Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g06250 | OGI:03008320 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:3131876-3133202 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCCCTCCTCCTGTGCAGCCATCAAACGCGGGGTCGTACGAACTGAGATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGATCCGTGTGCCGTGAGATTCTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAGTCCGTGAGATCTATACCCTGAAATCCCACTGTTTCTTCGCAAAGATCGCGTAATTTTGTTGTTGTTGTTGTTGTAGATGCCGCGTGTGTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACCCTATACTGGCTTGTGGCCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGTCGGAGAGGACGACGTGGAGGAAGCCGGAGGTGGGGTGGATGAAGCTCAACTTCGACGGGTCGCGCAACGACGCGACCGGGGCGGCGAGCATCGGCGGCGCGTTCCGCGACCACGAGGGCGCGTTCGTGGCCGGCTACGCGGAGCGGATGATCGTCGGCGGCGCGTCGAGCTTCACCGCGGAGCTCGCCGCGCTGCGGCGAGGGCTCGAGCTGGCGGCGAGGTACGGGTGGCGGCGCGTCTGGGCGGAGGGGGACTCGAGGGCGGTGGTCGACGTGGTGCACGGGCGCGCCGGGGTGCGGTCGGAGGAGGACCGGAGGCAGTGCGGGGAGATCGCCGCGCTGCTCCCGGCGCTCGACGGCGTCGCCGTGTCGCACCTGTGCCGCGACGAGAACAAGGTGGCGCACGGGTTCGCCAAGCTCGGCCACAAGGCGCGGCGCCGCCGGGTGTGGCACGTCGTGCCACCCAACGAGGTACTCGTGTTCCTGCAACGTGATGCTGATAGAGGGTAAAAGTACAAGGACCGAACAACACAACGTTAGTCGTTGATCGATGTGATCTTTCTCTGTAAAAAAGAAAGTTAACTGAGAATTAAACACCATCTAACCGAATCTGAACACGAGGTTATCGGTAACATTAGTCATTAATCGATATGATCTCTATCTATTGATTGATAATGATCTCTCTCTGAAAAAAAAAATTAACCTAAATGAGATTTTAACATAATATAAAATAACAAATCTGAAACATGAGGTTGTCCTAGGTGGTAATGTTAGTTGTTGATCGATGTGACCTCTCTAACATTGCTACTCTATTAAAAAAAGCCTATCTAAATGAAAATTTAACACCACCTAGGACAATAAATATGAACATGAGATTTCTTAGAGTGGTATCAAATTCTCATTTAGATTGGTTTATTGTGATATGGAAGAATTACTTCAGCTTTGGGGGATTTATAATGAGATACAATTCC
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| CDS seq | ATGCCGCGTGTGTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACCCTATACTGGCTTGTGGCCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGTCGGAGAGGACGACGTGGAGGAAGCCGGAGGTGGGGTGGATGAAGCTCAACTTCGACGGGTCGCGCAACGACGCGACCGGGGCGGCGAGCATCGGCGGCGCGTTCCGCGACCACGAGGGCGCGTTCGTGGCCGGCTACGCGGAGCGGATGATCGTCGGCGGCGCGTCGAGCTTCACCGCGGAGCTCGCCGCGCTGCGGCGAGGGCTCGAGCTGGCGGCGAGGTACGGGTGGCGGCGCGTCTGGGCGGAGGGGGACTCGAGGGCGGTGGTCGACGTGGTGCACGGGCGCGCCGGGGTGCGGTCGGAGGAGGACCGGAGGCAGTGCGGGGAGATCGCCGCGCTGCTCCCGGCGCTCGACGGCGTCGCCGTGTCGCACCTGTGCCGCGACGAGAACAAGGTGGCGCACGGGTTCGCCAAGCTCGGCCACAAGGCGCGGCGCCGCCGGGTGTGGCACGTCGTGCCACCCAACGAGGTACTCGTGTTCCTGCAACGTGATGCTGATAGAGGGTAA
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| Protein seq | MPRVYRPDLGVLRPCNPILACGLVAGEVGRWTSSSSSERTTWRKPEVGWMKLNFDGSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTAELAALRRGLELAARYGWRRVWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSHLCRDENKVAHGFAKLGHKARRRRVWHVVPPNEVLVFLQRDADRG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g06250 | LOC_Os03g06250.1 | Chr03 | 3131876 | 3133202 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGCGTGTGTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACCCTATACTGGCTTGTGGCCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGTCGGAGAGGACGACGTGGAGGAAGCCGGAGGTGGGGTGGATGAAGCTCAACTTCGACGGGTCGCGCAACGACGCGACCGGGGCGGCGAGCATCGGCGGCGCGTTCCGCGACCACGAGGGCGCGTTCGTGGCCGGCTACGCGGAGCGGATGATCGTCGGCGGCGCGTCGAGCTTCACCGCGGAGCTCGCCGCGCTGCGGCGAGGGCTCGAGCTGGCGGCGAGGTACGGGTGGCGGCGCGTCTGGGCGGAGGGGGACTCGAGGGCGGTGGTCGACGTGGTGCACGGGCGCGCCGGGGTGCGGTCGGAGGAGGACCGGAGGCAGTGCGGGGAGATCGCCGCGCTGCTCCCGGCGCTCGACGGCGTCGCCGTGTCGCACCTGTGCCGCGACGAGAACAAGGTGGCGCACGGGTTCGCCAAGCTCGGCCACAAGGCGCGGCGCCGCCGGGTGTGGCACGTCGTGCCACCCAACGAGGTACTCGTGTTCCTGCAACGTGATGCTGATAGAGGGTAA
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| Protein seq | MPRVYRPDLGVLRPCNPILACGLVAGEVGRWTSSSSSERTTWRKPEVGWMKLNFDGSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTAELAALRRGLELAARYGWRRVWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSHLCRDENKVAHGFAKLGHKARRRRVWHVVPPNEVLVFLQRDADRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.299896 | 0.134273 | 0.120851 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0158600 | RBH | 0.345345 | 0.393065 | 0.313328 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0158600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004390 | RBH | 0.223701 | 0.0 | 0.411557 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004320 | RBH | 0.0 | 0.816539 | 0.460201 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004350 | RBH | 1.389891 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004320 | RBH | 0.060348 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004370 | RBH | 3.986320 | 0.0 | 0.928741 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0050100 | RBH | 0.2302515 | 3.2957215 | 0.4432115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004260 | RBH | 0.108470 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0050600 | RBH | 0.5646905 | 3.917711 | 0.1595865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004370 | RBH | 0.0 | 0.136221 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004340 | RBH | 0.0 | 3.386814 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004300 | RBH | 0.000000 | 7.078752 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004360 | RBH | 0.206643 | 0.169031 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004350 | RBH | 0.000000 | 1.554561 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004320 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0004170 | RBH | 0.0 | 6.574133 | 0.0 |
