Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g45900 | OGI:02078820 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:27970104-27972033 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATCTCTCGGGTGGACGTCCACCCGTTTCTTACATGTCACCTAAATGATTATGAAAAAAATCAAAAAAAAATTACAAGGTAGGTTAATATATAATATATCACTTCACAAACATGTAAGTTCAAATTTGACTTTTACGAGTCTATTTCGCCTTCAGTAGTCTATTTCGCCTTGGATTTCTGGAAAGAGTAACGGCGGTTAGTTACTGTAAGGAACGGTTACTGCTCAAGCCTCAAGGCCTTAGCCAAACACAGAATTCAGAAAGGCGTTAAGCTAGCTTTCTTTCGCATTAACTAATTAATTTCACTGCCCAAATATGCTGCATGATATGAAAGAGCACGGAAGAGGACACGATCAAATGGTAAAGAAAATAAATGTTTAAAATGTCAGGTTTAAACGTACCCCAAATCGCGAGCCGCTAAGACGCAGGGAGTCCATCTCGAGCAGGTCGTCGACTTCGTCCAGCTCGATGACGGCCCTAATTATCGCATTGTTGAGTTCTTTATCCTCGCTCGCGTTAAAGAGGCAGCCTCTGTTCTTTGCATCAGCCACTATCTCACGCCAAATGGTCTTTGCTACTCGCTAGAGTATTTGCATTGCCAAGAATCCAAAGACAGTGCCTGCAAAAACAAAAACAACAATGGATCAAACAACAAAATCGGAGTGAAATCAACTCTCTGTGCGACTGACGTAATTGGCCGGGAGGATCGAGGCAACCTACTTGGCCCGGGTCAGCGCGACGTTGGTGCGGTTGACGTTGGAGAGGAACCCGACCGATCCGGTGGTGTTGCTGCGCACGGCGGAGAAGATGATGATGTCCTCCTCGGCGCCCTGGAACCCGTCCACGGATCGCACCTTCACGGTGAAGCCCCCGTGCGTCTCGTACGCCTTCCCGAGCCTCTCCTGGATGGCGCGGACCTGCCCCTTGTACGGCGACACCACGCCCACGCACAGCTTCCTCCCGGTGTCAACCGACTCTGCACAAACCAAGCTATCTGAGCTCAGCGATGCCATGCCAGAATGCAAGGGCATGATGCAATGTGTACCTTTGAACAATCTCTGAACGATCCGGGTCACGGCGGCGACCTCGATGGGGTTCATGAGGCTCTTGTCGTGCTTGCCCTTGCTCTCCTTGCCGGCATCGACGTTGATGAAGGAGTAGGAGCCGTACATTGGCCCGGCAAGGGGCTTCCTCTCGTAGTCCCTGTGTAATACGTTCTCGCCGTCAGATATCTTGTTCTCGTAGAAGCTTGAGACCGGGAACTTGCTGATCCCTGGGTGCATCCTGTACTGCACATCCAGGAGGTGCTTCGGGTGTCCCAGCGAACTCAGCCTCTCAAACAGGCTCCTTCCAAACTCAGCATCTTCACAAACCTGTGAAGAAACAAACAGACAATTGTTACATAGCATAGTAATAGAGATTGTGAATGTTCTACTAATAGAGATGGTGAGAGCTTACCCTGCTTTTGACAAGTGCCGGCAGCTGAAATTCATAGCCGATGAGAACGGCGTGACGAACGCCAGGGAGCTGGAGAGGTATCAGTGACTCGCACTCCTTCAGCTGTGCTGCCTCGTCGACGACAAGGAGATCAAACGGGCTTGCTTCTGGCAGGTAGTGCAGACGGGATGAGCTAGAAGCTGTGCAGAGTATGCTTTTGGCGTTCCGGACTAGGAAATCTTCTATCGAACGCTTGTCGAAAACGTTCGGAAGTTCAAAGTGATCAGATAGGTGTTTTAGCTTCTGAAGACACTGAGCTCTAGCATCCTTCAGCTCTGTACTCACACTATCTTGCACATATGTCACGAAGTTCTGAAACAGTGAGCTGATGCTGCCATCGGGGCTGAGTTTGAACAGGGTTTTCAGGCTCTGTTCTGATTTGGGCTCCACAAGTTTACCAAAAAATTTTAGCATGTGCAGGGCCTGGGTCAT
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| CDS seq | ATGACCCAGGCCCTGCACATGCTAAAATTTTTTGGTAAACTTGTGGAGCCCAAATCAGAACAGAGCCTGAAAACCCTGTTCAAACTCAGCCCCGATGGCAGCATCAGCTCACTGTTTCAGAACTTCGTGACATATGTGCAAGATAGTGTGAGTACAGAGCTGAAGGATGCTAGAGCTCAGTGTCTTCAGAAGCTAAAACACCTATCTGATCACTTTGAACTTCCGAACGTTTTCGACAAGCGTTCGATAGAAGATTTCCTAGTCCGGAACGCCAAAAGCATACTCTGCACAGCTTCTAGCTCATCCCGTCTGCACTACCTGCCAGAAGCAAGCCCGTTTGATCTCCTTGTCGTCGACGAGGCAGCACAGCTGAAGGAGTGCGAGTCACTGATACCTCTCCAGCTCCCTGGCGTTCGTCACGCCGTTCTCATCGGCTATGAATTTCAGCTGCCGGCACTTGTCAAAAGCAGGGTTTGTGAAGATGCTGAGTTTGGAAGGAGCCTGTTTGAGAGGCTGAGTTCGCTGGGACACCCGAAGCACCTCCTGGATGTGCAGTACAGGATGCACCCAGGGATCAGCAAGTTCCCGGTCTCAAGCTTCTACGAGAACAAGATATCTGACGGCGAGAACGTATTACACAGGGACTACGAGAGGAAGCCCCTTGCCGGGCCAATGTACGGCTCCTACTCCTTCATCAACGTCGATGCCGGCAAGGAGAGCAAGGGCAAGCACGACAAGAGCCTCATGAACCCCATCGAGGTCGCCGCCGTGACCCGGATCGTTCAGAGATTGTTCAAAGGTACACATTGCATCATGCCCTTGCATTCTGGCATGGCATCGCTGAGCTCAGATAGCTTGGTTTGTGCAGAGTCGGTTGACACCGGGAGGAAGCTGTGCGTGGGCGTGGTGTCGCCGTACAAGGGGCAGGTCCGCGCCATCCAGGAGAGGCTCGGGAAGGCGTACGAGACGCACGGGGGCTTCACCGTGAAGGTGCGATCCGTGGACGGGTTCCAGGGCGCCGAGGAGGACATCATCATCTTCTCCGCCGTGCGCAGCAACACCACCGGATCGGTCGGGTTCCTCTCCAACGTCAACCGCACCAACGTCGCGCTGACCCGGGCCAAGCACTGTCTTTGGATTCTTGGCAATGCAAATACTCTAGCGAGTAGCAAAGACCATTTGGCGGCCGTCATCGAGCTGGACGAAGTCGACGACCTGCTCGAGATGGACTCCCTGCGTCTTAGCGGCTCGCGATTTGGGGTGACATGTAAGAAACGGGTGGACGTCCACCCGAGAGATTAG
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| Protein seq | MTQALHMLKFFGKLVEPKSEQSLKTLFKLSPDGSISSLFQNFVTYVQDSVSTELKDARAQCLQKLKHLSDHFELPNVFDKRSIEDFLVRNAKSILCTASSSSRLHYLPEASPFDLLVVDEAAQLKECESLIPLQLPGVRHAVLIGYEFQLPALVKSRVCEDAEFGRSLFERLSSLGHPKHLLDVQYRMHPGISKFPVSSFYENKISDGENVLHRDYERKPLAGPMYGSYSFINVDAGKESKGKHDKSLMNPIEVAAVTRIVQRLFKGTHCIMPLHSGMASLSSDSLVCAESVDTGRKLCVGVVSPYKGQVRAIQERLGKAYETHGGFTVKVRSVDGFQGAEEDIIIFSAVRSNTTGSVGFLSNVNRTNVALTRAKHCLWILGNANTLASSKDHLAAVIELDEVDDLLEMDSLRLSGSRFGVTCKKRVDVHPRD |
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| Function | Probable helicase MAGATAMA 3 [UniProtKB/Swiss-Prot:B6SFA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g45900 | LOC_Os02g45900.1 | Chr02 | 27970104 | 27972033 | - | MSU_osa1r7 | ||
| CDS seq | ATGACCCAGGCCCTGCACATGCTAAAATTTTTTGGTAAACTTGTGGAGCCCAAATCAGAACAGAGCCTGAAAACCCTGTTCAAACTCAGCCCCGATGGCAGCATCAGCTCACTGTTTCAGAACTTCGTGACATATGTGCAAGATAGTGTGAGTACAGAGCTGAAGGATGCTAGAGCTCAGTGTCTTCAGAAGCTAAAACACCTATCTGATCACTTTGAACTTCCGAACGTTTTCGACAAGCGTTCGATAGAAGATTTCCTAGTCCGGAACGCCAAAAGCATACTCTGCACAGCTTCTAGCTCATCCCGTCTGCACTACCTGCCAGAAGCAAGCCCGTTTGATCTCCTTGTCGTCGACGAGGCAGCACAGCTGAAGGAGTGCGAGTCACTGATACCTCTCCAGCTCCCTGGCGTTCGTCACGCCGTTCTCATCGGCTATGAATTTCAGCTGCCGGCACTTGTCAAAAGCAGGGTTTGTGAAGATGCTGAGTTTGGAAGGAGCCTGTTTGAGAGGCTGAGTTCGCTGGGACACCCGAAGCACCTCCTGGATGTGCAGTACAGGATGCACCCAGGGATCAGCAAGTTCCCGGTCTCAAGCTTCTACGAGAACAAGATATCTGACGGCGAGAACGTATTACACAGGGACTACGAGAGGAAGCCCCTTGCCGGGCCAATGTACGGCTCCTACTCCTTCATCAACGTCGATGCCGGCAAGGAGAGCAAGGGCAAGCACGACAAGAGCCTCATGAACCCCATCGAGGTCGCCGCCGTGACCCGGATCGTTCAGAGATTGTTCAAAGGTACACATTGCATCATGCCCTTGCATTCTGGCATGGCATCGCTGAGCTCAGATAGCTTGGTTTGTGCAGAGTCGGTTGACACCGGGAGGAAGCTGTGCGTGGGCGTGGTGTCGCCGTACAAGGGGCAGGTCCGCGCCATCCAGGAGAGGCTCGGGAAGGCGTACGAGACGCACGGGGGCTTCACCGTGAAGGTGCGATCCGTGGACGGGTTCCAGGGCGCCGAGGAGGACATCATCATCTTCTCCGCCGTGCGCAGCAACACCACCGGATCGGTCGGGTTCCTCTCCAACGTCAACCGCACCAACGTCGCGCTGACCCGGGCCAAGCACTGTCTTTGGATTCTTGGCAATGCAAATACTCTAGCGAGTAGCAAAGACCATTTGGCGGCCGTCATCGAGCTGGACGAAGTCGACGACCTGCTCGAGATGGACTCCCTGCGTCTTAGCGGCTCGCGATTTGGGGTGACATGTAAGAAACGGGTGGACGTCCACCCGAGAGATTAG
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| Protein seq | MTQALHMLKFFGKLVEPKSEQSLKTLFKLSPDGSISSLFQNFVTYVQDSVSTELKDARAQCLQKLKHLSDHFELPNVFDKRSIEDFLVRNAKSILCTASSSSRLHYLPEASPFDLLVVDEAAQLKECESLIPLQLPGVRHAVLIGYEFQLPALVKSRVCEDAEFGRSLFERLSSLGHPKHLLDVQYRMHPGISKFPVSSFYENKISDGENVLHRDYERKPLAGPMYGSYSFINVDAGKESKGKHDKSLMNPIEVAAVTRIVQRLFKGTHCIMPLHSGMASLSSDSLVCAESVDTGRKLCVGVVSPYKGQVRAIQERLGKAYETHGGFTVKVRSVDGFQGAEEDIIIFSAVRSNTTGSVGFLSNVNRTNVALTRAKHCLWILGNANTLASSKDHLAAVIELDEVDDLLEMDSLRLSGSRFGVTCKKRVDVHPRD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0684150 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49270 | RBH | 0.0 | 0.0 | 0.062902 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0684150 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029250 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029310 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029180 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028950 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0473600 | SBH | 3.904423 | 2.819066 | 10.630433 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028760 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0482300 | SBH | 0 | 0.0033565 | 0.0047195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029220 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028990 | RBH | 0.0 | 0.0 | 0.0 |
