Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g05210 | OGI:03006820 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:2528867-2530420 | ||||||||
| Gene Symbol | OsWD40-62 | ||||||||||
| DNA seq | AACAAGGAGCAAAACTCCCTGATGGTTCTCTTAAATCAAAACATTAATAATTACAAACAGGCAGATCTGAACTAAAAATTCATTCAGATTTAACCTTGAGCCTCACACCGTTACAAAACGGAGGGAGTAGTATTCACAAGCCGCGTAGCGGTTCCACTGTTTACAACGTTGTGTACACTACATACATCGGAGTACTGAATCACAAGACCACAAAGCAAAAATTGGCTGATGGTTCTCTTAAATCAAAACTAATTCAGGCCATAGCTAAATAAGACTCTGCTGCATCACTCAGTGATGTCCACTTCACCACTCTGACCTCGCCGGACGCATCTCCGGTGAAGACGACGCCGCGCGACCTGACGGATATCGTCCTGACCTCGTCGTCGCAGATAATATCCCCTCTCTTCTTCAGCGACGGGAGATCGTAGACACGGACAACGCCATCGCCGCGGGAGACAAGCAGCACGGGCTTCTCGTCGGCGTCGTACGTTCCGTCCATGGAAACGACCCGTTCGTCTTCCTTGTGGGTGTAGTGCACCTCGAGGTCGAGGTCGTCGTGATCAGGCTTCCACTGCCAGACCTTCACGGTGCCATCGTCGGACGAGGAGAGCAAGAACCGCTCCCAGCAGAGCAATGCGGTGACCGTCGACGAGTGGCCGGCGAAGCTGTAGATGCAGCGGTGGGTGTCGAGGTCCCAGACCCTGATGCTGCCGTCTGTTGAGCCGGAGTAGAGCGCGCCCTTGCCCTGCGCGAGCGACACGACGGCCTTGTAGTGGCCGGTGAGCGCGGCGACCTCGTCGAACGATTGCTGTTCTTGGTTCATCCTCCACATGAACACGGCACCGTCCTCCGCGCCGGCGAAGAGGTGGTCCTCGTCCTCGGCTAGCATGGCGGTGATCTGCGACGCGGGCCCTCGCAGCCGGAGCTCCTTGCCGGTCCCCGTGTGGATCGCCTTGACGGCGCCGCGCACGCCGGCGAGGACCCACGGGCCCATGGCGATCAGCTTGTGCACCTCCCCTTCTTGCATCTCCTCGACGCGGACGCACTGCCCGGTGCTGCAGTCCCAGGCGCGCACCGTGCTGTCCAGGCTGCCGGAGAACAGCTTGTCCGACCCTTCCGGCAGCGCGAAGCCGGTGACCGCCTTGGCGTGACCCTTGAGCCGCGCGACGCCGCAGAAGCCGTCGCCGACGCACCACGCGCCGCCGCCGCATCGGCGCTTGGCAGGCGTTTCCGGCGGCGCCTCAACCTGCCGCTTCGCCGGCTGAACCGGAGGAGCCCTACCCTTGCCATCCGAATTCGCGGCGACGCAGGACGGGTTGACCCACGTGTTGCTGCGCGTGTTGACGGCGGCGATCGGCGGCGCCGGATCAGGCGCGTCGGTGTGGAGGAATCGGCAGGGGTTCCGGCTGCACCTGCCGGACTTCCAGTAGTGGCAAACCTTCGGCGGCGCTGGCGGCGTGTTCCAGCAACCAGGTTTGCCGCGGCGCGGCTGAGGAGGGGCGGCGGGAGGAAGGGGAAGGAGCTGCACCGCCGCCATCGTCGTGGTTGGGACTT
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| CDS seq | ATGGCGGCGGTGCAGCTCCTTCCCCTTCCTCCCGCCGCCCCTCCTCAGCCGCGCCGCGGCAAACCTGGTTGCTGGAACACGCCGCCAGCGCCGCCGAAGGTTTGCCACTACTGGAAGTCCGGCAGGTGCAGCCGGAACCCCTGCCGATTCCTCCACACCGACGCGCCTGATCCGGCGCCGCCGATCGCCGCCGTCAACACGCGCAGCAACACGTGGGTCAACCCGTCCTGCGTCGCCGCGAATTCGGATGGCAAGGGTAGGGCTCCTCCGGTTCAGCCGGCGAAGCGGCAGGTTGAGGCGCCGCCGGAAACGCCTGCCAAGCGCCGATGCGGCGGCGGCGCGTGGTGCGTCGGCGACGGCTTCTGCGGCGTCGCGCGGCTCAAGGGTCACGCCAAGGCGGTCACCGGCTTCGCGCTGCCGGAAGGGTCGGACAAGCTGTTCTCCGGCAGCCTGGACAGCACGGTGCGCGCCTGGGACTGCAGCACCGGGCAGTGCGTCCGCGTCGAGGAGATGCAAGAAGGGGAGGTGCACAAGCTGATCGCCATGGGCCCGTGGGTCCTCGCCGGCGTGCGCGGCGCCGTCAAGGCGATCCACACGGGGACCGGCAAGGAGCTCCGGCTGCGAGGGCCCGCGTCGCAGATCACCGCCATGCTAGCCGAGGACGAGGACCACCTCTTCGCCGGCGCGGAGGACGGTGCCGTGTTCATGTGGAGGATGAACCAAGAACAGCAATCGTTCGACGAGGTCGCCGCGCTCACCGGCCACTACAAGGCCGTCGTGTCGCTCGCGCAGGGCAAGGGCGCGCTCTACTCCGGCTCAACAGACGGCAGCATCAGGGTCTGGGACCTCGACACCCACCGCTGCATCTACAGCTTCGCCGGCCACTCGTCGACGGTCACCGCATTGCTCTGCTGGGAGCGGTTCTTGCTCTCCTCGTCCGACGATGGCACCGTGAAGGTCTGGCAGTGGAAGCCTGATCACGACGACCTCGACCTCGAGGTGCACTACACCCACAAGGAAGACGAACGGGTCGTTTCCATGGACGGAACGTACGACGCCGACGAGAAGCCCGTGCTGCTTGTCTCCCGCGGCGATGGCGTTGTCCGTGTCTACGATCTCCCGTCGCTGAAGAAGAGAGGGGATATTATCTGCGACGACGAGGTCAGGACGATATCCGTCAGGTCGCGCGGCGTCGTCTTCACCGGAGATGCGTCCGGCGAGGTCAGAGTGGTGAAGTGGACATCACTGAGTGATGCAGCAGAGTCTTATTTAGCTATGGCCTGA
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| Protein seq | MAAVQLLPLPPAAPPQPRRGKPGCWNTPPAPPKVCHYWKSGRCSRNPCRFLHTDAPDPAPPIAAVNTRSNTWVNPSCVAANSDGKGRAPPVQPAKRQVEAPPETPAKRRCGGGAWCVGDGFCGVARLKGHAKAVTGFALPEGSDKLFSGSLDSTVRAWDCSTGQCVRVEEMQEGEVHKLIAMGPWVLAGVRGAVKAIHTGTGKELRLRGPASQITAMLAEDEDHLFAGAEDGAVFMWRMNQEQQSFDEVAALTGHYKAVVSLAQGKGALYSGSTDGSIRVWDLDTHRCIYSFAGHSSTVTALLCWERFLLSSSDDGTVKVWQWKPDHDDLDLEVHYTHKEDERVVSMDGTYDADEKPVLLVSRGDGVVRVYDLPSLKKRGDIICDDEVRTISVRSRGVVFTGDASGEVRVVKWTSLSDAAESYLAMA |
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| Function | Zinc finger CCCH domain-containing protein 48 [UniProtKB/Swiss-Prot:Q9FNZ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g05210 | LOC_Os03g05210.1 | Chr03 | 2528867 | 2530420 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCGGTGCAGCTCCTTCCCCTTCCTCCCGCCGCCCCTCCTCAGCCGCGCCGCGGCAAACCTGGTTGCTGGAACACGCCGCCAGCGCCGCCGAAGGTTTGCCACTACTGGAAGTCCGGCAGGTGCAGCCGGAACCCCTGCCGATTCCTCCACACCGACGCGCCTGATCCGGCGCCGCCGATCGCCGCCGTCAACACGCGCAGCAACACGTGGGTCAACCCGTCCTGCGTCGCCGCGAATTCGGATGGCAAGGGTAGGGCTCCTCCGGTTCAGCCGGCGAAGCGGCAGGTTGAGGCGCCGCCGGAAACGCCTGCCAAGCGCCGATGCGGCGGCGGCGCGTGGTGCGTCGGCGACGGCTTCTGCGGCGTCGCGCGGCTCAAGGGTCACGCCAAGGCGGTCACCGGCTTCGCGCTGCCGGAAGGGTCGGACAAGCTGTTCTCCGGCAGCCTGGACAGCACGGTGCGCGCCTGGGACTGCAGCACCGGGCAGTGCGTCCGCGTCGAGGAGATGCAAGAAGGGGAGGTGCACAAGCTGATCGCCATGGGCCCGTGGGTCCTCGCCGGCGTGCGCGGCGCCGTCAAGGCGATCCACACGGGGACCGGCAAGGAGCTCCGGCTGCGAGGGCCCGCGTCGCAGATCACCGCCATGCTAGCCGAGGACGAGGACCACCTCTTCGCCGGCGCGGAGGACGGTGCCGTGTTCATGTGGAGGATGAACCAAGAACAGCAATCGTTCGACGAGGTCGCCGCGCTCACCGGCCACTACAAGGCCGTCGTGTCGCTCGCGCAGGGCAAGGGCGCGCTCTACTCCGGCTCAACAGACGGCAGCATCAGGGTCTGGGACCTCGACACCCACCGCTGCATCTACAGCTTCGCCGGCCACTCGTCGACGGTCACCGCATTGCTCTGCTGGGAGCGGTTCTTGCTCTCCTCGTCCGACGATGGCACCGTGAAGGTCTGGCAGTGGAAGCCTGATCACGACGACCTCGACCTCGAGGTGCACTACACCCACAAGGAAGACGAACGGGTCGTTTCCATGGACGGAACGTACGACGCCGACGAGAAGCCCGTGCTGCTTGTCTCCCGCGGCGATGGCGTTGTCCGTGTCTACGATCTCCCGTCGCTGAAGAAGAGAGGGGATATTATCTGCGACGACGAGGTCAGGACGATATCCGTCAGGTCGCGCGGCGTCGTCTTCACCGGAGATGCGTCCGGCGAGGTCAGAGTGGTGAAGTGGACATCACTGAGTGATGCAGCAGAGTCTTATTTAGCTATGGCCTGA
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| Protein seq | MAAVQLLPLPPAAPPQPRRGKPGCWNTPPAPPKVCHYWKSGRCSRNPCRFLHTDAPDPAPPIAAVNTRSNTWVNPSCVAANSDGKGRAPPVQPAKRQVEAPPETPAKRRCGGGAWCVGDGFCGVARLKGHAKAVTGFALPEGSDKLFSGSLDSTVRAWDCSTGQCVRVEEMQEGEVHKLIAMGPWVLAGVRGAVKAIHTGTGKELRLRGPASQITAMLAEDEDHLFAGAEDGAVFMWRMNQEQQSFDEVAALTGHYKAVVSLAQGKGALYSGSTDGSIRVWDLDTHRCIYSFAGHSSTVTALLCWERFLLSSSDDGTVKVWQWKPDHDDLDLEVHYTHKEDERVVSMDGTYDADEKPVLLVSRGDGVVRVYDLPSLKKRGDIICDDEVRTISVRSRGVVFTGDASGEVRVVKWTSLSDAAESYLAMA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.106244 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0145600 | RBH | 0.171570 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0145600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0003560 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003480 | RBH | 0.0 | 0.0 | 0.196466 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0003520 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003460 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0003560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0040200 | RBH | 0.3212015 | 0.266949 | 0.1543845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003450 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0041100 | RBH | 0.4125735 | 0.1503555 | 0.363993 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003560 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0003530 | RBH | 0.0 | 1.944038 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0003560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0003540 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003390 | RBH | 0.0 | 2.543788 | 0.000000 |
