Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g48080 | OGI:02083020 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:29429761-29432460 | ||||||||
| Gene Symbol | ECK1 | ||||||||||
| DNA seq | GCCAGCACAACAGTAAGCACTAAGCCACTAACGAGCCAATCTTCAGATTAAGGCTAAGCTAGCTAGCTAGCCTGCAACCTCTCTCCAACAACCCAATAGTGACGAGAGGTATATATTCCTGCAGAGAAGCAGTGCAAAATTTCCCAAGGCTTTCTCTCATCAGAGAACTGGTTTTGATGAAGAGCCGGGGAGAAGAAGGCGAGGCTGGATCGTCGTTGTACCGTTTTCGACATCGCCGGCTGATGGATACAACACCCGCGACTGATTCAGGAGGTACGTACGCGCAGTTTTCTTTCTTGCTGAAGATATTGCAGTGTGTGTATGTTCGTGTTCTTGAGTTGGAAGAAGGTGACTGAACTGGCGTCAGGGTACGCGTTCTTGGTTTGTTGCACCAGGGCACTCGAGCCACAATGGGATGCCGATAATGGTGTCGATTCTGGTGGTGGTCATCATCTGCACCCTCTTCTACTGCGTGTACTGCTGGAGATGGAGGAAGCGCAACGGTAAGATCGATCGATCGATCGATTATTCAGCCATGATCAATCCGCAAACGCTGCAAATTTGTGAATTGTTACATTTGGTTTTCTTGGTTCCTTTGCAGCCGTCAGGAGGGCGCAGATAGAGAGCCTGAGGCCACTGTCCAACTCGGACCTGCCTCTCATGGACCTCTCCTCCATGTACGACGCCACCAACCAATTCTCCAAGGAGAACAAGCTCGGCGAAGGCGGCTTCGGCCCTGTCTACAGGGTATGAACACCAGCAAATTTTTCTAGATTTTGTCCTGGAAATAGCACTACTCCTGATATATGCCAATTTGCATCGACTGAAGTTTGGGTTCTTGGATGTGATGATCAGGGTGTTCTGGGCGGTGGCGCGGAGATCGCGGTGAAGCGGCTGTCGGCGAGGTCGCGGCAGGGCGCGGCGGAGTTCAGGAACGAGGTGGAGCTGATCGCCAAGCTGCAGCACAGGAACCTGGTCAGGCTGCTTGGCTGCTGCGTGGAGAAGGAGGAGAAGATGCTCATCTACGAGTACCTCCCTAACAGAAGCCTCGATGCCTTCCTCTTCGGTTCGTCTGCTTCCTCTCTCTTTGTTACTGTTTTTTTGTTTTGTTTTGTTTTGTCATTATAAATTCTTGCAGGATTATAGGTATTTTTTGTGATTGTTTGAATTTGTTAGTGGCTGGTGAGAAACTGATACACATGGGATACGCACATGATTGCGTCAAAGCTGGACTCGTGGTTCTGCACTCTGCATAATTTATTGTTTTTTCGAGTCGTTTAAGTCTAACGAAGTTACCAAATCGATGCAAAGTAGGTCAATGGGAAGCAAACTAGGTCCATGTGCTTCGTGCGTGTAGTTAAACCCGATTGGAATTATAAACTGTTCAGATTAACCGATCTGACCTGTACTGAAGCTCTGTTTCATTTCATCTTGGAACACTGAAAGTCTAAAACTAAAGTAACCATGAGGTAAATCTAATTCGGTTTTGTCTCGTCAGATTCCAGAAAGAGGGCTCAATTGGACTGGAAGACTCGGCAGAGCATCATCCTTGGGATCGCCCGTGGTTTGCTCTACCTCCACGAGGATTCATGTCTCAAGGTCATCCACAGAGACCTCAAGGCGAGCAATGTGCTCCTCGACAACAAGATGAACCCTAAGATCTCCGACTTCGGCATGGCCAAGATCTTCGAGGAGGAGAGCAACGAGGTCAACACCGGACACGTCGTAGGCACATAGTACGTCAACGTATTTGCACTATGTGCATCGATCACCTGATTTCTCATGGCTCATCAAGCACAAATCTTACCTCAACTTGTATTGAAATGAACCGATGGATTTTGCAGTGGGTACATGGCGCCGGAGTACGCGATGGAGGGCGTCTTCTCGGTGAAGTCTGACGTGTTCAGCCTCGGCGTTCTTGTGCTCGAGATCCTCAGCGGCCAACGCAATGGCGCAATGTACCTTCAGAATAACCAGCAAACCCTGATCCAAGATGTAAAAAAAAAATTCAGAAACTTTTTGCATCAAACTCTTTCTGGTAAAAAAAAAAGCAGAGTCTTTTTTTTTTAACTTGTTTGTGTTCATATGAACGTGTGCAGGCATGGAAGCTGTGGAACGAGGACAAGGCGGCGGAGTTCATGGACGCGTCGCTCGCCGGCGACTACTCGAAGGAGGAGGCGTGGCGGTGCTTCCACGTCGGGCTGCTGTGCGTGCAGGAGAGCCCCGAGCTCCGGCCGACCATGTCCAACGTGGTGCTCATGCTCATCAGCGACCAGATGCAGCTGCCGGAGCCCGCGCAGCCGCCGCTGTTCGCGGCGCGGGAGATGAAGAAGGTCTCGGCGTCGGAGTTCTCGCTGGCGATGAAGACGGAGACCACCAAGACGCAGTCCGTCAACGACGTGTCCATCTCCATGATCGAGCCACGATAAAAAAGAAGAAAGAAAAAAAAACGTCGTTTTTTTTCTTCTTTTTTTATTTCTCTCTCTCTCTCTCTCAAACTGTGTTTATTACGAGAGTTTTGATAAGCTAGTGGTGATGGAGATTGAGAAAAATAAGAAACAAATAACAGCGTGGAGATAAAAAAATCGACAGGGAGCTTGACAGATTGTTTCATTCTTTGGTCGTCATACCCACAAGTACTTGTAAATATCATCAGTTCACTGAAAGAAAAAGTACTTGTGAACACTGTTACTAGTGACA
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| CDS seq | ATGAAGAGCCGGGGAGAAGAAGGCGAGGCTGGATCGTCGTTGTACCGTTTTCGACATCGCCGGCTGATGGATACAACACCCGCGACTGATTCAGGAGGGCACTCGAGCCACAATGGGATGCCGATAATGGTGTCGATTCTGGTGGTGGTCATCATCTGCACCCTCTTCTACTGCGTGTACTGCTGGAGATGGAGGAAGCGCAACGCCGTCAGGAGGGCGCAGATAGAGAGCCTGAGGCCACTGTCCAACTCGGACCTGCCTCTCATGGACCTCTCCTCCATGTACGACGCCACCAACCAATTCTCCAAGGAGAACAAGCTCGGCGAAGGCGGCTTCGGCCCTGTCTACAGGGGTGTTCTGGGCGGTGGCGCGGAGATCGCGGTGAAGCGGCTGTCGGCGAGGTCGCGGCAGGGCGCGGCGGAGTTCAGGAACGAGGTGGAGCTGATCGCCAAGCTGCAGCACAGGAACCTGGTCAGGCTGCTTGGCTGCTGCGTGGAGAAGGAGGAGAAGATGCTCATCTACGAGTACCTCCCTAACAGAAGCCTCGATGCCTTCCTCTTCGATTCCAGAAAGAGGGCTCAATTGGACTGGAAGACTCGGCAGAGCATCATCCTTGGGATCGCCCGTGGTTTGCTCTACCTCCACGAGGATTCATGTCTCAAGGTCATCCACAGAGACCTCAAGGCGAGCAATGTGCTCCTCGACAACAAGATGAACCCTAAGATCTCCGACTTCGGCATGGCCAAGATCTTCGAGGAGGAGAGCAACGAGGTCAACACCGGACACGTCGTAGGCACATATGGGTACATGGCGCCGGAGTACGCGATGGAGGGCGTCTTCTCGGTGAAGTCTGACGTGTTCAGCCTCGGCGTTCTTGTGCTCGAGATCCTCAGCGGCCAACGCAATGGCGCAATGTACCTTCAGAATAACCAGCAAACCCTGATCCAAGATGCATGGAAGCTGTGGAACGAGGACAAGGCGGCGGAGTTCATGGACGCGTCGCTCGCCGGCGACTACTCGAAGGAGGAGGCGTGGCGGTGCTTCCACGTCGGGCTGCTGTGCGTGCAGGAGAGCCCCGAGCTCCGGCCGACCATGTCCAACGTGGTGCTCATGCTCATCAGCGACCAGATGCAGCTGCCGGAGCCCGCGCAGCCGCCGCTGTTCGCGGCGCGGGAGATGAAGAAGGTCTCGGCGTCGGAGTTCTCGCTGGCGATGAAGACGGAGACCACCAAGACGCAGTCCGTCAACGACGTGTCCATCTCCATGATCGAGCCACGATAA
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| Protein seq | MKSRGEEGEAGSSLYRFRHRRLMDTTPATDSGGHSSHNGMPIMVSILVVVIICTLFYCVYCWRWRKRNAVRRAQIESLRPLSNSDLPLMDLSSMYDATNQFSKENKLGEGGFGPVYRGVLGGGAEIAVKRLSARSRQGAAEFRNEVELIAKLQHRNLVRLLGCCVEKEEKMLIYEYLPNRSLDAFLFDSRKRAQLDWKTRQSIILGIARGLLYLHEDSCLKVIHRDLKASNVLLDNKMNPKISDFGMAKIFEEESNEVNTGHVVGTYGYMAPEYAMEGVFSVKSDVFSLGVLVLEILSGQRNGAMYLQNNQQTLIQDAWKLWNEDKAAEFMDASLAGDYSKEEAWRCFHVGLLCVQESPELRPTMSNVVLMLISDQMQLPEPAQPPLFAAREMKKVSASEFSLAMKTETTKTQSVNDVSISMIEPR |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase B120 [UniProtKB/Swiss-Prot:O81906] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g48080 | LOC_Os02g48080.1 | Chr02 | 29429761 | 29432460 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGAGCCGGGGAGAAGAAGGCGAGGCTGGATCGTCGTTGTACCGTTTTCGACATCGCCGGCTGATGGATACAACACCCGCGACTGATTCAGGAGGGCACTCGAGCCACAATGGGATGCCGATAATGGTGTCGATTCTGGTGGTGGTCATCATCTGCACCCTCTTCTACTGCGTGTACTGCTGGAGATGGAGGAAGCGCAACGCCGTCAGGAGGGCGCAGATAGAGAGCCTGAGGCCACTGTCCAACTCGGACCTGCCTCTCATGGACCTCTCCTCCATGTACGACGCCACCAACCAATTCTCCAAGGAGAACAAGCTCGGCGAAGGCGGCTTCGGCCCTGTCTACAGGGGTGTTCTGGGCGGTGGCGCGGAGATCGCGGTGAAGCGGCTGTCGGCGAGGTCGCGGCAGGGCGCGGCGGAGTTCAGGAACGAGGTGGAGCTGATCGCCAAGCTGCAGCACAGGAACCTGGTCAGGCTGCTTGGCTGCTGCGTGGAGAAGGAGGAGAAGATGCTCATCTACGAGTACCTCCCTAACAGAAGCCTCGATGCCTTCCTCTTCGATTCCAGAAAGAGGGCTCAATTGGACTGGAAGACTCGGCAGAGCATCATCCTTGGGATCGCCCGTGGTTTGCTCTACCTCCACGAGGATTCATGTCTCAAGGTCATCCACAGAGACCTCAAGGCGAGCAATGTGCTCCTCGACAACAAGATGAACCCTAAGATCTCCGACTTCGGCATGGCCAAGATCTTCGAGGAGGAGAGCAACGAGGTCAACACCGGACACGTCGTAGGCACATATGGGTACATGGCGCCGGAGTACGCGATGGAGGGCGTCTTCTCGGTGAAGTCTGACGTGTTCAGCCTCGGCGTTCTTGTGCTCGAGATCCTCAGCGGCCAACGCAATGGCGCAATGTACCTTCAGAATAACCAGCAAACCCTGATCCAAGATGCATGGAAGCTGTGGAACGAGGACAAGGCGGCGGAGTTCATGGACGCGTCGCTCGCCGGCGACTACTCGAAGGAGGAGGCGTGGCGGTGCTTCCACGTCGGGCTGCTGTGCGTGCAGGAGAGCCCCGAGCTCCGGCCGACCATGTCCAACGTGGTGCTCATGCTCATCAGCGACCAGATGCAGCTGCCGGAGCCCGCGCAGCCGCCGCTGTTCGCGGCGCGGGAGATGAAGAAGGTCTCGGCGTCGGAGTTCTCGCTGGCGATGAAGACGGAGACCACCAAGACGCAGTCCGTCAACGACGTGTCCATCTCCATGATCGAGCCACGATAA
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| Protein seq | MKSRGEEGEAGSSLYRFRHRRLMDTTPATDSGGHSSHNGMPIMVSILVVVIICTLFYCVYCWRWRKRNAVRRAQIESLRPLSNSDLPLMDLSSMYDATNQFSKENKLGEGGFGPVYRGVLGGGAEIAVKRLSARSRQGAAEFRNEVELIAKLQHRNLVRLLGCCVEKEEKMLIYEYLPNRSLDAFLFDSRKRAQLDWKTRQSIILGIARGLLYLHEDSCLKVIHRDLKASNVLLDNKMNPKISDFGMAKIFEEESNEVNTGHVVGTYGYMAPEYAMEGVFSVKSDVFSLGVLVLEILSGQRNGAMYLQNNQQTLIQDAWKLWNEDKAAEFMDASLAGDYSKEEAWRCFHVGLLCVQESPELRPTMSNVVLMLISDQMQLPEPAQPPLFAAREMKKVSASEFSLAMKTETTKTQSVNDVSISMIEPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.733271 | 0.507594 | 0.080507 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0710500 | RBH | 1.164250 | 0.798859 | 0.337554 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g30130 | RBH | 0.254376 | 0.090537 | 1.236498 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0710500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030920 | RBH | 0.116580 | 20.263485 | 1.916422 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031010 | RBH | 0.000000 | 3.590607 | 0.184446 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030890 | RBH | 0.364422 | 25.114096 | 2.521735 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030480 | RBH | 0.048508 | 0.357766 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030640 | RBH | 0.697425 | 16.085575 | 5.284946 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0479300 | RBH | 0.6732315 | 21.983491 | 0.08222 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030390 | RBH | 0.025712 | 1.569900 | 0.271530 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0507400 | RBH | 1.38232 | 7.753109 | 0.349228 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030460 | RBH | 0.0 | 7.346585 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030830 | RBH | 0.0 | 17.846447 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030660 | RBH | 0.260151 | 1.277732 | 0.489861 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030280 | RBH | 0.0 | 12.163330 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030940 | RBH | 0.489827 | 1.900913 | 1.368090 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030710 | RBH | 0.000000 | 41.642551 | 1.973016 |
