Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g51670 | OGI:02089540 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:31648468-31650538 | ||||||||
| Gene Symbol | ERF49, OsERF#049, OsERF049, OsERF49, AP2/EREBP#132, AP2/EREBP132 | ||||||||||
| DNA seq | AGAGAGACGCCTCAACCCCACCCCAAGAACACCAAAGCCACATCCCATCCCATCCCAGTCCACGGTGAGGTTGAGCGATCTGAAAAAAATCATCAGCGACGAGCAGCAACAGGTTTGTTCTCTGAACTTCTCTGATCTTTTTAGAAGCAGGTAACACACAAGAAAGGTCCTGTCCCAAGAAGGTACTTCTTTCGGGTTTATTAGATCGAAAGAGGAGTTCTTGTGCGTACAGGTTCTTTCTCATCCCATCAACTTCTCCTAGGAGGAACAGAGATCCAGAGAACCTTTTTTCTCTTCTGGATTCTTGCCGATTTTTAGGCTTCCTTTGCTTTTCTAAGGCCAGAAAGGGTTGTTTTGCAATACCCTTCTAGTTCATCCTCTCAAATTTTTCTTCTTTCTATTCAAAAGCTCTTTCTTTCTTTGCACCCTTTGTTTCTCTACTTTTATTGAGGAACAGGGCTGATTTTTCACTTCTTGCATCCAAAAAGCACCCCTTTTTTCTTTCCTGTTTTTAAGATTTCCATACCCTTGCCATCTTCATCTTCTACCTCCATCCAGTCCTCATGGCCGCAGCAATAGACATGTACAAGTATAACACTAGCACACACCAGATCGCATCCTCGGATCAGGAGCTCATGAAAGCGCTCGAACCTTTTATTAGGAGCGCTTCTTCTTCCTCCGCTTCCTCCCCCTGCCACCACTACTACTCTTCTTCTCCTTCCATGAGCCAAGATTCTTACATGCCCACCCCATCTTATCCCACTTCCTCTATCACAACCGCCGCCGCCACCACCACCTCGTCTTTCTCGCAGCTACCTCCGCTGTACTCTTCGCAGTATCATGCTGCTTCACCTGCGGCGTCGGCGACGAACGGGCCGATGGGGCTGACCCACCTGGGCCCAGCCCAGATCCAGCAGATCCAGGCCCAGTTCTTGGCCCAGCAGCAGCAGCAGAGGGCCCTGGCCGGCGCCTTCCTTCGGCCGCGTGGCCAGCCGATGAAGCAGTCCGGGTCGCCGCCGCGCGCGGGGCCGTTCGCGGCGGTCGCCGGGGCGGCGCAGTCGAAGCTCTACCGCGGAGTGCGGCAGCGCCACTGGGGGAAGTGGGTGGCGGAGATCCGCCTCCCGAAGAACCGGACGCGGCTGTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCGCTCGCCTACGACAAGGCCGCCTTCCGCCTCCGCGGCGACCTCGCGCGGCTCAACTTCCCCACCCTCCGCCGCGGCGGCGCCCACCTCGCCGGCCCGCTCCACGCCTCCGTCGACGCCAAGCTCACCGCCATCTGCCAGTCCCTCGCCACGAGCTCGTCCAAGAACACCCCCGCCGAGTCAGCGGCCTCCGCGGCGGAGCCGGAGTCCCCCAAGTGCTCGGCGTCGACGGAAGGGGAGGACTCGGTGTCCGCCGGCTCCCCTCCTCCGCCCACGCCGCTGTCGCCCCCGGTGCCGGAGATGGAGAAGCTGGACTTCACGGAGGCGCCATGGGACGAGTCGGAGACATTCCACCTGCGCAAGTACCCGTCCTGGGAGATCGACTGGGACTCAATCCTCTCATAAACAAGCAGAAGCAGCTACTACTAGTCTATTACTAGTACTAGTAGTAGTCTTCGTCAAGCTAGAGTCACTCAACTCAACTAGCTGTGTAATCTTCTCTGAATTCCGTGGCTTCCATGGCTCGGTGGCATTTTAGACGTCGGCCATGGCTGCTGCGAGTAGCAGTAACTAGTCAGTACTCAGTAGTAGTAAGGTCGTTGGTATTACGTCGTCGTGCAAGTGTCGTTGGTGTACTCAGTGATCTGATCTCCTGGTTGAGCTGCCGGTTGTTTTTTTCACGGCGCGGCCGGTCGAGAATTAAGCTGTAATCCCTTGTTACATGTTGGAAATTCAGTAGCTTATGTAACTATATGTACCTTTCTCACGTGCTTGTCTGATCTATATGTGTGTAGTTGTGTACTCTCGAGTTGCCTAATCAGTTGTCATGCCTTCTGATTGTGATTATTATGTCTCCGATGCTACTATGCTAGCCTGCAATTGCTTACCATCAGATA
More
|
||||||||||
| CDS seq | ATGGCCGCAGCAATAGACATGTACAAGTATAACACTAGCACACACCAGATCGCATCCTCGGATCAGGAGCTCATGAAAGCGCTCGAACCTTTTATTAGGAGCGCTTCTTCTTCCTCCGCTTCCTCCCCCTGCCACCACTACTACTCTTCTTCTCCTTCCATGAGCCAAGATTCTTACATGCCCACCCCATCTTATCCCACTTCCTCTATCACAACCGCCGCCGCCACCACCACCTCGTCTTTCTCGCAGCTACCTCCGCTGTACTCTTCGCAGTATCATGCTGCTTCACCTGCGGCGTCGGCGACGAACGGGCCGATGGGGCTGACCCACCTGGGCCCAGCCCAGATCCAGCAGATCCAGGCCCAGTTCTTGGCCCAGCAGCAGCAGCAGAGGGCCCTGGCCGGCGCCTTCCTTCGGCCGCGTGGCCAGCCGATGAAGCAGTCCGGGTCGCCGCCGCGCGCGGGGCCGTTCGCGGCGGTCGCCGGGGCGGCGCAGTCGAAGCTCTACCGCGGAGTGCGGCAGCGCCACTGGGGGAAGTGGGTGGCGGAGATCCGCCTCCCGAAGAACCGGACGCGGCTGTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCGCTCGCCTACGACAAGGCCGCCTTCCGCCTCCGCGGCGACCTCGCGCGGCTCAACTTCCCCACCCTCCGCCGCGGCGGCGCCCACCTCGCCGGCCCGCTCCACGCCTCCGTCGACGCCAAGCTCACCGCCATCTGCCAGTCCCTCGCCACGAGCTCGTCCAAGAACACCCCCGCCGAGTCAGCGGCCTCCGCGGCGGAGCCGGAGTCCCCCAAGTGCTCGGCGTCGACGGAAGGGGAGGACTCGGTGTCCGCCGGCTCCCCTCCTCCGCCCACGCCGCTGTCGCCCCCGGTGCCGGAGATGGAGAAGCTGGACTTCACGGAGGCGCCATGGGACGAGTCGGAGACATTCCACCTGCGCAAGTACCCGTCCTGGGAGATCGACTGGGACTCAATCCTCTCATAA
More
|
||||||||||
| Protein seq | MAAAIDMYKYNTSTHQIASSDQELMKALEPFIRSASSSSASSPCHHYYSSSPSMSQDSYMPTPSYPTSSITTAAATTTSSFSQLPPLYSSQYHAASPAASATNGPMGLTHLGPAQIQQIQAQFLAQQQQQRALAGAFLRPRGQPMKQSGSPPRAGPFAAVAGAAQSKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEDAALAYDKAAFRLRGDLARLNFPTLRRGGAHLAGPLHASVDAKLTAICQSLATSSSKNTPAESAASAAEPESPKCSASTEGEDSVSAGSPPPPTPLSPPVPEMEKLDFTEAPWDESETFHLRKYPSWEIDWDSILS |
||||||||||
| Function | Ethylene-responsive transcription factor RAP2-4 [UniProtKB/Swiss-Prot:Q8H1E4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g51670 | LOC_Os02g51670.1 | Chr02 | 31648468 | 31650538 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGCAGCAATAGACATGTACAAGTATAACACTAGCACACACCAGATCGCATCCTCGGATCAGGAGCTCATGAAAGCGCTCGAACCTTTTATTAGGAGCGCTTCTTCTTCCTCCGCTTCCTCCCCCTGCCACCACTACTACTCTTCTTCTCCTTCCATGAGCCAAGATTCTTACATGCCCACCCCATCTTATCCCACTTCCTCTATCACAACCGCCGCCGCCACCACCACCTCGTCTTTCTCGCAGCTACCTCCGCTGTACTCTTCGCAGTATCATGCTGCTTCACCTGCGGCGTCGGCGACGAACGGGCCGATGGGGCTGACCCACCTGGGCCCAGCCCAGATCCAGCAGATCCAGGCCCAGTTCTTGGCCCAGCAGCAGCAGCAGAGGGCCCTGGCCGGCGCCTTCCTTCGGCCGCGTGGCCAGCCGATGAAGCAGTCCGGGTCGCCGCCGCGCGCGGGGCCGTTCGCGGCGGTCGCCGGGGCGGCGCAGTCGAAGCTCTACCGCGGAGTGCGGCAGCGCCACTGGGGGAAGTGGGTGGCGGAGATCCGCCTCCCGAAGAACCGGACGCGGCTGTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCGCTCGCCTACGACAAGGCCGCCTTCCGCCTCCGCGGCGACCTCGCGCGGCTCAACTTCCCCACCCTCCGCCGCGGCGGCGCCCACCTCGCCGGCCCGCTCCACGCCTCCGTCGACGCCAAGCTCACCGCCATCTGCCAGTCCCTCGCCACGAGCTCGTCCAAGAACACCCCCGCCGAGTCAGCGGCCTCCGCGGCGGAGCCGGAGTCCCCCAAGTGCTCGGCGTCGACGGAAGGGGAGGACTCGGTGTCCGCCGGCTCCCCTCCTCCGCCCACGCCGCTGTCGCCCCCGGTGCCGGAGATGGAGAAGCTGGACTTCACGGAGGCGCCATGGGACGAGTCGGAGACATTCCACCTGCGCAAGTACCCGTCCTGGGAGATCGACTGGGACTCAATCCTCTCATAA
More
|
|||||||
| Protein seq | MAAAIDMYKYNTSTHQIASSDQELMKALEPFIRSASSSSASSPCHHYYSSSPSMSQDSYMPTPSYPTSSITTAAATTTSSFSQLPPLYSSQYHAASPAASATNGPMGLTHLGPAQIQQIQAQFLAQQQQQRALAGAFLRPRGQPMKQSGSPPRAGPFAAVAGAAQSKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEDAALAYDKAAFRLRGDLARLNFPTLRRGGAHLAGPLHASVDAKLTAICQSLATSSSKNTPAESAASAAEPESPKCSASTEGEDSVSAGSPPPPTPLSPPVPEMEKLDFTEAPWDESETFHLRKYPSWEIDWDSILS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 15.860041 | 13.210875 | 4.329134 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0752800 | RBH | 11.575843 | 12.726970 | 4.662330 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11860 | RBH | 1.034350 | 1.420106 | 0.494407 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0752800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0034000 | RBH | 4.631022 | 100.131310 | 25.197252 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0034090 | RBH | 5.967901 | 41.914780 | 12.535565 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0033980 | RBH | 12.119602 | 64.858727 | 34.693008 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0033560 | RBH | 2.065840 | 2.050856 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0033620 | RBH | 49.358002 | 77.008514 | 92.237648 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0516800 | RBH | 20.2137585 | 179.5200275 | 10.9737655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0033440 | RBH | 2.697807 | 5.127761 | 5.880517 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0547100 | RBH | 20.872783 | 115.734581 | 4.997701 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0033690 | RBH | 2.846921 | 3.366452 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0033510 | RBH | 4.569490 | 90.758286 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0033840 | RBH | 31.653206 | 132.655548 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0033720 | RBH | 6.385962 | 9.126886 | 8.529469 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0033320 | RBH | 5.652540 | 42.154732 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G034010 | RBH | 1.977063 | 2.991461 | 7.209299 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0033710 | RBH | 16.125698 | 170.741821 | 36.670235 |
