Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g49210 | OGI:02084960 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:30081591-30085745 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTTTGAAAATATCACCTCAGTCCATGTCACCATGTTGCTGTTGTTGTATAACCTATCAAATTCTTCATAGCTCCAGTGTTCTGTCGATATCTGTTCTTCATACAATCTATCATGTTGATGTGACTCTTGAGGAGAAAACCTGCTTGTTGCCAAAATCATGGAATTCTATAGTGTAAAAATAAAAACTGTTAGCATTGCCTTTCAATATAAATTTTTCAAATTTGTTTAGCCTCTATTGTTGAAAAGTATTTGCTCACGGTAAATGCTACTGGTGTCTGTAGCAGATTTGTATATCTCTCTACTCGTTCCTGCAATTTTGAAAGTGGTTAGTAATCTGTTCATTTTTCTGTTTGCAGGGACAAATGTTTTTTTACTGAATATGCTTACTTCATTTGCTTGCAAGCTGACACGTGGACTTTGAATTATCTGTTGCATGAGGTTAGTGTAGCTCATTTGTCCTCCCTAAACCTGTTTTATTTAATTACATTTATTCGTCAAAGAAATAAATATATTCTTCATTTTTGTAAAGCATGATTGTACTTACTAGTCTTTCATTTTCATTAAGAAATGTGTATTGATCATAAAGTAGTTGTGCTTTATTTTCGCACATCTCTGATCCAATTGTCCCTGACTTTTTGCATTTTTCAAAATCCTGCAGGTAATGAGATCCTGGAATTGAAAAAGAAAGCATCATTAGTCAAAATCAGTGTAAGTACTGCAAAAATTCACCTCTAATTTTTGAGGCATACTAATGCATTATCCATAGCCTCTAATTCTTCATATGATGTTTTTTGCTTAATGTATTTGACTTATATTCCAGTTACAGTCCATATGCACCATAATTATAGTTGTAACTTCTGTTATTTCTCACTGTAACTGAATATAGGTAGTTAGATTATTTTTTTTATCATGCTTCACCTCTAATTTTTGCCTTATATAAATTTGTGTTATCTGGGTGATAATGTGTTTGCATGCTGCATGTTCAGATGCTCCTCTATTTCTTTTTAAAAGAAGATGTTAGTTCTAGCTAGGAATGCCTCATATTTGCTTAAGATCTTTGTTTCTGTTTTTAGAATGAATATTTTAAGTGCAGCCAAGTTTTTTTTGTACAAACCTAGTACTACTGAATAAAGATTAATTATACAAATGTAGTTTTTGATTACTATTGACTGCTAGTACTAGACCGGACTGCATCTACATGCTATATTCTAAATCTGATTTGATTCCAGTCACAGTCCAGTTACAGTCCATATGCACTGCAATTACATTTGTAATTTCTTTTGTTTCTCACTGTAACTGAATATACAGTTGTAATTTTTTTGGTAAATTATCACTGTAATTTTTTGTCATGCTTCATGACTAATTTTTCACATACATAAATTTTTGCTAGATGAAATTTTCTATGAAGATCAGATATGATGCACAATAATAGGCAAGCATGATTTTCTAACCTTCAACTGTCTTCTTTCTTCTTAATTCTTCAGTTCTATTTCCTGTTACTTGAGACTTTGTTCTATCAGCCCCTACATGTAATTTAATTTAAATCAAGTATTTGTTGGTGCATGTAATAGAAATATTTTAGAGTAGCATGTTAGTTTTATATGTTCTAGGTAATCTGACTACCTAACTTAAATATTTTTGGGTTTCATGTAATCTGAAAATACAGTGATTCTAACTTAAAACATACTTACAGTACAACTCATCACCACTTACAGTCCAGTTACAGTGAAATTATACCTCAGTTACAGTTGTAATTTCTGTTATCTCTCACTGTAAGTGACTGTTGGTAGTTAGATTTTGTAACTGATTGACCTTGGGTTTATTACTGATTTGTGTGAAAACTAGGACACTTGTAGTTTGGGAACCCTAGTGACTCTTTTTTTGTAAGTTGTGCATGCAAAAGTTACACTAAAATTCAACACCACTTACCCTGAGTTACAGTTGTACCTGATTGCTCTTTCTTCATAGTTTCATTGTTCTGCAAATTGGCATTCTTCAAACTTTCACTATCAGATACTAGCCCTGCAAAATATGTTGGAAAAACATTAGAAAGCATGTATGCCTGGCAACATCGTACAGAAAATTATAAGTATTGATGTAGCCATGTTATTTTCTAGTCCTTTTCTCCAATTACACCACTTACAATGCAATCCTTCAATAATTACAGTGCAGTTACAGTCGATTTGTGCCTTAGTTACATTTGTAACTTTGGTACTGCTATACTGTAACTTTAGTTCATTGCATACTTGATTGTGCCATTTTTGTTCTTCTTTTTATATTTTCTAGGTTTTGCAAGTTCATATCCTTCTTGTTTTGCCCATCTGATTTTATTCCTGCAAAATATGGTTCAAATCATTGCAAAAAATGTCCATTCAAAATCATCCTATATCAAATTATTCCTTTCTAGTTCAGTTACATGGCAACTTGACTGCAAGTTACTTTTGTATTTATCTCTAGAAACTCTACTCTGAAATTTTTCTTGTTGGGGGCTACAAGTGTTTAGTTCCTACTGATTCTTTTGTTTGAGTTTGCATGCTAGGTTGATTTTTGAAGGGGTTACTAAAATGTGATATGTAAAGTATAAACTTAATCTTGTCAAATTCAGAGTGCTACTAGTGTGGTTGGATACATCCCCTGGAGATTGAACTAGTGGATACTGTACCTGATTGCTCTTTCTTCATAGTTTCCTTGTTCTGCCAATTGGTATTCTTCAAACTTTCACTTTCAGATACTAGTCTTGCAAAATGTGTTGGAAAAATATTAGAAAGCATGTATACCTGGCAGCATCATACAGAAAATTATAAGTGTAGATGTAGGCCCTTTTTTTTTCTAGTTCTTGTCTCCACTTACACCACTTACAGTGCAATCATTCACTAATTACAGTGCAGTTACAGTCGATTTGTGCCTTAGTTACATTTGTAACTTTAGTACTGCTATACTGTAACTTTAGTTCATTGCATACCTGATTGTGCCATTTTTGTTCTTCTTTTTATATTTTCTAGGTTTTGCAAGTTCATATCCTTCTTGTTTTGCCCATCTGATTTTATTCCTGCAAAATATGGTTCAAATCATTGCAAAAAATGTCCATTCAAAATCATCCTTTTAGTTCAGTTACATGGCAACTTGACTGCAAGTTACTTTTGTATTTATCTCTATAAACTCTACTTTGAAATTTTTCTTGTTGGGGGCTACAAGTGTTTAGTTCCTACTGATTCTTTTGTTTGAGTTTGCATGCTAGGTTGATTTTTGAAGGGGTTACTAAAATGTGATATGTAAAGTATAAACTTAATCTTGTCAAATTCAGAGTGCTACTAGTGTGGTTGGATACATCCCCTGGAGATTGAACTAGTGGATACTGTACCTGATTGCTCTTTCTTCATAGTTTCCTTGTTCTGCCAATTGGTATTCTTCAAACTTTCACGTTCAGATACTAGTCCTGCAAAATGTGTTGGAAAAACATTAGAAAGCATGTAAGCCTGGTAGCATCATACAAAAAATTATAAGTGTAGATGTAGGCCCTTTTTTTTCTAGTTGTTGTCTCCACTTACACCACTTACAGTGCAATCATTCACTAATTACAGTGCAGTTACAGTCGATTTGTGCCTTAGTTACATTTGTAACTTTGGTACTGCTATACTGTAACTTTAGTTCATTGCATACATGATTGTGCCATTTTTGTTCTTCTTTTTATATTTTCCAGGTACTGTGCTATCAGTTCAAAAACATGGGGCTGAATGTTCAAGTGTTCCAGGTACTGTGCTATCAGTTCAAAAACATGAGGTTGATTATTGGAGCTATGATATTTAGCATATATGGTTTTTCTAAATTCATAAGTATGTGTCTTGTGTGTTTGTACAGCATATATGCTTTTGTATGATTGATTTGTTGCCCAAACTTACATACTCACTACTGCATTATCTAAAGAAATTCGCTGTTCTATTGTGTTTTCTCCAAGATTTTGAGATCTGAGTTGTTCTTGTTGATTTTGAAGGTTAATTATGGCAGAAATCAGTACCAAAAAGCTATAGAGGGAGTTGAGGTAGGTATATATTTACCTGGTAGATTGGTTTTGGTTGAATTCAACCTATTGATCTCCATCTTCTCGGTGATAATCTGCTTGTTTTTCTTTTTCTCTTTCTCGTCGCTGTCCAT
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| CDS seq | ATGGACAGCGACGAGAAAGAGAAAAAGAAAAACAAGCAGATTATCACCGAGAAGATGGAGATCAATAGGTTGAATTCAACCAAAACCAATCTACCAGGACTAGTATCTGAACGTGAAAGTTTGAAGAATACCAATTGGCAGAACAAGGAAACTATGAAGAAAGAGCAATCAGGAATAAAATCAGATGGGCAAAACAAGAAGGATATGAACTTGCAAAACCTAGAAAATATAAAAAGAAGAACAAAAATGGCACAATCAGGAATAAAATCAGATGGGCAAAACAAGAAGGATATGAACTTGCAAAACCTAGAAAATATAAAAAGAAGAACAAAAATGGCACAATCAAGGCTAGTATCTGATAGTGAAAGTTTGAAGAATGCCAATTTGCAGAACAATGAAACTATGAAGAAAGAGCAATCAGGTACAACTGTAACTCAGGGGGCTGATAGAACAAAGTCTCAAGTAACAGGAAATAGAACTGAAGAATTAAGAAGAAAGAAGACAGTTGAAGGATCTCATTACCTGCAGGATTTTGAAAAATGCAAAAAGTCAGGGACAATTGGATCAGAGATGTGCGAAAATAAAGCACAACTACTTTATGATCAATACACATTTCTTAATGAAAATGAAAGACTAGGAGGACAAATGAGCTACACTAACCTCATGCAACAGATAATTCAAAGTCCACGTGTCAGCTTGCAAGCAAATGAAAATTCCATGATTTTGGCAACAAGCAGGTTTTCTCCTCAAGAGTCACATCAACATGATAGATTGTATGAAGAACAGATATCGACAGAACACTGGAGCTATGAAGAATTTGATAGGTTATACAACAACAGCAACATGGTGACATGGACTGAGGTGATATTTTCAAACTAA
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| Protein seq | MDSDEKEKKKNKQIITEKMEINRLNSTKTNLPGLVSERESLKNTNWQNKETMKKEQSGIKSDGQNKKDMNLQNLENIKRRTKMAQSGIKSDGQNKKDMNLQNLENIKRRTKMAQSRLVSDSESLKNANLQNNETMKKEQSGTTVTQGADRTKSQVTGNRTEELRRKKTVEGSHYLQDFEKCKKSGTIGSEMCENKAQLLYDQYTFLNENERLGGQMSYTNLMQQIIQSPRVSLQANENSMILATSRFSPQESHQHDRLYEEQISTEHWSYEEFDRLYNNSNMVTWTEVIFSN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g49210 | LOC_Os02g49210.1 | Chr02 | 30081591 | 30085745 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACAGCGACGAGAAAGAGAAAAAGAAAAACAAGCAGATTATCACCGAGAAGATGGAGATCAATAGGTTGAATTCAACCAAAACCAATCTACCAGGACTAGTATCTGAACGTGAAAGTTTGAAGAATACCAATTGGCAGAACAAGGAAACTATGAAGAAAGAGCAATCAGGAATAAAATCAGATGGGCAAAACAAGAAGGATATGAACTTGCAAAACCTAGAAAATATAAAAAGAAGAACAAAAATGGCACAATCAGGAATAAAATCAGATGGGCAAAACAAGAAGGATATGAACTTGCAAAACCTAGAAAATATAAAAAGAAGAACAAAAATGGCACAATCAAGGCTAGTATCTGATAGTGAAAGTTTGAAGAATGCCAATTTGCAGAACAATGAAACTATGAAGAAAGAGCAATCAGGTACAACTGTAACTCAGGGGGCTGATAGAACAAAGTCTCAAGTAACAGGAAATAGAACTGAAGAATTAAGAAGAAAGAAGACAGTTGAAGGATCTCATTACCTGCAGGATTTTGAAAAATGCAAAAAGTCAGGGACAATTGGATCAGAGATGTGCGAAAATAAAGCACAACTACTTTATGATCAATACACATTTCTTAATGAAAATGAAAGACTAGGAGGACAAATGAGCTACACTAACCTCATGCAACAGATAATTCAAAGTCCACGTGTCAGCTTGCAAGCAAATGAAAATTCCATGATTTTGGCAACAAGCAGGTTTTCTCCTCAAGAGTCACATCAACATGATAGATTGTATGAAGAACAGATATCGACAGAACACTGGAGCTATGAAGAATTTGATAGGTTATACAACAACAGCAACATGGTGACATGGACTGAGGTGATATTTTCAAACTAA
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| Protein seq | MDSDEKEKKKNKQIITEKMEINRLNSTKTNLPGLVSERESLKNTNWQNKETMKKEQSGIKSDGQNKKDMNLQNLENIKRRTKMAQSGIKSDGQNKKDMNLQNLENIKRRTKMAQSRLVSDSESLKNANLQNNETMKKEQSGTTVTQGADRTKSQVTGNRTEELRRKKTVEGSHYLQDFEKCKKSGTIGSEMCENKAQLLYDQYTFLNENERLGGQMSYTNLMQQIIQSPRVSLQANENSMILATSRFSPQESHQHDRLYEEQISTEHWSYEEFDRLYNNSNMVTWTEVIFSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031860 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0031840 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031530 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0490900 | RBH | 0.0226775 | 0.141397 | 0.138046 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031300 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0518900 | RBH | 0.04989 | 0.294058 | 0.0774775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0031610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0031750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031600 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0031220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031880 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031640 | SBH | 0.0 | 0.0 | 0.0 |
