Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g10100 | OGI:03013810 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:5112102-5114453 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAGCAGCAGGAGTTAGCGCCGCACATACGTACGGCCAGTAATCCCACACGAACTTGATCCATCCGAGCTCCCGCGCCGCCTCTGCCACCATGTCGAAGGACGACTCCTCCGACGTCCCTGCCGCCGAGGCGCCGGCGAAGCGTGCCCCCCTCAACAAGTACGCCCTCGCCTGCGCCATCCTCGCCTCCATGAACTCCATCCTCCTCGGCTACGGTCCGTGCAAAAAACCGCACATCACACCCTGTGCTCAGAACCAGGAGAAACGTGCAAGCGTGCTAACAATAATCTCGTTTTTGGTCGATCGAGCAGACATCTCGGTGATGAGCGGCGCGCAGAAGTTCATGAAGAAGGACCTGAACATCTCGGACGCGAAGGTGGAGGTCCTCGCCGGCATCATCAACATCTACTCGCTCGTCGGCTCGCTCGCGGCGGGCCGGACGTCCGACTGGATCGGCCGTCGCTACACCATGGTGCTCGCGTCGGTCATATTCTTCGCCGGCGCGCTCATCATGGGCCTCGCCCCGAGCTACGCGATCGTCATGCTCGGCCGCTTCGTGGCCGGCGTGGGTGTGGGCTACGCGCTCATGATCGCGCCGGTGTACACGGCCGAGGTGGCGCCGACGTCCGCCCGCGGCTTGCTCACGTCGTTCCCCGAGGTGTTCATCAACGCCGGCGTCCTCCTCGGCTACGTCTCCAACTTCGCCTTCTACCGCCTCCCGCTGCACATTGGCTGGCGCGTCATGTTCCTAGTCGGCGCCGTGCCGCCCGCCTTCCTCGCCGTGGGCGTCCTCGCCATGCCGGAGTCGCCGCGGTGGCTCGTCATGCAGGGGCGCATCGGCGACGCGCGACGTGTCCTCGAGAAGACCTCCGACTCGCCGGCCGAGGCCGAGGAGCGGCTCGCGGACATCAAGAACGCGGTCGGCATCCCCGAAGGGATCTCCGACGAGGACGAAGTTGTAGCCGTCGTCCACAAGAGCAGGGGCTCCCACGGCGAGGGTGTCTGGAGGGACCTGCTGCTCCGCCCGACGCCGGCCGTGCGCCGCATACTCATCGCCTGCCTCGGCCTCCAGTTCTTCCAGCAAGCCTCCGGCATCGACGCCGTCGTGCTGTACAGCCCGCGGGTGTTCGACAACGCGGGCCTCCACTCCGACTCCGACTCCATCGGAGCCTCCGTGGCGGTGGGCGCCAGCAAGACGCTCTTCATCCTCGTGGCCACGTTCCTCCTCGACCGCGTCGGCCGGAGGCCGCTGCTCCTCACCAGCGCCGGCGGGATGGTGATCTCGCTCGTCACGCTGGCCTCGGCGCTGCACATGATCGAGCACCGCCCGGAGGGCCAGGCGACGGCGCTGGTGGGTCTGAGCATCGCGATGGTGCTGGTGTTCGTGGCGTCCTTCTCCATCGGGATGGGCCCGATCGCGTGGGTGTACAGCTCGGAGATCTTCCCGCTGCGGCTGCGCGCGCAGGGATGCGCGCTCGGCACGGCGATGAACCGGGTCGTGAGCGGCGCCGTCAGCATGTCCTTCATCTCGCTCTACAAGGCCATCACCTTCGCCGGGAGCTTCTACCTCTACGCCGGCATAGCTGCGGCCGGGTGGGTGTTCATGTTCTTCTTCCTGCCGGAGACGCAAGGCAGGAGCCTGGAGGACACCGTCAAACTCTTCGGCGGCGATGAACGTGACGCGAACGGTACTGTGGGAAGGGAAGACGGCCATGGGCAGAACAAGTCCACTGAGTTGACTACTCAGCAGTGAGCCAGTAACCAGTGAGGACTACTAGTACAGTAGTACATGATCTACTCAGCAGTGACCAGTGAGGGCTACTAGTACATACCCTCCGTAGGAAATCGAGTCAAACTTTGAAAATATAAATCATAAGTAACTCTTAAGTTGTTGAGTTTGAAAATGTAAAAATTATATGAATAGGTTTATCTTGAAAAATACTTTTATAAAAATATATATATATCACTTTTCAATAAATATTTTTATAAAAACAAGAAATTAAAATTGTGTTTTAGAGACCATGTCGTTGTTTAAAACGACTTCCTTTACGAGTATGGAGAGAGGAATAATACTACTCCGGTGTGCAATTAGTGACCGTGTAAGTACAAAAGCTTCGGTAAGGAAAAAAAGATTTCATCTGCCGCAGGTCGTCCCCAAATGCTCGTGATGAACCTTGATTTCATTCTACGGAGCTTGGGCAAAAATCGATGTGGTGTGTATCGATTATCTTCGGCGATCGAAGTTCCGTTCCAAGAGCGGGGATACATCTGGGAGTTTGTAACGTAAGTTAAGGTTCGGATTTGCCCGTGTCGTACTTAATAACCAGGTAGCCTGTCATATCTTAACGGTGCC
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| CDS seq | ATGTCGAAGGACGACTCCTCCGACGTCCCTGCCGCCGAGGCGCCGGCGAAGCGTGCCCCCCTCAACAAGTACGCCCTCGCCTGCGCCATCCTCGCCTCCATGAACTCCATCCTCCTCGGCTACGACATCTCGGTGATGAGCGGCGCGCAGAAGTTCATGAAGAAGGACCTGAACATCTCGGACGCGAAGGTGGAGGTCCTCGCCGGCATCATCAACATCTACTCGCTCGTCGGCTCGCTCGCGGCGGGCCGGACGTCCGACTGGATCGGCCGTCGCTACACCATGGTGCTCGCGTCGGTCATATTCTTCGCCGGCGCGCTCATCATGGGCCTCGCCCCGAGCTACGCGATCGTCATGCTCGGCCGCTTCGTGGCCGGCGTGGGTGTGGGCTACGCGCTCATGATCGCGCCGGTGTACACGGCCGAGGTGGCGCCGACGTCCGCCCGCGGCTTGCTCACGTCGTTCCCCGAGGTGTTCATCAACGCCGGCGTCCTCCTCGGCTACGTCTCCAACTTCGCCTTCTACCGCCTCCCGCTGCACATTGGCTGGCGCGTCATGTTCCTAGTCGGCGCCGTGCCGCCCGCCTTCCTCGCCGTGGGCGTCCTCGCCATGCCGGAGTCGCCGCGGTGGCTCGTCATGCAGGGGCGCATCGGCGACGCGCGACGTGTCCTCGAGAAGACCTCCGACTCGCCGGCCGAGGCCGAGGAGCGGCTCGCGGACATCAAGAACGCGGTCGGCATCCCCGAAGGGATCTCCGACGAGGACGAAGTTGTAGCCGTCGTCCACAAGAGCAGGGGCTCCCACGGCGAGGGTGTCTGGAGGGACCTGCTGCTCCGCCCGACGCCGGCCGTGCGCCGCATACTCATCGCCTGCCTCGGCCTCCAGTTCTTCCAGCAAGCCTCCGGCATCGACGCCGTCGTGCTGTACAGCCCGCGGGTGTTCGACAACGCGGGCCTCCACTCCGACTCCGACTCCATCGGAGCCTCCGTGGCGGTGGGCGCCAGCAAGACGCTCTTCATCCTCGTGGCCACGTTCCTCCTCGACCGCGTCGGCCGGAGGCCGCTGCTCCTCACCAGCGCCGGCGGGATGGTGATCTCGCTCGTCACGCTGGCCTCGGCGCTGCACATGATCGAGCACCGCCCGGAGGGCCAGGCGACGGCGCTGGTGGGTCTGAGCATCGCGATGGTGCTGGTGTTCGTGGCGTCCTTCTCCATCGGGATGGGCCCGATCGCGTGGGTGTACAGCTCGGAGATCTTCCCGCTGCGGCTGCGCGCGCAGGGATGCGCGCTCGGCACGGCGATGAACCGGGTCGTGAGCGGCGCCGTCAGCATGTCCTTCATCTCGCTCTACAAGGCCATCACCTTCGCCGGGAGCTTCTACCTCTACGCCGGCATAGCTGCGGCCGGGTGGGTGTTCATGTTCTTCTTCCTGCCGGAGACGCAAGGCAGGAGCCTGGAGGACACCGTCAAACTCTTCGGCGGCGATGAACGTGACGCGAACGGTACTGTGGGAAGGGAAGACGGCCATGGGCAGAACAAGTCCACTGAGTTGACTACTCAGCAGTGA
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| Protein seq | MSKDDSSDVPAAEAPAKRAPLNKYALACAILASMNSILLGYDISVMSGAQKFMKKDLNISDAKVEVLAGIINIYSLVGSLAAGRTSDWIGRRYTMVLASVIFFAGALIMGLAPSYAIVMLGRFVAGVGVGYALMIAPVYTAEVAPTSARGLLTSFPEVFINAGVLLGYVSNFAFYRLPLHIGWRVMFLVGAVPPAFLAVGVLAMPESPRWLVMQGRIGDARRVLEKTSDSPAEAEERLADIKNAVGIPEGISDEDEVVAVVHKSRGSHGEGVWRDLLLRPTPAVRRILIACLGLQFFQQASGIDAVVLYSPRVFDNAGLHSDSDSIGASVAVGASKTLFILVATFLLDRVGRRPLLLTSAGGMVISLVTLASALHMIEHRPEGQATALVGLSIAMVLVFVASFSIGMGPIAWVYSSEIFPLRLRAQGCALGTAMNRVVSGAVSMSFISLYKAITFAGSFYLYAGIAAAGWVFMFFFLPETQGRSLEDTVKLFGGDERDANGTVGREDGHGQNKSTELTTQQ |
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| Function | Polyol transporter 5 [UniProtKB/Swiss-Prot:Q8VZ80] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g10100 | LOC_Os03g10100.1 | Chr03 | 5112102 | 5114453 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGAAGGACGACTCCTCCGACGTCCCTGCCGCCGAGGCGCCGGCGAAGCGTGCCCCCCTCAACAAGTACGCCCTCGCCTGCGCCATCCTCGCCTCCATGAACTCCATCCTCCTCGGCTACGACATCTCGGTGATGAGCGGCGCGCAGAAGTTCATGAAGAAGGACCTGAACATCTCGGACGCGAAGGTGGAGGTCCTCGCCGGCATCATCAACATCTACTCGCTCGTCGGCTCGCTCGCGGCGGGCCGGACGTCCGACTGGATCGGCCGTCGCTACACCATGGTGCTCGCGTCGGTCATATTCTTCGCCGGCGCGCTCATCATGGGCCTCGCCCCGAGCTACGCGATCGTCATGCTCGGCCGCTTCGTGGCCGGCGTGGGTGTGGGCTACGCGCTCATGATCGCGCCGGTGTACACGGCCGAGGTGGCGCCGACGTCCGCCCGCGGCTTGCTCACGTCGTTCCCCGAGGTGTTCATCAACGCCGGCGTCCTCCTCGGCTACGTCTCCAACTTCGCCTTCTACCGCCTCCCGCTGCACATTGGCTGGCGCGTCATGTTCCTAGTCGGCGCCGTGCCGCCCGCCTTCCTCGCCGTGGGCGTCCTCGCCATGCCGGAGTCGCCGCGGTGGCTCGTCATGCAGGGGCGCATCGGCGACGCGCGACGTGTCCTCGAGAAGACCTCCGACTCGCCGGCCGAGGCCGAGGAGCGGCTCGCGGACATCAAGAACGCGGTCGGCATCCCCGAAGGGATCTCCGACGAGGACGAAGTTGTAGCCGTCGTCCACAAGAGCAGGGGCTCCCACGGCGAGGGTGTCTGGAGGGACCTGCTGCTCCGCCCGACGCCGGCCGTGCGCCGCATACTCATCGCCTGCCTCGGCCTCCAGTTCTTCCAGCAAGCCTCCGGCATCGACGCCGTCGTGCTGTACAGCCCGCGGGTGTTCGACAACGCGGGCCTCCACTCCGACTCCGACTCCATCGGAGCCTCCGTGGCGGTGGGCGCCAGCAAGACGCTCTTCATCCTCGTGGCCACGTTCCTCCTCGACCGCGTCGGCCGGAGGCCGCTGCTCCTCACCAGCGCCGGCGGGATGGTGATCTCGCTCGTCACGCTGGCCTCGGCGCTGCACATGATCGAGCACCGCCCGGAGGGCCAGGCGACGGCGCTGGTGGGTCTGAGCATCGCGATGGTGCTGGTGTTCGTGGCGTCCTTCTCCATCGGGATGGGCCCGATCGCGTGGGTGTACAGCTCGGAGATCTTCCCGCTGCGGCTGCGCGCGCAGGGATGCGCGCTCGGCACGGCGATGAACCGGGTCGTGAGCGGCGCCGTCAGCATGTCCTTCATCTCGCTCTACAAGGCCATCACCTTCGCCGGGAGCTTCTACCTCTACGCCGGCATAGCTGCGGCCGGGTGGGTGTTCATGTTCTTCTTCCTGCCGGAGACGCAAGGCAGGAGCCTGGAGGACACCGTCAAACTCTTCGGCGGCGATGAACGTGACGCGAACGGTACTGTGGGAAGGGAAGACGGCCATGGGCAGAACAAGTCCACTGAGTTGACTACTCAGCAGTGA
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| Protein seq | MSKDDSSDVPAAEAPAKRAPLNKYALACAILASMNSILLGYDISVMSGAQKFMKKDLNISDAKVEVLAGIINIYSLVGSLAAGRTSDWIGRRYTMVLASVIFFAGALIMGLAPSYAIVMLGRFVAGVGVGYALMIAPVYTAEVAPTSARGLLTSFPEVFINAGVLLGYVSNFAFYRLPLHIGWRVMFLVGAVPPAFLAVGVLAMPESPRWLVMQGRIGDARRVLEKTSDSPAEAEERLADIKNAVGIPEGISDEDEVVAVVHKSRGSHGEGVWRDLLLRPTPAVRRILIACLGLQFFQQASGIDAVVLYSPRVFDNAGLHSDSDSIGASVAVGASKTLFILVATFLLDRVGRRPLLLTSAGGMVISLVTLASALHMIEHRPEGQATALVGLSIAMVLVFVASFSIGMGPIAWVYSSEIFPLRLRAQGCALGTAMNRVVSGAVSMSFISLYKAITFAGSFYLYAGIAAAGWVFMFFFLPETQGRSLEDTVKLFGGDERDANGTVGREDGHGQNKSTELTTQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.900167 | 4.652934 | 0.408528 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0197200 | RBH | 10.583112 | 9.917803 | 4.000711 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0197200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007180 | RBH | 0.084209 | 2.326364 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007150 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007200 | RBH | 0.373357 | 0.000000 | 0.586967 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007190 | RBH | 0.094832 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007070 | RBH | 1.843831 | 4.611907 | 2.812706 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0085200 | RBH | 0.3235875 | 0.1997465 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0006990 | RBH | 0.064218 | 0.070737 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0085600 | RBH | 3.4582975 | 0.0950495 | 0.0163705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007030 | RBH | 0.867484 | 0.090687 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007090 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007080 | RBH | 0.065710 | 0.0 | 0.446156 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0006900 | RBH | 0.0 | 1.737549 | 0.0 |
