Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g54560 | OGI:02094360 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:33424949-33426562 | ||||||||
| Gene Symbol | PR1-22, OsPR1#022, OsPR1-22 | ||||||||||
| DNA seq | GCACAAGTTTGCGAAAGGAGAAACAGAAAAGAGAAAACCCAGAGTGGTCAGGTTCAGAAGCCGACGAGGCAGCCGTTGCATGCATCGATCTCAACTTCTCTCAAGTTCAGAAGCGGCCGAAATGTCCGCGGACACGTACGTACACAGTACACGACAAGCCGGCCGGGCCTCCTGTGACAACGGTGGTGGGTTACACCGTTTGCGGGGCCTTGCGGCCACCACATGCATGTGCCGCCTGCCGCGCAGAAGCAATCTATGGCAAACCGCCCGGCCGACCGGCCGTGCTACCGATTCATCATAAGCCTGGAGTCCCTGGACCTTGTTGTAAGCTCGCGCGTGACCACGGAAGTATCTAGAAGCGGCCATTCATCGTCACGGGCGAGCTCACAGGTAACAAGGTAGGAGGAGAACAAGCTTTCATCAACAGATTTTGATGAACTATTGAAAAATCTGTAGTGCAGTATATACAGCAATCAATCATGGACCGTATGTTCGACGATCTCTCGTCAGCAACGATTCTTTCAGGTTTCTTCACAGAATCAAATCCGTGAAAGTCTTGGTGGCCTTTGTGATAACCAAAACAAACCCGCATTTGCATAAACAAACAAGCCATGATCGAAACGATGTCTCGAGATGTCAAAAATGTGGACAAAAATACCATCAATATGGCTACTACAGTTGCTCCCACCCACGGTCACGGGTGCCAGAGACAAACACTACACTATCAGCCACCGCATATAACTGCTTCCTCCAATCCCAAACCACAATTTCGTTGCAAACACAGCGACCAATAGGAGATCGAAGCCATGAAGCTGCTCGTGGCTCTGCTCGTTTCCACCCTTCTCGTCCACTCGCTGCTCGCCGACGGCAGCCGCCGAGGGAAGGAGGCGGCAGCGGCGGCGCTCGGGTACAGCAACGCGACGGTGTACGACATGTCCGTGGCGAAGTGCGCCGGGTGCGGCGCGCTGGGCGCGTGGGCGGAGTCGCTGGAGTTCCTCTACTACCACAACCTGGTGCGGCTGGCGCGGTGGGAGCTGCCGCTGGCGTGGTCGCCGCGGCTGGAGTCGTACGCGCGGTGGTGGGCGGCGCAGCGGCGCGGCGACTGCGCGCTGCGCCACTCGTTCCCGGAGGGGCAGTTCGCGCTCGGGGAGAACATCTTCTGGGGCGGGGCCGGCGGCGCGTGGCGCCCCGGCGACGCCGTCAAGGACTGGGCCGCCGAGGGCGTCGACTACTCGTACGCCGCCAACGCGTGCGCGGCCGGGCGCGAGTGCGGCCACTACACCCAGATCGTGTGGCGCGGCACCACCTCCGTCGGCTGCGCCCGCGTCGCCTGCGACGACGGCGGCGTCTTCATGACCTGCAACTACTACCCGCCGGGTAACGTCGTCGGCGAGAGGCCGTACTGAATGAGCAGTACACTAGGATACCACAGAGTTTGTCAGGATTGTCCTGGATGGAAATGATGGAATGAGATGTGCATGTACAGCTGCTGAATAAAAGTTTCAGGAATCAGGTGTGTGCAATCTGCATTTCTGAGTTACTGTCACTGTAAATACACTCACTGGTGGTTAAGTTCTTATACATTTCGTTACATCTAATGACCTTTTTACTAGA
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| CDS seq | ATGAAGCTGCTCGTGGCTCTGCTCGTTTCCACCCTTCTCGTCCACTCGCTGCTCGCCGACGGCAGCCGCCGAGGGAAGGAGGCGGCAGCGGCGGCGCTCGGGTACAGCAACGCGACGGTGTACGACATGTCCGTGGCGAAGTGCGCCGGGTGCGGCGCGCTGGGCGCGTGGGCGGAGTCGCTGGAGTTCCTCTACTACCACAACCTGGTGCGGCTGGCGCGGTGGGAGCTGCCGCTGGCGTGGTCGCCGCGGCTGGAGTCGTACGCGCGGTGGTGGGCGGCGCAGCGGCGCGGCGACTGCGCGCTGCGCCACTCGTTCCCGGAGGGGCAGTTCGCGCTCGGGGAGAACATCTTCTGGGGCGGGGCCGGCGGCGCGTGGCGCCCCGGCGACGCCGTCAAGGACTGGGCCGCCGAGGGCGTCGACTACTCGTACGCCGCCAACGCGTGCGCGGCCGGGCGCGAGTGCGGCCACTACACCCAGATCGTGTGGCGCGGCACCACCTCCGTCGGCTGCGCCCGCGTCGCCTGCGACGACGGCGGCGTCTTCATGACCTGCAACTACTACCCGCCGGGTAACGTCGTCGGCGAGAGGCCGTACTGA
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| Protein seq | MKLLVALLVSTLLVHSLLADGSRRGKEAAAAALGYSNATVYDMSVAKCAGCGALGAWAESLEFLYYHNLVRLARWELPLAWSPRLESYARWWAAQRRGDCALRHSFPEGQFALGENIFWGGAGGAWRPGDAVKDWAAEGVDYSYAANACAAGRECGHYTQIVWRGTTSVGCARVACDDGGVFMTCNYYPPGNVVGERPY |
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| Function | Pathogenesis-related protein 1 [UniProtKB/Swiss-Prot:Q05968] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g54560 | LOC_Os02g54560.1 | Chr02 | 33424949 | 33426562 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGCTGCTCGTGGCTCTGCTCGTTTCCACCCTTCTCGTCCACTCGCTGCTCGCCGACGGCAGCCGCCGAGGGAAGGAGGCGGCAGCGGCGGCGCTCGGGTACAGCAACGCGACGGTGTACGACATGTCCGTGGCGAAGTGCGCCGGGTGCGGCGCGCTGGGCGCGTGGGCGGAGTCGCTGGAGTTCCTCTACTACCACAACCTGGTGCGGCTGGCGCGGTGGGAGCTGCCGCTGGCGTGGTCGCCGCGGCTGGAGTCGTACGCGCGGTGGTGGGCGGCGCAGCGGCGCGGCGACTGCGCGCTGCGCCACTCGTTCCCGGAGGGGCAGTTCGCGCTCGGGGAGAACATCTTCTGGGGCGGGGCCGGCGGCGCGTGGCGCCCCGGCGACGCCGTCAAGGACTGGGCCGCCGAGGGCGTCGACTACTCGTACGCCGCCAACGCGTGCGCGGCCGGGCGCGAGTGCGGCCACTACACCCAGATCGTGTGGCGCGGCACCACCTCCGTCGGCTGCGCCCGCGTCGCCTGCGACGACGGCGGCGTCTTCATGACCTGCAACTACTACCCGCCGGGTAACGTCGTCGGCGAGAGGCCGTACTGA
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| Protein seq | MKLLVALLVSTLLVHSLLADGSRRGKEAAAAALGYSNATVYDMSVAKCAGCGALGAWAESLEFLYYHNLVRLARWELPLAWSPRLESYARWWAAQRRGDCALRHSFPEGQFALGENIFWGGAGGAWRPGDAVKDWAAEGVDYSYAANACAAGRECGHYTQIVWRGTTSVGCARVACDDGGVFMTCNYYPPGNVVGERPY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.523442 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0786900 | RBH | 0.0 | 0.0 | 2.107781 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0786900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036320 | RBH | 0.0 | 6.277832 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036420 | RBH | 0.000000 | 0.0 | 0.383003 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036260 | RBH | 0.0 | 2.657991 | 1.187974 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035850 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036040 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0546800 | RBH | 0.325831 | 0.2670635 | 4.1563065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035860 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0577500 | RBH | 1.119863 | 0 | 1.9253675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036120 | RBH | 0.0 | 0.145694 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036390 | RBH | 0.0 | 0.0 | 2.096171 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036130 | RBH | 0.0 | 0.0 | 2.335742 |
