Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g56080 | OGI:02096780 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:34321916-34324086 | ||||||||
| Gene Symbol | STR15, OsStr15 | ||||||||||
| DNA seq | TTAGGTGGCAACAGGCGGCCTGTCACACGCCTCGCCCCGTCCCGTCGGAATGATGAGAGTTTCCTGGCTCTCGTCCCTAGCCGGAGCCGGCGTGCTAACTCCTGGAGTTGGTATGTCAGTCCCGGTCAGATCCATTCCAGGCTTCAGCGCAAGTATGGCAAGGAAGTCGCTGGCCATTAAATGAAGGTTGAAATGGGCGTCCACCGGGAAAGCGGGCGAGCGGGGCAGGAGGCGTGTGCTCTGCTTGTCAGAGGTCACTTCCGGCTGTAGACGAGCCCTCATTGTAAAAAGCATGTTTCCCTTCTTAGGCAGCGAGAGGCCCATGTGGTGACCCCGGACCAGATAAAAAGGAGGCCCAGGCCTAGGAGGAAAAAGGGGAGGAAGGGGGGTTGGGACTCTGGGGAATGGGTTCTAGAGCCTGAACTCTCTCTCGCTCTCCAGCTCTCTGTATTCCTTCACGCACAGATCCACCAGAACACAGGAGTAGGGTGTTACGCTTCTCAGCGGCCCGAACCTGTCTACGTCGCCCGTGTCTTGTGCATTTCCTCTCCCGCTGACGTTCCTCAGATCGAGGGCGAAGAACCTCACTTAGCGCCCCCGGCCGAACCGGCAAAGGGGGGCCTGCGCAGTCTCCCGGTGAGGAGCCCCACGCTCCGTCACAGCTTATATGTACTATTACAAACAGAGATGATGAGAAACAAAGCTGAACTTTATACCTTGTTCATCAGGACACAACAATCACTGATCATGTACCGACTAGGCAGGTTGTTTGTTGCGTCAACTACTATGTCATATCTGTGATATTTTAGTAGTGTTGGAAACAGGAATAAGAACAAACAAAAGGACATGATTGATATTTCCTATTGCATTCTCAAGGATACTGTCGCATAATATCCAAAGCGTTGCTCGCATTCAAAGTGATATGATACTCGAACACCTTGATAGAGGAGTTAATTCTGATTTCATGAGAAACATATATAGAACTAATTGATATCACTTTGTAGGCACACATAAGTGAGATTGCTTTTACAATTTATATATGATAGATTATCTGCCCAAATGATAACATCTTACGCACGGCAAGAAGCAGCAGTTGATTTCACCTTTGGTTGTCCAACATATGCTTCTATGTGTATTATCTGTAAAAAAACATTGAGGAAGAATTTAAGATATTTAGCCTCCCTTAGATGTTTTACAAATTACAAGTCCTATTGTTGCCAAAAGCAAACCATGTAAGAAAATGCAAGCCACTAGTCTATGAAAATTAAAAAAAAAACTTAACTAGTCAATAAGTTCTTTCCACCCTGCAAGTTAATTAACCTAATAAAGTGGCAGTCGATGAGAGTGCCTTCCTAGGAAGTCATAACATTATAAATAGAGCTCCAATACCATCACATTTAGAAGAAAGTGCAAGAGAATATGGGGGACAGGTAACGGGTACCTGACGATGCAGGTTGTCAAGTTCAACTCGATCGCCATCAACAATACCTAAGCAACCTAACAAAATACACCAAGTAGTAAATCAAGCCATGGACGATTAATCACAAAAGGTATCATCGCATTCGAAGCAAAAATATCTGTTCCTCAGGAGAAGAGACATTCTTTCCGAATGAACTAGTACGATAATTGATACCTGATGAACAGCTCTTGTTGTAAAGGAAATCGCAATAATTTTTCCAAGTCAAATTACTACAATGTTTAGGGTGATAAAAAAAGGGGAATTCGCTTTTACCGACGCCACAAGCAGCCAGATACATGGCCACAGGCGAGCCCAATCCACCGGCACCGACCACCAGGATGGATGATTGGGACAGCTTCCGTTGCCCTGAAATAACAACGAGTGGATGAACAGTGGTAGTACAGGCTAGAAGCCAAGCAACGAGCGATGATGCTGAAGAGCTACCTTCGAGGCCGAACTGAGGGAGGAGGAGGTGGCGTCTGTAGCGGCTGATCATGTCGGCGGCGGCGGAGGAGGAGGAGGAGGGCGATCCCGTGGGCTCCACTTCGGCGGCGGCGGAGGGGGGAAGGGGAGCGGCGCCGAGGCGGAGCTGCGACTCGAGCAGGCGGATGCGGCCGTCCAGCTCCTCCCTCTCCGCGCGCAGCCTCTCGAGCTCGCGCATGATCGCCTCCGCCCTGCTCCTCCCGCCGTCGTCGTCGCCGCCGCCCTCCAT
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| CDS seq | ATGGAGGGCGGCGGCGACGACGACGGCGGGAGGAGCAGGGCGGAGGCGATCATGCGCGAGCTCGAGAGGCTGCGCGCGGAGAGGGAGGAGCTGGACGGCCGCATCCGCCTGCTCGAGTCGCAGCTCCGCCTCGGCGCCGCTCCCCTTCCCCCCTCCGCCGCCGCCGAAGTGGAGCCCACGGGATCGCCCTCCTCCTCCTCCTCCGCCGCCGCCGACATGATCAGCCGCTACAGACGCCACCTCCTCCTCCCTCAGTTCGGCCTCGAAGGGCAACGGAAGCTGTCCCAATCATCCATCCTGGTGGTCGGTGCCGGTGGATTGGGCTCGCCTGTGGCCATGTATCTGGCTGCTTGTGGCGTCGGTTGCTTAGGTATTGTTGATGGCGATCGAGTTGAACTTGACAACCTGCATCGTCAGATAATACACATAGAAGCATATGTTGGACAACCAAAGGTGAAATCAACTGCTGCTTCTTGCCGTGCATATGACATAGTAGTTGACGCAACAAACAACCTGCCTAGTCGGTACATGATCAGTGATTGTTGTGTCCTGATGAACAAGCCGGAAGTGACCTCTGACAAGCAGAGCACACGCCTCCTGCCCCGCTCGCCCGCTTTCCCGGTGGACGCCCATTTCAACCTTCATTTAATGGCCAGCGACTTCCTTGCCATACTTGCGCTGAAGCCTGGAATGGATCTGACCGGGACTGACATACCAACTCCAGGAGTTAGCACGCCGGCTCCGGCTAGGGACGAGAGCCAGGAAACTCTCATCATTCCGACGGGACGGGGCGAGGCGTGTGACAGGCCGCCTGTTGCCACCTAA
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| Protein seq | MEGGGDDDGGRSRAEAIMRELERLRAEREELDGRIRLLESQLRLGAAPLPPSAAAEVEPTGSPSSSSSAAADMISRYRRHLLLPQFGLEGQRKLSQSSILVVGAGGLGSPVAMYLAACGVGCLGIVDGDRVELDNLHRQIIHIEAYVGQPKVKSTAASCRAYDIVVDATNNLPSRYMISDCCVLMNKPEVTSDKQSTRLLPRSPAFPVDAHFNLHLMASDFLAILALKPGMDLTGTDIPTPGVSTPAPARDESQETLIIPTGRGEACDRPPVAT |
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| Function | Adenylyltransferase and sulfurtransferase MOCS3 [UniProtKB/Swiss-Prot:A3ACF3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g56080 | LOC_Os02g56080.1 | Chr02 | 34321916 | 34324086 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGGCGGCGGCGACGACGACGGCGGGAGGAGCAGGGCGGAGGCGATCATGCGCGAGCTCGAGAGGCTGCGCGCGGAGAGGGAGGAGCTGGACGGCCGCATCCGCCTGCTCGAGTCGCAGCTCCGCCTCGGCGCCGCTCCCCTTCCCCCCTCCGCCGCCGCCGAAGTGGAGCCCACGGGATCGCCCTCCTCCTCCTCCTCCGCCGCCGCCGACATGATCAGCCGCTACAGACGCCACCTCCTCCTCCCTCAGTTCGGCCTCGAAGGGCAACGGAAGCTGTCCCAATCATCCATCCTGGTGGTCGGTGCCGGTGGATTGGGCTCGCCTGTGGCCATGTATCTGGCTGCTTGTGGCGTCGGTTGCTTAGGTATTGTTGATGGCGATCGAGTTGAACTTGACAACCTGCATCGTCAGATAATACACATAGAAGCATATGTTGGACAACCAAAGGTGAAATCAACTGCTGCTTCTTGCCGTGCATATGACATAGTAGTTGACGCAACAAACAACCTGCCTAGTCGGTACATGATCAGTGATTGTTGTGTCCTGATGAACAAGCCGGAAGTGACCTCTGACAAGCAGAGCACACGCCTCCTGCCCCGCTCGCCCGCTTTCCCGGTGGACGCCCATTTCAACCTTCATTTAATGGCCAGCGACTTCCTTGCCATACTTGCGCTGAAGCCTGGAATGGATCTGACCGGGACTGACATACCAACTCCAGGAGTTAGCACGCCGGCTCCGGCTAGGGACGAGAGCCAGGAAACTCTCATCATTCCGACGGGACGGGGCGAGGCGTGTGACAGGCCGCCTGTTGCCACCTAA
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| Protein seq | MEGGGDDDGGRSRAEAIMRELERLRAEREELDGRIRLLESQLRLGAAPLPPSAAAEVEPTGSPSSSSSAAADMISRYRRHLLLPQFGLEGQRKLSQSSILVVGAGGLGSPVAMYLAACGVGCLGIVDGDRVELDNLHRQIIHIEAYVGQPKVKSTAASCRAYDIVVDATNNLPSRYMISDCCVLMNKPEVTSDKQSTRLLPRSPAFPVDAHFNLHLMASDFLAILALKPGMDLTGTDIPTPGVSTPAPARDESQETLIIPTGRGEACDRPPVAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.454167 | 0.220248 | 0.687284 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0804600 | SBH | 0.411554 | 0.046567 | 2.585574 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03880 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0804600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0037680 | RBH | 0.000000 | 0.0 | 2.510598 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0037690 | SBH | 0.000000 | 0.000000 | 0.730877 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0037590 | RBH | 0.509100 | 0.0 | 2.093908 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0037180 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037400 | SBH | 0.832883 | 0.000000 | 4.815880 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0561500 | SBH | 1.4327015 | 1.83285 | 6.170902 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0037080 | SBH | 0.000000 | 0.0 | 0.462291 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0592400 | SBH | 1.868492 | 1.841127 | 8.4851405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037350 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0037280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037380 | SBH | 0.0 | 3.091263 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037380 | SBH | 0.246637 | 0.171070 | 0.352811 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0037050 | SBH | 0.0 | 0.942953 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037640 | SBH | 0.064508 | 0.0 | 0.389373 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0037480 | SBH | 0.000000 | 0.0 | 1.938627 |
