAGGGCTTATCAAGAGACAGAAAAGGCAAACCCATGCAGCTGGACAGTCCACACTATAG
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| CDS seq | ATGGACACCCCGCCGTCCGCCGCCGCCGCCACCGCCACCGCCGTTGCGTCAGACTCTGATTGCGACTCCGCGCTCGTCGCCGACGTGGCGGAAGCGCTCGTGTCGGCGTCCCGCCTGCCGGAGCCGCCGCCTATCCCCGCCCTCCTCGCCCTCTACCTCCCGCGCCTCGCCGCCTCCCACCACCCGCGCGTGCTCTCCCTCGCCGCCTCCCACCCGGGGCTCGCCTCGCCGGACCTGCTCCTCGCCTACCGCCGCCACCTCTCGCCGCCCTCCTGCCTCCCCTCCCTCGTCCCGCTCCTCCCCGTCCTCCCCTACCGCCACCTCCTCCCGCTCCTCCTCTCCTTCGTCCCGCTCGACCCGCTTCGCCACCTCCACCGCCACCTCCTCGCGCACCTCCCCACGAGTCCCCTCGCCGATGCCGCGCTCTCCGCCTACGCCCGCCTCCGCCTCCCCCACCTCGCCGCCCAGCTCCTCCACTCCCTCCGCCGCCGCCGTGGCGTTCGCCCTTCCCTCCAGGCTGCCAACGCCGTCCTCTCCGCGCTTTCGCGCAGCCCATCCACCTTGCCGCAGGCCTCCCTCGATGTCTTCCGCTCCCTCATCGAGCTCCGCCTCCACCCCAACCACTACACCTTCAACCTCCTCGTCCACACGCATTGCTCCAAGGGCACCCTCGCCGACGCTCTCGCCACGCTCTCCACCATGCAGGGGTTCGGCCTCTCCCCCGATGCCGTCACCTACAACACGCTCCTCAATGCGCACTGCCGGAAGGGCATGCTCGGCGAGGCCCGGGCACTGCTGGCGAGGATGAAGAGGGACGGCATCGCGCCCACGCAGCCAACGTACAATACCCTCGTGTCGGCGTTTGCTAGGCTTGGGTGGATTAAGCAGGCGACCAAGGTCGTGGAGTCCATGACAGCCTACGGGTTCGAGCCTGACCTGAGGACGTACAATGTGCTCGCCGTGGGGCTGTGCCAGGCGGGGAAGGTGGACGAGGCATTCCGGCTGAAGGATGAGATGGAACGGCTCAGCACCGCGTTGCCGGATGTAGTGACTTACAATACACTTGTTGACGCCTGCTTCAAGTGGCGGTGCTCATCAGATGCATTGAGGCTGCTTGAGGAAATGCGTGACAAGGGGGTGAAGCCGACTTTGGTCACACATAACATTGTTGTGAAGAGTCTTTGCAAGGAGGGTAAATTGGAGGAGGCATTGGGGAAGCTGGAGAAGATAGCAGAGGAGGGGTTGGCACCAGATGTAATCACGTACAATACGTTGATTGATGCATACTGTAAGGCTGGTAATGTCGCAAAAGCATTCACATTGATGGATGAGATGGTCGGAAAGGGGCTCAAAATGGACACCTTCACACTTAACACCGTGCTGTACAACCTATGCAAGATGAAGCGTTATGAAGATGCTGAGGAGCTTTTGCATTCACCCCCGCAGCGGGGTTTCGTGCCTGATGAAGTCAGCTATGGTACTGTAATGGCTGCGTACTTCAAGGAGTATAATCCGGAGCCTGCTTTGCGTCTGTGGGACCAGATGATTGAGAGGAAGTTGATACCAAGCATTTCAACGTACAACACGTTGATCAAGGGGCTTTGTAGGATGGAGAGGCTGAAAGAAGCAATTGACAAATTAAATGAGCTCGTGGAGAAGGGGTTGGTTCCTGATGAAACCACATATAATATCATCATTCATGCATACTGCAAGGAAGGGGACCTAGAAAATGCCTTTCGATTCCACAACAAGATGGTTGAGAATTCCTTCAAGCCAGATGTTGTTACCTGCAACACTTTGATGAATGGCCTTTGTCTGCATGGGAAGCTAGATAAAGCATTGAAACTCTTTGAATCATGGGTGGAGAAGGGGAAGAAGGTTGATGTTATCACATATAATACCCTAATTCAATCGATGTGCAAAGTTGGGGATGTTGATACTGCTTTGCACTTCTTTGATGACATGGAGGTCAAGGGATTGCAGCCTGATGCATTTACTTATAATGTTGTGTTATCTGCACTATCTGAAGCAGGAAGATCAGAAGAAGCACATAATATGCTACATAAGTTAGCCGATAGTGGAAAATTATCTCAAAGCTTTGCTTGTCCTCTGTTGAAGCCTTCTTCTGCGGATGAAGCAGATGTCAAGGAACATGAGGGTAAACCTGAGGCAGAATCCAGTGAAAAAGCACAAGACAATGCTCTGGAGACATACATGGAACGCCTAAATGGGCTATGTACCGGTGGGCAATTGAAAGAAGCTAAAGCCGTTTTGGATGAGATGATGCAAAAGGGGATGCCTGTTGACAGTTCAACATATATAACTTTGATGGAAGGGCTTATCAAGAGACAGAAAAGGCAAACCCATGCAGCTGGACAGTCCACACTATAG
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| Protein seq | MDTPPSAAAATATAVASDSDCDSALVADVAEALVSASRLPEPPPIPALLALYLPRLAASHHPRVLSLAASHPGLASPDLLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHLPTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQKRQTHAAGQSTL |
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| Function | Pentatricopeptide repeat-containing protein At2g16880 [UniProtKB/Swiss-Prot:Q9ZVX5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g10420 | LOC_Os03g10420.1 | Chr03 | 5304975 | 5307365 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACACCCCGCCGTCCGCCGCCGCCGCCACCGCCACCGCCGTTGCGTCAGACTCTGATTGCGACTCCGCGCTCGTCGCCGACGTGGCGGAAGCGCTCGTGTCGGCGTCCCGCCTGCCGGAGCCGCCGCCTATCCCCGCCCTCCTCGCCCTCTACCTCCCGCGCCTCGCCGCCTCCCACCACCCGCGCGTGCTCTCCCTCGCCGCCTCCCACCCGGGGCTCGCCTCGCCGGACCTGCTCCTCGCCTACCGCCGCCACCTCTCGCCGCCCTCCTGCCTCCCCTCCCTCGTCCCGCTCCTCCCCGTCCTCCCCTACCGCCACCTCCTCCCGCTCCTCCTCTCCTTCGTCCCGCTCGACCCGCTTCGCCACCTCCACCGCCACCTCCTCGCGCACCTCCCCACGAGTCCCCTCGCCGATGCCGCGCTCTCCGCCTACGCCCGCCTCCGCCTCCCCCACCTCGCCGCCCAGCTCCTCCACTCCCTCCGCCGCCGCCGTGGCGTTCGCCCTTCCCTCCAGGCTGCCAACGCCGTCCTCTCCGCGCTTTCGCGCAGCCCATCCACCTTGCCGCAGGCCTCCCTCGATGTCTTCCGCTCCCTCATCGAGCTCCGCCTCCACCCCAACCACTACACCTTCAACCTCCTCGTCCACACGCATTGCTCCAAGGGCACCCTCGCCGACGCTCTCGCCACGCTCTCCACCATGCAGGGGTTCGGCCTCTCCCCCGATGCCGTCACCTACAACACGCTCCTCAATGCGCACTGCCGGAAGGGCATGCTCGGCGAGGCCCGGGCACTGCTGGCGAGGATGAAGAGGGACGGCATCGCGCCCACGCAGCCAACGTACAATACCCTCGTGTCGGCGTTTGCTAGGCTTGGGTGGATTAAGCAGGCGACCAAGGTCGTGGAGTCCATGACAGCCTACGGGTTCGAGCCTGACCTGAGGACGTACAATGTGCTCGCCGTGGGGCTGTGCCAGGCGGGGAAGGTGGACGAGGCATTCCGGCTGAAGGATGAGATGGAACGGCTCAGCACCGCGTTGCCGGATGTAGTGACTTACAATACACTTGTTGACGCCTGCTTCAAGTGGCGGTGCTCATCAGATGCATTGAGGCTGCTTGAGGAAATGCGTGACAAGGGGGTGAAGCCGACTTTGGTCACACATAACATTGTTGTGAAGAGTCTTTGCAAGGAGGGTAAATTGGAGGAGGCATTGGGGAAGCTGGAGAAGATAGCAGAGGAGGGGTTGGCACCAGATGTAATCACGTACAATACGTTGATTGATGCATACTGTAAGGCTGGTAATGTCGCAAAAGCATTCACATTGATGGATGAGATGGTCGGAAAGGGGCTCAAAATGGACACCTTCACACTTAACACCGTGCTGTACAACCTATGCAAGATGAAGCGTTATGAAGATGCTGAGGAGCTTTTGCATTCACCCCCGCAGCGGGGTTTCGTGCCTGATGAAGTCAGCTATGGTACTGTAATGGCTGCGTACTTCAAGGAGTATAATCCGGAGCCTGCTTTGCGTCTGTGGGACCAGATGATTGAGAGGAAGTTGATACCAAGCATTTCAACGTACAACACGTTGATCAAGGGGCTTTGTAGGATGGAGAGGCTGAAAGAAGCAATTGACAAATTAAATGAGCTCGTGGAGAAGGGGTTGGTTCCTGATGAAACCACATATAATATCATCATTCATGCATACTGCAAGGAAGGGGACCTAGAAAATGCCTTTCGATTCCACAACAAGATGGTTGAGAATTCCTTCAAGCCAGATGTTGTTACCTGCAACACTTTGATGAATGGCCTTTGTCTGCATGGGAAGCTAGATAAAGCATTGAAACTCTTTGAATCATGGGTGGAGAAGGGGAAGAAGGTTGATGTTATCACATATAATACCCTAATTCAATCGATGTGCAAAGTTGGGGATGTTGATACTGCTTTGCACTTCTTTGATGACATGGAGGTCAAGGGATTGCAGCCTGATGCATTTACTTATAATGTTGTGTTATCTGCACTATCTGAAGCAGGAAGATCAGAAGAAGCACATAATATGCTACATAAGTTAGCCGATAGTGGAAAATTATCTCAAAGCTTTGCTTGTCCTCTGTTGAAGCCTTCTTCTGCGGATGAAGCAGATGTCAAGGAACATGAGGGTAAACCTGAGGCAGAATCCAGTGAAAAAGCACAAGACAATGCTCTGGAGACATACATGGAACGCCTAAATGGGCTATGTACCGGTGGGCAATTGAAAGAAGCTAAAGCCGTTTTGGATGAGATGATGCAAAAGGGGATGCCTGTTGACAGTTCAACATATATAACTTTGATGGAAGGGCTTATCAAGAGACAGAAAAGGCAAACCCATGCAGCTGGACAGTCCACACTATAG
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| Protein seq | MDTPPSAAAATATAVASDSDCDSALVADVAEALVSASRLPEPPPIPALLALYLPRLAASHHPRVLSLAASHPGLASPDLLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHLPTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQKRQTHAAGQSTL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.333018 | 0.744413 | 0.498207 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0201400 | RBH | 2.083658 | 1.093601 | 1.732504 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0201400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007430 | RBH | 1.017299 | 5.101829 | 1.943262 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007400 | RBH | 0.000000 | 1.913518 | 0.709841 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007450 | RBH | 1.821108 | 8.240445 | 4.561619 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007420 | RBH | 0.222562 | 0.311062 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007300 | RBH | 3.723685 | 4.361032 | 6.208744 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0089500 | RBH | 1.1611355 | 5.3823525 | 1.8135525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007220 | RBH | 0.228777 | 0.994823 | 0.825670 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0089900 | RBH | 1.301398 | 6.641726 | 4.302425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007260 | RBH | 0.123501 | 0.036228 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007320 | RBH | 0.317800 | 3.596946 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007300 | RBH | 1.752773 | 1.879241 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007320 | RBH | 0.247306 | 0.071177 | 0.308641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007290 | RBH | 0.208412 | 6.131985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007320 | RBH | 0.320240 | 0.662082 | 2.298408 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0007150 | RBH | 0.000000 | 0.000000 | 0.000000 |
