Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os02g45020 OGI:02077180 | 1/16 Nipponbare | IRGSP 1.0 | MSU Chr02:27284241-27287279
Gene Symbol -
DNA seq

TTATTCGCCATTAGCAACAACCTCAGGGTCGAAATCTTTCACCTCTCTTAGAAGTGTTGACATGTTGTGGCACACGTGGAAACCACATTGGTCTCCGATCTGTTGTGCGCATGCAAACTTGGTGTCATGATAAAGTTCATTCTTGCCCTCCTTGTGCCTACCACCCTTTTCCACATATGGGCCCCAAGCCATATTTAAGGCCTTGGTGATTTCACTGAAATCATAATCTTTGGACTTATTGGAGTTAAGGTAGGTAACCCTACTCCACTTAGGTACAATGACTAGGAGAATCCAATGTCGCCTGCGCAGTGGTTATGTAGCGTTAGTACTAAGAACCTTAACTTCAAAAACAATATACACGAAGGGTATTGTCCTCTTACTCTTGGTTGTGTGCGCACATGATGTACTCCTTGTCTTGATGGGCCCATAAACACCGGTTGACATAGTCAACCACCTCAGTGAAGCTCTGTCGTAAATTAACCTCATTCACCATGGATGGATCAAGGAACCCAACCTGATTACCATGGCGACGACTCTCGATCCAACACAACCTTAAAATATTTACGTATTAGAACTAATTTAATTAGGAGATATAGTCCAGTCATATCACAAGTATAGAAGGTATGCACTTACAAGGAGTAGCATTTTAGAAGACCAGTGTCCAACTTCCGGATCCTGAAAAGGTCGAAGAGGTCATCAAAGCCTATAGTTATATAGGCAGGCGACGATAGGAACGGCTGGTGGTCGTGATGTCCAACTATGGATGACTCCCTCATTTTCCGCTTGGCATTGCTTAGCTCCATGTATTGCTTATGTAGCTCTCGGCAAGCAATACCCATCACAGCTAACACATTGTCCTCCACCAATGGCATGCCTAGCTCAAATTGGGCTGGCGCCCTCACGACCTTCCCCGATTTGCTCACCGGCATCGACGTCGCAGCCTTGCCCCTTTTTGGCTCCGGCGCCAACTCCCCGACCTTCCCCTTGCCGCGTTCACGCTTCTGGCCCTTGACAAGTGGTGGGGAGCTATCGGCCTTTCTTGTGGTCTTTATTGGAGCCAAGCTTTGAGCTATATCTGCCAAGTCCATATCAGCTCCACCAGGAGAATGAGGTACTGACAATGCCGGTCCACGGGGAGCCTCAATTGATAGCTTACACTTGGGAGGTGTAAGCTCCGTCGGTCGACTTGGACGAGGAGTCATCTTCACAACTATGTCTTCTTTGGGCCATTGTATGAACGTCTTGCGCGCATCGCCCAAAGTCATGATTTCATCATTTGGGGGCACGGGCAGCGGATAGCCTGACCAGGTGTCCTTTACTGTATCGATGGACACCTTGGCATACCCAGCTAGCAGGTCTGCGCCGTGGACCTTGTCTGTAACCGAGGGCTTGAAAGCCATGCCCTCAGCGACTTCAGGAGCGAAAGTTGGGTGGACTCTCGCTAGTAGGACACACTGTGCTGCGCCCTGCATAAGGTGAAAGTTTGAATTTAATATTGGAATGTGTAAATGTCTTTTATTAGATATGGATCGGATAACAACAATTACCTCGATGTGGTCCACTGCAGCTAGTGGTGCGATCGGGAGACCAGGGGCCGGCACCTCTGTGGATGCACAACTACTCCTATGCTGTGACGGACTCGCGTCGTGTTGTACACGAGGAGTTGGTTGCACAGCAGGTGTTGTGACTCGGGGTATATTCATGTCGGCGAGCACCTTGTTAACCCTTTCTTCCACCCTTGCATTCATGCTAGCTTCTAGTTCTTGAATGACCTCAACCTTAAGTTCAGCCTTCAAACGAGCGTCCCTCTCTTCCTTGGAGACTTTCCGTTTCCTGTATTGGGAGCTGTACTGAGGGAGTCCATGCTTCCAGGGCACATCGCTACCAATTCCCCGAGTTCGGCCAGGATGTTCTTTGGTTCCGAGCGCCTTTGTGAGGATGTCATCTTCGCGCCTCTTCGGCGCGGACTCAACCTCGCTTTGTGAAGCTTGTTCAGCAACCAAGCCCAACTAGAAAAGAAGATAGTCGTTTATACGAACTTGTACTTTATACGAACGGAAATTAGTTAGGTTAAGTAGTGAACTCACCAGTTCCTGATAGACGACGGCATCACTTTTGTTCTCAAATGTGACAGAGCCGTCCGGGTTGACCTTACCCCTTGCCCGCGCCCAGTTGCGAGCTCTTTGTTCAGGGATGTCTGAAAACGGGGCAGGGACATTCGCTGCTGCAGCGGCTGCATCTTCTTGGGCCCATATTGCCTCCTTGCCGATGTACCCTGCGGTGCCCAGCCGATGCGGGTGCTCATTCCGCTGTTGCAGTACGCGATGTGCCTCGCTGGATTCCCTAAACTCTTGGGTGGTCTTGAGAGAGCAGAATTCCTCCCACACCGCTTCGGTTATTTGATGGTATTCATCGAACGGCGTATGATTGCCGGGCGGGTTGACATACTCGGTGAAGAGCTTCGACTTCCAATTCTTCCAAGCTTTGCCCATCTTTTGGAATGCCTTCCGCTTGAGCCTATCCTTTGCTTCGGCTGGAAATGTGAACCATTTCTCCATTGCCGTCCAAGCTCGCTCTTTCTCGGCTTCTGTGACCTTCCCGATATCTTTATAGAGGATCCCGAAGTTCTCACGTGCCACTAGCCCGCAGCAGTTAGACCATCTTCCAATGACAGTCCTGGGCGCCGTGGGCCTACCACTAGCGTCAACCTCTCTTATAACTTGCACTGTGGTCGGCCATATATTTTGTGACCGCGGATTTCTACTAGACCTACTTGCACTTGTCTCGCCCGACATCGACGTATGTTGTTCCTGCGGCAATTCTGCAGCACAAACAGAAGGCAATATTTGCTAAGGGGTGCTAGCTAAAATTTATGTGGTCATGTGGTGAAAATTTATGCTATAAATTACCATGAATTTCGGGTTGTTGGACCGCCGTTGTCCCGGGATGACCTTCGGCAATTGCCTCTGTGGCTGGGTTTGCTTCTTCCTGGATCCTCGCAGGTGTTGGGGAGGGCGGGTTTGCGCCGGGCGTTGACAT

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CDS seq

ATGTCAACGCCCGGCGCAAACCCGCCCTCCCCAACACCTGCGAGGATCCAGGAAGAAGCAAACCCAGCCACAGAGGCAATTGCCGAAGGTCATCCCGGGACAACGGCGGTCCAACAACCCGAAATTCATGAATTGCCGCAGGAACAACATACGTCGATGTCGGGCGAGACAAGTGCAAGTAGGTCTAGTAGAAATCCGCGGTCACAAAATATATGGCCGACCACAGTGCAAGTTATAAGAGAGGTTGACGCTAGTGGTAGGCCCACGGCGCCCAGGACTGTCATTGGAAGATGGTCTAACTGCTGCGGGCTAGTGGCACGTGAGAACTTCGGGATCCTCTATAAAGATATCGGGAAGGTCACAGAAGCCGAGAAAGAGCGAGCTTGGACGGCAATGGAGAAATGGTTCACATTTCCAGCCGAAGCAAAGGATAGGCTCAAGCGGAAGGCATTCCAAAAGATGGGCAAAGCTTGGAAGAATTGGAAGTCGAAGCTCTTCACCGAGTATGTCAACCCGCCCGGCAATCATACGCCGTTCGATGAATACCATCAAATAACCGAAGCGGTGTGGGAGGAATTCTGCTCTCTCAAGACCACCCAAGAGTTTAGGGAATCCAGCGAGGCACATCGCGTACTGCAACAGCGGAATGAGCACCCGCATCGGCTGGGCACCGCAGGGTACATCGGCAAGGAGGCAATATGGGCCCAAGAAGATGCAGCCGCTGCAGCAGCGAATGTCCCTGCCCCGTTTTCAGACATCCCTGAACAAAGAGCTCGCAACTGGGCGCGGGCAAGGGGTAAGGTCAACCCGGACGGCTCTGTCACATTTGAGAACAAAAGTGATGCCGTCGTCTATCAGGAACTGTTGGGCTTGGTTGCTGAACAAGCTTCACAAAGCGAGGTTGAGTCCGCGCCGAAGAGGCGCGAAGATGACATCCTCACAAAGGCGCTCGGAACCAAAGAACATCCTGGCCGAACTCGGGGAATTGGTAGCGATGTGCCCTGGAAGCATGGACTCCCTCAGTACAGCTCCCAATACAGGAAACGGAAAGTCTCCAAGGAAGAGAGGGACGCTCGTTTGAAGGCTGAACTTAAGGTTGAGGTCATTCAAGAACTAGAAGCTAGCATGAATGCAAGGGTGGAAGAAAGGGTTAACAAGGTGCTCGCCGACATGAATATACCCCGAGTCACAACACCTGCTGTGCAACCAACTCCTCGTGTACAACACGACGCGAGTCCGTCACAGCATAGGAGTAGTTGTGCATCCACAGAGGTGCCGGCCCCTGGTCTCCCGATCGCACCACTAGCTGCAGTGGACCACATCGAGGGCGCAGCACAGTGTGTCCTACTAGCGAGAGTCCACCCAACTTTCGCTCCTGAAGTCGCTGAGGGCATGGCTTTCAAGCCCTCGGTTACAGACAAGGTCCACGGCGCAGACCTGCTAGCTGGGTATGCCAAGGTGTCCATCGATACAGTAAAGGACACCTGGTCAGGCTATCCGCTGCCCGTGCCCCCAAATGATGAAATCATGACTTTGGGCGATGCGCGCAAGACGTTCATACAATGGCCCAAAGAAGACATAGTTGTGAAGATGACTCCTCGTCCAAGTCGACCGACGGAGCTTACACCTCCCAAGTGTAAGCTATCAATTGAGGCTCCCCGTGGACCGGCATTGTCAGTACCTCATTCTCCTGGTGGAGCTGATATGGACTTGGCAGATATAGCTCAAAGCTTGGCTCCAATAAAGACCACAAGAAAGGCCGATAGCTCCCCACCACTTGTCAAGGGCCAGAAGCGTGAACGCGGCAAGGGGAAGGTCGGGGAGTTGGCGCCGGAGCCAAAAAGGGGCAAGGCTGCGACGTCGATGCCGGTGAGCAAATCGGGGAAGGTCGTGAGGGCGCCAGCCCAATTTGAGCTAGGCATGCCATTGGTGGAGGACAATGTGTTAGCTGTGATGGGTATTGCTTGCCGAGAGCTACATAAGCAATACATGGAGCTAAGCAATGCCAAGCGGAAAATGAGGGAGTCATCCATAGTTGGACATCACGACCACCAGCCGTTCCTATCGTCGCCTGCCTATATAACTATAGGCTTTGATGACCTCTTCGACCTTTTCAGGATCCGGAAGTTGGACACTGGTCTTCTAAAATGCTACTCCTTGTTGTGTTGGATCGAGAGTCGTCGCCATGGTAATCAGGTTGGGTTCCTTGATCCATCCATGGTGAATGAGGTTAATTTACGACAGAGCTTCACTGAGGTGGTTGACTATGTCAACCGGTGTTTATGGGCCCATCAAGACAAGGAGTACATCATGTGCGCACACAACCAAGAGCGACATTGGATTCTCCTAGTCATTGTACCTAAGTGGAGTAGGGTTACCTACCTTAACTCCAATAAGTCCAAAGATTATGATTTCAGTGAAATCACCAAGGCCTTAAATATGGCTTGGGGCCCATATGTGGAAAAGGGTGGTAGGCACAAGGAGGGCAAGAATGAACTTTATCATGACACCAAGTTTGCATGCGCACAACAGATCGGAGACCAATGTGGTTTCCACGTGTGCCACAACATGTCAACACTTCTAAGAGAGGTGAAAGATTTCGACCCTGAGGTTGTTGCTAATGGCGAATAA

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Protein seq

MSTPGANPPSPTPARIQEEANPATEAIAEGHPGTTAVQQPEIHELPQEQHTSMSGETSASRSSRNPRSQNIWPTTVQVIREVDASGRPTAPRTVIGRWSNCCGLVARENFGILYKDIGKVTEAEKERAWTAMEKWFTFPAEAKDRLKRKAFQKMGKAWKNWKSKLFTEYVNPPGNHTPFDEYHQITEAVWEEFCSLKTTQEFRESSEAHRVLQQRNEHPHRLGTAGYIGKEAIWAQEDAAAAAANVPAPFSDIPEQRARNWARARGKVNPDGSVTFENKSDAVVYQELLGLVAEQASQSEVESAPKRREDDILTKALGTKEHPGRTRGIGSDVPWKHGLPQYSSQYRKRKVSKEERDARLKAELKVEVIQELEASMNARVEERVNKVLADMNIPRVTTPAVQPTPRVQHDASPSQHRSSCASTEVPAPGLPIAPLAAVDHIEGAAQCVLLARVHPTFAPEVAEGMAFKPSVTDKVHGADLLAGYAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPSRPTELTPPKCKLSIEAPRGPALSVPHSPGGADMDLADIAQSLAPIKTTRKADSSPPLVKGQKRERGKGKVGELAPEPKRGKAATSMPVSKSGKVVRAPAQFELGMPLVEDNVLAVMGIACRELHKQYMELSNAKRKMRESSIVGHHDHQPFLSSPAYITIGFDDLFDLFRIRKLDTGLLKCYSLLCWIESRRHGNQVGFLDPSMVNEVNLRQSFTEVVDYVNRCLWAHQDKEYIMCAHNQERHWILLVIVPKWSRVTYLNSNKSKDYDFSEITKALNMAWGPYVEKGGRHKEGKNELYHDTKFACAQQIGDQCGFHVCHNMSTLLREVKDFDPEVVANGE

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os02g45020 LOC_Os02g45020.1 Chr02 27284241 27287279 - MSU_osa1r7
CDS seq

ATGTCAACGCCCGGCGCAAACCCGCCCTCCCCAACACCTGCGAGGATCCAGGAAGAAGCAAACCCAGCCACAGAGGCAATTGCCGAAGGTCATCCCGGGACAACGGCGGTCCAACAACCCGAAATTCATGAATTGCCGCAGGAACAACATACGTCGATGTCGGGCGAGACAAGTGCAAGTAGGTCTAGTAGAAATCCGCGGTCACAAAATATATGGCCGACCACAGTGCAAGTTATAAGAGAGGTTGACGCTAGTGGTAGGCCCACGGCGCCCAGGACTGTCATTGGAAGATGGTCTAACTGCTGCGGGCTAGTGGCACGTGAGAACTTCGGGATCCTCTATAAAGATATCGGGAAGGTCACAGAAGCCGAGAAAGAGCGAGCTTGGACGGCAATGGAGAAATGGTTCACATTTCCAGCCGAAGCAAAGGATAGGCTCAAGCGGAAGGCATTCCAAAAGATGGGCAAAGCTTGGAAGAATTGGAAGTCGAAGCTCTTCACCGAGTATGTCAACCCGCCCGGCAATCATACGCCGTTCGATGAATACCATCAAATAACCGAAGCGGTGTGGGAGGAATTCTGCTCTCTCAAGACCACCCAAGAGTTTAGGGAATCCAGCGAGGCACATCGCGTACTGCAACAGCGGAATGAGCACCCGCATCGGCTGGGCACCGCAGGGTACATCGGCAAGGAGGCAATATGGGCCCAAGAAGATGCAGCCGCTGCAGCAGCGAATGTCCCTGCCCCGTTTTCAGACATCCCTGAACAAAGAGCTCGCAACTGGGCGCGGGCAAGGGGTAAGGTCAACCCGGACGGCTCTGTCACATTTGAGAACAAAAGTGATGCCGTCGTCTATCAGGAACTGTTGGGCTTGGTTGCTGAACAAGCTTCACAAAGCGAGGTTGAGTCCGCGCCGAAGAGGCGCGAAGATGACATCCTCACAAAGGCGCTCGGAACCAAAGAACATCCTGGCCGAACTCGGGGAATTGGTAGCGATGTGCCCTGGAAGCATGGACTCCCTCAGTACAGCTCCCAATACAGGAAACGGAAAGTCTCCAAGGAAGAGAGGGACGCTCGTTTGAAGGCTGAACTTAAGGTTGAGGTCATTCAAGAACTAGAAGCTAGCATGAATGCAAGGGTGGAAGAAAGGGTTAACAAGGTGCTCGCCGACATGAATATACCCCGAGTCACAACACCTGCTGTGCAACCAACTCCTCGTGTACAACACGACGCGAGTCCGTCACAGCATAGGAGTAGTTGTGCATCCACAGAGGTGCCGGCCCCTGGTCTCCCGATCGCACCACTAGCTGCAGTGGACCACATCGAGGGCGCAGCACAGTGTGTCCTACTAGCGAGAGTCCACCCAACTTTCGCTCCTGAAGTCGCTGAGGGCATGGCTTTCAAGCCCTCGGTTACAGACAAGGTCCACGGCGCAGACCTGCTAGCTGGGTATGCCAAGGTGTCCATCGATACAGTAAAGGACACCTGGTCAGGCTATCCGCTGCCCGTGCCCCCAAATGATGAAATCATGACTTTGGGCGATGCGCGCAAGACGTTCATACAATGGCCCAAAGAAGACATAGTTGTGAAGATGACTCCTCGTCCAAGTCGACCGACGGAGCTTACACCTCCCAAGTGTAAGCTATCAATTGAGGCTCCCCGTGGACCGGCATTGTCAGTACCTCATTCTCCTGGTGGAGCTGATATGGACTTGGCAGATATAGCTCAAAGCTTGGCTCCAATAAAGACCACAAGAAAGGCCGATAGCTCCCCACCACTTGTCAAGGGCCAGAAGCGTGAACGCGGCAAGGGGAAGGTCGGGGAGTTGGCGCCGGAGCCAAAAAGGGGCAAGGCTGCGACGTCGATGCCGGTGAGCAAATCGGGGAAGGTCGTGAGGGCGCCAGCCCAATTTGAGCTAGGCATGCCATTGGTGGAGGACAATGTGTTAGCTGTGATGGGTATTGCTTGCCGAGAGCTACATAAGCAATACATGGAGCTAAGCAATGCCAAGCGGAAAATGAGGGAGTCATCCATAGTTGGACATCACGACCACCAGCCGTTCCTATCGTCGCCTGCCTATATAACTATAGGCTTTGATGACCTCTTCGACCTTTTCAGGATCCGGAAGTTGGACACTGGTCTTCTAAAATGCTACTCCTTGTTGTGTTGGATCGAGAGTCGTCGCCATGGTAATCAGGTTGGGTTCCTTGATCCATCCATGGTGAATGAGGTTAATTTACGACAGAGCTTCACTGAGGTGGTTGACTATGTCAACCGGTGTTTATGGGCCCATCAAGACAAGGAGTACATCATGTGCGCACACAACCAAGAGCGACATTGGATTCTCCTAGTCATTGTACCTAAGTGGAGTAGGGTTACCTACCTTAACTCCAATAAGTCCAAAGATTATGATTTCAGTGAAATCACCAAGGCCTTAAATATGGCTTGGGGCCCATATGTGGAAAAGGGTGGTAGGCACAAGGAGGGCAAGAATGAACTTTATCATGACACCAAGTTTGCATGCGCACAACAGATCGGAGACCAATGTGGTTTCCACGTGTGCCACAACATGTCAACACTTCTAAGAGAGGTGAAAGATTTCGACCCTGAGGTTGTTGCTAATGGCGAATAA

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Protein seq

MSTPGANPPSPTPARIQEEANPATEAIAEGHPGTTAVQQPEIHELPQEQHTSMSGETSASRSSRNPRSQNIWPTTVQVIREVDASGRPTAPRTVIGRWSNCCGLVARENFGILYKDIGKVTEAEKERAWTAMEKWFTFPAEAKDRLKRKAFQKMGKAWKNWKSKLFTEYVNPPGNHTPFDEYHQITEAVWEEFCSLKTTQEFRESSEAHRVLQQRNEHPHRLGTAGYIGKEAIWAQEDAAAAAANVPAPFSDIPEQRARNWARARGKVNPDGSVTFENKSDAVVYQELLGLVAEQASQSEVESAPKRREDDILTKALGTKEHPGRTRGIGSDVPWKHGLPQYSSQYRKRKVSKEERDARLKAELKVEVIQELEASMNARVEERVNKVLADMNIPRVTTPAVQPTPRVQHDASPSQHRSSCASTEVPAPGLPIAPLAAVDHIEGAAQCVLLARVHPTFAPEVAEGMAFKPSVTDKVHGADLLAGYAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPSRPTELTPPKCKLSIEAPRGPALSVPHSPGGADMDLADIAQSLAPIKTTRKADSSPPLVKGQKRERGKGKVGELAPEPKRGKAATSMPVSKSGKVVRAPAQFELGMPLVEDNVLAVMGIACRELHKQYMELSNAKRKMRESSIVGHHDHQPFLSSPAYITIGFDDLFDLFRIRKLDTGLLKCYSLLCWIESRRHGNQVGFLDPSMVNEVNLRQSFTEVVDYVNRCLWAHQDKEYIMCAHNQERHWILLVIVPKWSRVTYLNSNKSKDYDFSEITKALNMAWGPYVEKGGRHKEGKNELYHDTKFACAQQIGDQCGFHVCHNMSTLLREVKDFDPEVVANGE

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g43900 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0016760 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0016770 SBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0016660 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0016570 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0335000 SBH 0 0 0.0591145
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0432900 SBH 0.0011795 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0024690 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0016440 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0016760 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0016510 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G016940 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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