Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g47560 | OGI:02082140 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:29059281-29062623 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGGATGGAATCATGGATATGACACATAATCAAATATAATCAGATAATTCCGCTGTCATGCAGCGGAAACCTGGAATTTCCAAATGAAATGCACCTTTTCTAAAAATTTTCAAATCAATTGTGAAATGCCAATTTACTATACATTTCCTTTGTGGGCAGTATTTATCCTTGTCAACAGTATTTGAACTAATTACAATGTAGGGAGGCCCCTAAAGTCCAACAAAAAGAAACTATATGAAATTACAGGCAGCAGGAGCATCATAGTCGGCAATGCAGTAGGTTCGAGATGCCCAGGACACTAAAATTTATCCTGCTGCTGAAACGATCATGTACACCAATCCAAAATGCAAGACCGACTAACCTCCTGCCTCCAGTTACTCTCAACAACAGATCAACTGGCCATGCATCATGCGTCATCGCAAGCTCTTCCATGTCTATCCATGAATCACTGTTTGTATCCTCTTCACAGATAAATATCGAACGGGGACCCTATGGTTCTTCAGTCTTCAGTTCTTTGTGTATTTACAGAGTCTACCTCTTTGCATATATACATACATGCTCAGATGGGCATGTCCACCGAATGATAATGTGGGAAGTCATTTGTTGTGTGTGCTAACTGATGGACGGCAGAGTGGGTTGACTGAAGCCAAGGCCAGACACCCCATCCAAAGAACCAGGCACTACATGTTTCACTTGCCCATATCGCCTGATATGACGAAGGAGCCTTGCCAGGAAGGTGCTGTGACAGATAGTAGAGGTGTCACATACCACGGTGACATGCCGGCATGCCCTTGTAATAGCCACATTCATGCGCCTGCTGTCACCAAGGAAACCTACCGCTCCCAGTGGGTTTGATCGAACCTAGAAATAAAAACAGAAAATACACATCAATGAGGGAGTATTTTGAAGATTTGGTGAGTTGAAATGTAAGACGGAATGATTGTTATCCCGTTGGGCATTGCCCCCGTAAATGCCATTTGCTTCAGCATTGCAATAGCTCAGCGTATAAATCAGAAAAGTGGCAGGTGTAGAACAGAGGATAGGACGCTTACCATCGATATGACAACTGCATCAGCTTCCCTCCCTTGAAAGCTATCTATGGTTGAAACCTCAACCCCAGAAAGCCCTGGATATTCTTCTAGCCTCTCTCTTAACAACTGCACTTGAGCAATGTAGGGTGATTGAACGGCTATCGCTGTTGGAGATACTCCTGCGATCATGATTTTGATCTGCTTGTAAGTTCAATATTTTGAGCACGGAAAATATGTACAAGTTTGATCCCTTTTTTTTAGAACCTTGAGTGTGAAATGCTATCTGATTACCCTGATGTGCGTGTAACTAACAAAACTGAAAAAGGATTGGAGCAGAAGGAATATACAAAAAGAGCCTTAAATTGGTAAAACAATGTCCAAGGCAATATCTAATTAAAGTAGAAATATGTACATACCACCAGTCTAAAAAAAAATGTACATACCACAATGTACAAGGTTGAGAACATGTTGTGTCACAATATCTGCCTCTCCATCATTATAAAATGAGCCTGTACCAGAAAGGTCTATTTGTTCCCCACAACCAGTGTCCAGGGCCCCATATGGCATTCGAGTATCAAGTAAAAGCAGTGGGCACCGTGTTATCCAGGTAGCCTGAAATCAAAAGGACAAAGGTAAAATAGATCAGTTTTTTTAGAGAAGAAAATAGATCCAATTTACAATGTAATACCAATATAAAATCAACTCATATAGATGCATTGATGAAAAAGTTCCAGGACATGGAGTGCACATATTTCAAATGAATAGCACAACAATTAAAAGCAAAACTTGTGGGTTGATCCTAGATAATTCAATATCCAACTGTCTCTTTCACAGATAATTCTCCAAGTAATTATTGTCCCCAACATCCGGTTTCAACATACAAGAATTAATTCTACCTCATATTGACTGTTAGTTTTGGAAACTAGCTGACTGGATCAGCAATATCTTTGGATGTATGTGAGGGTGAACTTTACGCTATCACAAACTGTTTGTACCCGTAGATCTCGTCATTACTCCATATAGTTGCATCATACAATAGTCCACATAGTATGCATACTATATAGGATGGACAGATATGTCCAAATTGTCTTCGAAATTTATCATAAGACTGGATTCAGAAAAGACCAGTCTTTATGAAGGTCGAACACTAATGAGCTTGCAAAGTGGTAAAGAGTTAAAAGACCAAATGGCATGTGATTCAGATCCCCTGGAAGAACAAAAGCAAATTCATCTAATGGGGTCCAATCACAACTTATTTATATGCAACCCTTCAATGGAATCCAGTAAGTTTAAATAAAAGGATTGCCCACATTGATATGGAATTCAATCTTGAGCACCAAAACAGAAACTAATTACATGAACAAGCAATCCTGACACCTGAACTAAAAGCATGTATGTACCTTCACAACTGGAGAGTCAGCAAGAGTTTGTGAAGCAACAGAATGAGAAGATTTGAGCAGTCCATGATACATCTCTTTAGATGCCCAACTAGCTATTGAGTCATTCATTCTGTGCTGCACTGTCAACCTTGTTGTCAGTAATCCATTGTGCAATGACGAAGCTCTTTCCAACAAAGATTTACCAAGCCCTCCATCTAAGGCCTTTCTTGACAAAATTACTGGTGCAAGCTGGCAATGATCACCAGCGAGAATGCAACGCTTTCCCTGCAATATGGGAATCCAGCAGGAGGGTTCTATTGCTTGCCCTGCTTCATCTATGATTACCAAGTCAAAACAACATGTTCTCCTGATAAGTGGATCGGCTGCCCCTGTGTTAGTAGAAAGCACAACCTGTGCCTCAGAGAGTGCTTCCCTAATCATTTCCTTTTCTTTCTTTTCCAGATCCCTTCCAAGTTGCTTCAGCAGTTGACGAATGCCGGCAGCTAAAGAATCATCCTCTATGCAGTAGCTCAGGTCCTTTCTTAAATCACTTCTCTTTCTCTCAAGCTCCTTCCTGAACTGCTCAAGCCTTCCGTTCACAATCTCCGCCAAGGACTTTGAAGCAACAGATGGTGATATCCGAGCAGGGTTTCCAACTCGCACAATGTTCAAGCCAGTGTTTGACAACCTTTCAACCATGTTATCTACTGCCGCATTGCTAGGAGCTGTCACAAGGACGTTCTCACCCTGTTGGACAGCACGTACAATGAGCTCTGTGAGCAAGACTGTCTTGCCCGTGCCAGGAGGACCCTGGATAATTAGAACAGGCCTCTTCTTGTTCAAGCCTAATGAGAGAGCCTTTAACTGGGAGGCATCTAGTGCATACCTCTCTGATATCCTCGGATCAGGTGCACTTGATTCACCCCAGTCAGTC
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| CDS seq | ATGGTTGAAAGGTTGTCAAACACTGGCTTGAACATTGTGCGAGTTGGAAACCCTGCTCGGATATCACCATCTGTTGCTTCAAAGTCCTTGGCGGAGATTGTGAACGGAAGGCTTGAGCAGTTCAGGAAGGAGCTTGAGAGAAAGAGAAGTGATTTAAGAAAGGACCTGAGCTACTGCATAGAGGATGATTCTTTAGCTGCCGGCATTCGTCAACTGCTGAAGCAACTTGGAAGGGATCTGGAAAAGAAAGAAAAGGAAATGATTAGGGAAGCACTCTCTGAGGCACAGGTTGTGCTTTCTACTAACACAGGGGCAGCCGATCCACTTATCAGGAGAACATGTTGTTTTGACTTGGTAATCATAGATGAAGCAGGGCAAGCAATAGAACCCTCCTGCTGGATTCCCATATTGCAGGGAAAGCGTTGCATTCTCGCTGGTGATCATTGCCAGCTTGCACCAGTAATTTTGTCAAGAAAGGCCTTAGATGGAGGGCTTGGTAAATCTTTGTTGGAAAGAGCTTCGTCATTGCACAATGGATTACTGACAACAAGGTTGACAGTGCAGCACAGAATGAATGACTCAATAGCTAGTTGGGCATCTAAAGAGATGTATCATGGACTGCTCAAATCTTCTCATTCTGTTGCTTCACAAACTCTTGCTGACTCTCCAGTTGTGAAGGCTACCTGGATAACACGGTGCCCACTGCTTTTACTTGATACTCGAATGCCATATGGGGCCCTGGACACTGGTTGTGGGGAACAAATAGACCTTTCTGGTACAGGCTCATTTTATAATGATGGAGAGGCAGATATTGTGACACAACATGTTCTCAACCTTGTACATTGTGGAGTATCTCCAACAGCGATAGCCGTTCAATCACCCTACATTGCTCAAGTGCAGTTGTTAAGAGAGAGGCTAGAAGAATATCCAGGGCTTTCTGGGGTTGAGGTTTCAACCATAGATAGCTTTCAAGGGAGGGAAGCTGATGCAGTTGTCATATCGATGGTTCGATCAAACCCACTGGGAGCGGTAGGTTTCCTTGGTGACAGCAGGCGCATGAATGTGGCTATTACAAGGGCATGCCGGCATGTCACCGTGGTATGTGACACCTCTACTATCTGTCACAGCACCTTCCTGGCAAGGCTCCTTCGTCATATCAGGCGATATGGGCAAGTGAAACATGTAGTGCCTGGTTCTTTGGATGGGGTGTCTGGCCTTGGCTTCAGTCAACCCACTCTGCCGTCCATCAGTTAG
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| Protein seq | MVERLSNTGLNIVRVGNPARISPSVASKSLAEIVNGRLEQFRKELERKRSDLRKDLSYCIEDDSLAAGIRQLLKQLGRDLEKKEKEMIREALSEAQVVLSTNTGAADPLIRRTCCFDLVIIDEAGQAIEPSCWIPILQGKRCILAGDHCQLAPVILSRKALDGGLGKSLLERASSLHNGLLTTRLTVQHRMNDSIASWASKEMYHGLLKSSHSVASQTLADSPVVKATWITRCPLLLLDTRMPYGALDTGCGEQIDLSGTGSFYNDGEADIVTQHVLNLVHCGVSPTAIAVQSPYIAQVQLLRERLEEYPGLSGVEVSTIDSFQGREADAVVISMVRSNPLGAVGFLGDSRRMNVAITRACRHVTVVCDTSTICHSTFLARLLRHIRRYGQVKHVVPGSLDGVSGLGFSQPTLPSIS |
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| Function | DNA-binding protein SMUBP-2 [UniProtKB/Swiss-Prot:Q9EQN5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g47560 | LOC_Os02g47560.1 | Chr02 | 29059281 | 29062623 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTTGAAAGGTTGTCAAACACTGGCTTGAACATTGTGCGAGTTGGAAACCCTGCTCGGATATCACCATCTGTTGCTTCAAAGTCCTTGGCGGAGATTGTGAACGGAAGGCTTGAGCAGTTCAGGAAGGAGCTTGAGAGAAAGAGAAGTGATTTAAGAAAGGACCTGAGCTACTGCATAGAGGATGATTCTTTAGCTGCCGGCATTCGTCAACTGCTGAAGCAACTTGGAAGGGATCTGGAAAAGAAAGAAAAGGAAATGATTAGGGAAGCACTCTCTGAGGCACAGGTTGTGCTTTCTACTAACACAGGGGCAGCCGATCCACTTATCAGGAGAACATGTTGTTTTGACTTGGTAATCATAGATGAAGCAGGGCAAGCAATAGAACCCTCCTGCTGGATTCCCATATTGCAGGGAAAGCGTTGCATTCTCGCTGGTGATCATTGCCAGCTTGCACCAGTAATTTTGTCAAGAAAGGCCTTAGATGGAGGGCTTGGTAAATCTTTGTTGGAAAGAGCTTCGTCATTGCACAATGGATTACTGACAACAAGGTTGACAGTGCAGCACAGAATGAATGACTCAATAGCTAGTTGGGCATCTAAAGAGATGTATCATGGACTGCTCAAATCTTCTCATTCTGTTGCTTCACAAACTCTTGCTGACTCTCCAGTTGTGAAGGCTACCTGGATAACACGGTGCCCACTGCTTTTACTTGATACTCGAATGCCATATGGGGCCCTGGACACTGGTTGTGGGGAACAAATAGACCTTTCTGGTACAGGCTCATTTTATAATGATGGAGAGGCAGATATTGTGACACAACATGTTCTCAACCTTGTACATTGTGGAGTATCTCCAACAGCGATAGCCGTTCAATCACCCTACATTGCTCAAGTGCAGTTGTTAAGAGAGAGGCTAGAAGAATATCCAGGGCTTTCTGGGGTTGAGGTTTCAACCATAGATAGCTTTCAAGGGAGGGAAGCTGATGCAGTTGTCATATCGATGGTTCGATCAAACCCACTGGGAGCGGTAGGTTTCCTTGGTGACAGCAGGCGCATGAATGTGGCTATTACAAGGGCATGCCGGCATGTCACCGTGGTATGTGACACCTCTACTATCTGTCACAGCACCTTCCTGGCAAGGCTCCTTCGTCATATCAGGCGATATGGGCAAGTGAAACATGTAGTGCCTGGTTCTTTGGATGGGGTGTCTGGCCTTGGCTTCAGTCAACCCACTCTGCCGTCCATCAGTTAG
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| Protein seq | MVERLSNTGLNIVRVGNPARISPSVASKSLAEIVNGRLEQFRKELERKRSDLRKDLSYCIEDDSLAAGIRQLLKQLGRDLEKKEKEMIREALSEAQVVLSTNTGAADPLIRRTCCFDLVIIDEAGQAIEPSCWIPILQGKRCILAGDHCQLAPVILSRKALDGGLGKSLLERASSLHNGLLTTRLTVQHRMNDSIASWASKEMYHGLLKSSHSVASQTLADSPVVKATWITRCPLLLLDTRMPYGALDTGCGEQIDLSGTGSFYNDGEADIVTQHVLNLVHCGVSPTAIAVQSPYIAQVQLLRERLEEYPGLSGVEVSTIDSFQGREADAVVISMVRSNPLGAVGFLGDSRRMNVAITRACRHVTVVCDTSTICHSTFLARLLRHIRRYGQVKHVVPGSLDGVSGLGFSQPTLPSIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.426431 | 7.737512 | 1.033489 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0704300 | RBH | 9.925458 | 10.494776 | 5.540911 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g04440 | RBH | 11.030986 | 9.014250 | 1.041970 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0704300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030500 | RBH | 0.472492 | 0.647935 | 0.939566 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030580 | RBH | 0.803399 | 0.281963 | 1.636175 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030470 | RBH | 0.330445 | 1.182109 | 5.166213 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030030 | RBH | 0.046764 | 0.130789 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030210 | RBH | 23.026854 | 0.0 | 3.109545 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0473600 | RBH | 3.904423 | 2.819066 | 10.630433 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029990 | RBH | 0.086637 | 0.047980 | 0.832226 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0501200 | RBH | 10.791404 | 3.8634225 | 2.2973365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030300 | RBH | 1.492522 | 0.030129 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030060 | RBH | 2.024819 | 1.804390 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030420 | RBH | 17.551092 | 4.637710 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030240 | RBH | 0.283853 | 0.000000 | 1.854033 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029880 | RBH | 0.232411 | 1.054203 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030510 | RBH | 0.344787 | 0.760196 | 1.814686 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030270 | RBH | 1.068304 | 6.667462 | 5.307219 |
