Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g56830 | OGI:02097930 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:34828492-34831322 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATATGAGAGCAAGAGACCGCGCTAGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACGCCATACATCAAAGATAACAGGCGAGGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGTTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTCATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTTCGCTCTCGAAGCGGTTTCTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGGTTCTTACCTAAACACTTATATCCTTATTAATATGTTGTTTTACATTTTTAGAAAATCATATGTGGTTTTTTTTTGCTGCAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCCAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATTACTTTCATGTCTACTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCTGCAGTAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTTGGTTGATGGTGGATATGCCAACACCAATTCTTTCCTTGCACCATATCGTAAAGTCAGGTATCATCTAAAGGAGTATGGGGCAGGTCGGCGTAGACCTCAAAACTACAAAGAGTTATTTAACCATCGCCATGCGGTATTGAGGAATCATGTTGAAAGGACTTTGGGGGTTGTAAAAAAGCGCTTCTCTATTCTCAAAGTTGCAACTTTCCACAAAATCAAGAACCAAGTGAAGATACCAGTGGCTGCTGCAGTGTTCCATAATATTATTCGATCACTGAATGGGGATGAGCAATGGTTAAATAACCAACCACATAATATCCATCCAAGCAATTATGTTGACCTGCCAGATGGTGATGAAGGCAATGATCAAAGCACTAATCAAGGGAATCTTTTGAGGGACACGATAGCACATCAAATGTGGAATGACTATCGACAGCATAGGAATTAGTGGGTTGTAATAAGTAGTATATTTGATTTTTTTTTTATGTTTTGTGAGCTGTAATAACTACGACATATTACAAATATTATGTTATAAATGAACTATGGTGGTTGCATGTGACATACATTTGCTACAATGCTTTTGTTATGAATATTGTGTTATGCATCCTTTCTCAGTTAATATGCTTGGAAGAGGTTCTCCAAGGTTGACCATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCCGAAAGGTCGTCCTACAAAAAAGCATGGAGGTTCTCCAATAGGTATGCAATTATAGAACATGTGAAATTCATGTTTGAAATTATTAAATGTAGATTATACATCAATTCTTATCTTGTGTAGAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGAGTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACAGATATGTCTGCTTAACAAAGTCCCAAATCCAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCAGAGATGCATCATTGAGGCTGAGCCTGCTATATGGAACAATATAATCATCGTAAGATTATTTCTGACCATTACTTAATTTTGTAGTTAATTACATTATGCATCTTTTTAGTGTTTTCCTTTTATTGTGTAGTCATTTCCTAAAGCCAAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGGAGAACTTTACGATGGTTAGTTCTATCACAAGCTATAATCCTTGTTTTCAATATCACAAGTTATAATCATGCTTTCTTGCTTACCCTTTCTTGTACTCAATTTTCTTGTGTAGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCAATCATTACTCAAGTTGAGAGTGATCAAGATGATCTTGGTAACACTGAGATTATATTTCCAGATTATGAGGACACCTTGACTTATCAAGTACAAGATGATGCAGATGCAACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCATAGAAGGGTTGTTGCTGTACCAAGAAACAAAGAAGAAAAAGAACCCAAGAGGCAAAAGAAGAGTGTTGGTGTAGAAGGACTTATGGAAAGGTACCTTGATATGAGGACCAAACAAACTGAAGATGAGGCTGCACAATTAGCAAGAGAAAAGGAGGCTCATTTAGCAAGAGAAAAGGAGGCTCAGTTAGCAAGAGAAAAGGAGGCTCATTTAGCAAGAGAAAAGGAGGCTTATTTAGCAAGAGAAAAGGAAAGTAATGATTTTTCAATCAAGAGGTGCATATCTGTTCTGAATTCGATGGATGTGAGAAAGGCAGAAAAGGTCAAAGCATATACCGTCTTCAAGAATGCAGAGAACAGAGAGATTTTTGTGAGTGCTTGTGATGAGGATCCAGAATCTGCCTTGAGTTGGTTAAGAAGTGAGATGGCTTGA
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| CDS seq | ATGGATATGAGAGCAAGAGACCGCGCTAGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACGCCATACATCAAAGATAACAGGCGAGGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGTTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTCATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTTCGCTCTCGAAGCGGTTTCTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCCAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATTACTTTCATGTCTACTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCTGCAGTAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTTGGTTGATGGTGGATATGCCAACACCAATTCTTTCCTTGCACCATATCGTAAAGTCAGGTATCATCTAAAGGAGTATGGGGCAGGTCGGCGTAGACCTCAAAACTACAAAGAGTTATTTAACCATCGCCATGCGGTATTGAGGAATCATGTTGAAAGGACTTTGGGGGTTGTAAAAAAGCGCTTCTCTATTCTCAAAGTTGCAACTTTCCACAAAATCAAGAACCAAGTGAAGATACCAGTGGCTGCTGCAGTGTTCCATAATATTATTCGATCACTGAATGGGGATGAGCAATGGTTAAATAACCAACCACATAATATCCATCCAAGCAATTATGTTGACCTGCCAGATGTTAATATGCTTGGAAGAGGTTCTCCAAGGTTGACCATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCCGAAAGGTCGTCCTACAAAAAAGCATGGAGGTTCTCCAATAGAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGAGTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACAGATATGTCTGCTTAACAAAGTCCCAAATCCAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCAGAGATGCATCATTGAGGCTGAGCCTGCTATATGGAACAATATAATCATCTCATTTCCTAAAGCCAAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGGAGAACTTTACGATGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCAATCATTACTCAAGTTGAGAGTGATCAAGATGATCTTGGTAACACTGAGATTATATTTCCAGATTATGAGGACACCTTGACTTATCAAGTACAAGATGATGCAGATGCAACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCATAGAAGGGTTGTTGCTGTACCAAGAAACAAAGAAGAAAAAGAACCCAAGAGGCAAAAGAAGAGTGTTGGTGTAGAAGGACTTATGGAAAGGTACCTTGATATGAGGACCAAACAAACTGAAGATGAGGCTGCACAATTAGCAAGAGAAAAGGAGGCTCATTTAGCAAGAGAAAAGGAGGCTCAGTTAGCAAGAGAAAAGGAGGCTCATTTAGCAAGAGAAAAGGAGGCTTATTTAGCAAGAGAAAAGGAAAGTAATGATTTTTCAATCAAGAGGTGCATATCTGTTCTGAATTCGATGGATGTGAGAAAGGCAGAAAAGGTCAAAGCATATACCGTCTTCAAGAATGCAGAGAACAGAGAGATTTTTGTGAGTGCTTGTGATGAGGATCCAGAATCTGCCTTGAGTTGGTTAAGAAGTGAGATGGCTTGA
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| Protein seq | MDMRARDRARKRREEEDDDMMLFIFPALHLLSSSGAREKKRRHTSKITGEERVRELLEGHVKNCRVAFRMEPEIFISLANYLRTEKLVDDTRIKVEEKLAFFLYMLSHNASFEDLQEKFGHSGDSFHRHVKHFFNSVVPSLSKRFLKPPNPNEVHWKIEKDPRFYPYFKNCLGAIDGTHIPISISSDKAAPFRNRKNTLSQNVMIACDFDLKITFMSTGWEGSATDARVLTSAVNKGFQVPPGKFYLVDGGYANTNSFLAPYRKVRYHLKEYGAGRRRPQNYKELFNHRHAVLRNHVERTLGVVKKRFSILKVATFHKIKNQVKIPVAAAVFHNIIRSLNGDEQWLNNQPHNIHPSNYVDLPDVNMLGRGSPRLTMLLAKAAQKKNSPKGRPTKKHGGSPIEKTRASWNPALEKILVELLHEHNTPEYRGQNGWTSEAWNKIVKEFHEKDRYVCLTKSQIQEKEKELKREYRMLKEARKQSGASWNNQRCIIEAEPAIWNNIIISFPKAKKFRTKSFPLFEALGELYDGHTAEGTYNFTSTEPLQHPIITQVESDQDDLGNTEIIFPDYEDTLTYQVQDDADATEDDNANAERLKEMPHRRVVAVPRNKEEKEPKRQKKSVGVEGLMERYLDMRTKQTEDEAAQLAREKEAHLAREKEAQLAREKEAHLAREKEAYLAREKESNDFSIKRCISVLNSMDVRKAEKVKAYTVFKNAENREIFVSACDEDPESALSWLRSEMA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g56830 | LOC_Os02g56830.1 | Chr02 | 34828492 | 34831322 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATATGAGAGCAAGAGACCGCGCTAGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACGCCATACATCAAAGATAACAGGCGAGGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGTTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTCATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTTCGCTCTCGAAGCGGTTTCTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCCAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATTACTTTCATGTCTACTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCTGCAGTAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTTGGTTGATGGTGGATATGCCAACACCAATTCTTTCCTTGCACCATATCGTAAAGTCAGGTATCATCTAAAGGAGTATGGGGCAGGTCGGCGTAGACCTCAAAACTACAAAGAGTTATTTAACCATCGCCATGCGGTATTGAGGAATCATGTTGAAAGGACTTTGGGGGTTGTAAAAAAGCGCTTCTCTATTCTCAAAGTTGCAACTTTCCACAAAATCAAGAACCAAGTGAAGATACCAGTGGCTGCTGCAGTGTTCCATAATATTATTCGATCACTGAATGGGGATGAGCAATGGTTAAATAACCAACCACATAATATCCATCCAAGCAATTATGTTGACCTGCCAGATGTTAATATGCTTGGAAGAGGTTCTCCAAGGTTGACCATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCCGAAAGGTCGTCCTACAAAAAAGCATGGAGGTTCTCCAATAGAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGAGTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACAGATATGTCTGCTTAACAAAGTCCCAAATCCAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCAGAGATGCATCATTGAGGCTGAGCCTGCTATATGGAACAATATAATCATCTCATTTCCTAAAGCCAAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGGAGAACTTTACGATGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCAATCATTACTCAAGTTGAGAGTGATCAAGATGATCTTGGTAACACTGAGATTATATTTCCAGATTATGAGGACACCTTGACTTATCAAGTACAAGATGATGCAGATGCAACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCATAGAAGGGTTGTTGCTGTACCAAGAAACAAAGAAGAAAAAGAACCCAAGAGGCAAAAGAAGAGTGTTGGTGTAGAAGGACTTATGGAAAGGTACCTTGATATGAGGACCAAACAAACTGAAGATGAGGCTGCACAATTAGCAAGAGAAAAGGAGGCTCATTTAGCAAGAGAAAAGGAGGCTCAGTTAGCAAGAGAAAAGGAGGCTCATTTAGCAAGAGAAAAGGAGGCTTATTTAGCAAGAGAAAAGGAAAGTAATGATTTTTCAATCAAGAGGTGCATATCTGTTCTGAATTCGATGGATGTGAGAAAGGCAGAAAAGGTCAAAGCATATACCGTCTTCAAGAATGCAGAGAACAGAGAGATTTTTGTGAGTGCTTGTGATGAGGATCCAGAATCTGCCTTGAGTTGGTTAAGAAGTGAGATGGCTTGA
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| Protein seq | MDMRARDRARKRREEEDDDMMLFIFPALHLLSSSGAREKKRRHTSKITGEERVRELLEGHVKNCRVAFRMEPEIFISLANYLRTEKLVDDTRIKVEEKLAFFLYMLSHNASFEDLQEKFGHSGDSFHRHVKHFFNSVVPSLSKRFLKPPNPNEVHWKIEKDPRFYPYFKNCLGAIDGTHIPISISSDKAAPFRNRKNTLSQNVMIACDFDLKITFMSTGWEGSATDARVLTSAVNKGFQVPPGKFYLVDGGYANTNSFLAPYRKVRYHLKEYGAGRRRPQNYKELFNHRHAVLRNHVERTLGVVKKRFSILKVATFHKIKNQVKIPVAAAVFHNIIRSLNGDEQWLNNQPHNIHPSNYVDLPDVNMLGRGSPRLTMLLAKAAQKKNSPKGRPTKKHGGSPIEKTRASWNPALEKILVELLHEHNTPEYRGQNGWTSEAWNKIVKEFHEKDRYVCLTKSQIQEKEKELKREYRMLKEARKQSGASWNNQRCIIEAEPAIWNNIIISFPKAKKFRTKSFPLFEALGELYDGHTAEGTYNFTSTEPLQHPIITQVESDQDDLGNTEIIFPDYEDTLTYQVQDDADATEDDNANAERLKEMPHRRVVAVPRNKEEKEPKRQKKSVGVEGLMERYLDMRTKQTEDEAAQLAREKEAHLAREKEAQLAREKEAHLAREKEAYLAREKESNDFSIKRCISVLNSMDVRKAEKVKAYTVFKNAENREIFVSACDEDPESALSWLRSEMA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0813200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g09280 | SBH | 0.164994 | 0.079818 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0813200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0022990 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0023060 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022790 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022710 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0582700 | SBH | 0 | 0.006303 | 0.012673 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022450 | SBH | 0.163992 | 0.135818 | 0.664510 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0376300 | SBH | 0.055807 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022890 | SBH | 0.158770 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022700 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0023080 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022580 | SBH | 0.158905 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023030 | SBH | 0.084022 | 0.0 | 0.190163 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022880 | SBH | 0.0 | 0.0 | 0.0 |
