Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g42870 | OGI:02073080 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:25778079-25780795 | ||||||||
| Gene Symbol | Osmyb7, myb7, OsMYB38, MYB38 | ||||||||||
| DNA seq | CATAGACTAGCCACGTCTCCCCCCAAATCTTTTCGCACTTCCTTTCCCCTCCCTTTCACCCACTGAATCACTCGAAGTCGTCGTCTCGTCCACGGCCCTGCTGCCTCGTGCGCTCCGGCAGCTTTGCCGGGGGTGGGTGGGGGAGCGCGCGCCATGGGGAGGGCGCCGTGTTGCGACAAGAAGGGGCTCAAGAAGGGGCCGTGGACGCCGGAGGAGGACAAGCTCCTCGTCGACTACATCCAGGCCAACGGCCACGGCAGCTGGCGCCTCCTCCCCAAGCTCGCAGGTACCGGCTGGCTTCTCTGTTCTTGCGAGGCAATGCTTTGCTTCTGTCACGTTTTCGTGTTCGCGTGCCGCACTAGTGCTGAACTGCTGATCAGCACATTCTGAGAATCTGTCTTGATGATTTCGGCCTTAGATGCTGCTTATACTCGATTGCATCTGCATACCTTCAAGCTGCAATAATCACCCACAAGCTCGATTGGGGCTAAAATACACAAATTATTTCATCGTATACAAAGTAGGAGTACTGATTAAGTCGTACACTCGGCGAGTACTAGGCTCACTCGTACTACTCCCTGCTGGGTTTTCCTTGATCTTCACTCCAGGCATCAGCATTGCCTCCAGCTACGAACACTCGGTCACTCACTCCAGGGCTCCAGGCTCCTACCATTACCATGCCCATGTTGTGCTACTCTCTTTTCGTGCATGAGAAGTACTCGGTATTATTCACAGGAGCTGAGAGACTCTAGTCCGTTCCATCTGGATAACACTTCGTTTTGCGTTGCATGCAGGGCTGAACCGGTGCGGCAAGAGCTGCCGGCTGCGGTGGACGAACTACCTCCGGCCGGACATCAAGCGCGGGCCCTTCACCGCCGAGGAGCAGAAGTCCATCGTCCAGCTCCACGGCATCGTCGGCAACAAGTAAAGTCCCCCTTGCTCGTCTTCATCTCCTTCACCTAGCGAGCGAGTAGCCGAGCAGGACTGGCAGACTGACCAGCTCACATCGCACAGCCACTGTGTGCTAGTGTGCACTGCTCGGTGCGCAGCTAAGCTAGCGCACCACACCGTAGCACTGTACATGCACACTGTGCATGGCTCCTCACTCATTCAATGTTGACACATCGCATTCTCCGATCATCACATCATATATGATATATCCCAAACCGGCCGGCTGGTGTACTACCAGTATATATAGTAGTGGTACTTGCTTGTTTGGAGTATGTACATGTCTAGTTTAGCTTGGAGTCCCAGTGTATATTTAGGCCATTCCACTCTAAAATTTTTCTCCCTATCACATCGAACATTTTACGTTTGAACACCTACGCGAAGTATTAAATATAGGCTTAAAAATGACTAACTGCACAGACACAACTAATTTGAGAGACAAAACTTTAAAGCTAATTGCTCCATGATTTAACAATGTGATGCTAGATTAATTAGGCTTAATAAATTTTACTGATGAATTCTATAATTAGTTTTTTTTATTATTGCCCAAACACCTTATATAATACTCGATTATAATACCCGATGTGATACGCAAAATACTTACATCCCGGATCTAAACACCCCCTTTACTCATTTACTGTAGTTCTATACTGTGGTAAATATTCAATCCAGTTAGATATCACTAGAGTGTACTACTACTAGCAGCGCATTGATTAGAAGTGGTGGCACACACCTGCTGTTTGTTCTGGCCAGGTGGTCCATGATCGCGGCGCAGCTGCCCGGCCGGACCGACAACGAGATCAAGAACTATTGGAACACTCACCTCAAGAAGCAGCTGCGCCGGATGGGCCTCGACGATCCGCCGCCCGGGCCGGCGGCGGGCTGCCCGGCGGCGCGTCACATGGCGCAGTGGGAGACCGCGCGGCTCGAGGCCGAGGCGCGCCTCTCCCTCCTCTCCTCCTCCGGCGCCGCGGCGACGACGACGATCACCGCCGCCACCACCACCACCTCCGCCTCGTCGTCCTCCACCACCGCGGGGCCCGTCGCCGCCGCCGCGACGTCACCCGCGGACGTGTTCCTCCGCCTCTGGAACTCCAGCATCGGGGACTCCTTCCGCAAGCTAGCCGTGGTGGCGGCGGGGTCGTCGTCCCCTTCGCGGGCGGACGTCACGAAGGACGCTGTGAAGCAGGAGGAGGAGGCGGCGCCGGCCGGGGACGACTCGTCGGCGGCGTCCAACGAGGTGGAGGCGGCGACCATGGCGGTGGACGAGTACCAGATGTTCCTCGACTTCGCCGGCGAGGAGCTGGGCCTGTTCCACGGCCGGTACGGCGGCTTCTCGCTCTTCCCGCCGGTCGACTTGCTCGAGGCGTCGCTGGAGACGGCGTTCAAGTGACCCGTACGTCGACGACGACCTTGCTCGCCGCGCGCCATGTACGACGTACTACGTACTCCGCAGCCGCAGCAGCAGCATCATGCCTCGACGTAGGAGTATGTATATAAGCAAGTGTTCTGGGGCGTCCGGACAGTAGGCGCGTCCGTGTGAAGGGTAGGACACACGTACGAGACGTGGGAGAAAATTTTGGGGATCAATTAGGGTTCTAAGGATAATCTGTAGCTTGGGGTTTAGGCATGGGGGGAACATCATGGTGTGTATTAGTATTACGGCCTTTTGGATGGCATTCTCTGGGGGGCAAGGGGCTTACCGGAGATGCTCTAATACATTCAATGATGTTCGATCTTTCAGTGTTGGATATGGAGCTGGTTTTATC
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| CDS seq | ATGGGGAGGGCGCCGTGTTGCGACAAGAAGGGGCTCAAGAAGGGGCCGTGGACGCCGGAGGAGGACAAGCTCCTCGTCGACTACATCCAGGCCAACGGCCACGGCAGCTGGCGCCTCCTCCCCAAGCTCGCAGGGCTGAACCGGTGCGGCAAGAGCTGCCGGCTGCGGTGGACGAACTACCTCCGGCCGGACATCAAGCGCGGGCCCTTCACCGCCGAGGAGCAGAAGTCCATCGTCCAGCTCCACGGCATCGTCGGCAACAAGTGGTCCATGATCGCGGCGCAGCTGCCCGGCCGGACCGACAACGAGATCAAGAACTATTGGAACACTCACCTCAAGAAGCAGCTGCGCCGGATGGGCCTCGACGATCCGCCGCCCGGGCCGGCGGCGGGCTGCCCGGCGGCGCGTCACATGGCGCAGTGGGAGACCGCGCGGCTCGAGGCCGAGGCGCGCCTCTCCCTCCTCTCCTCCTCCGGCGCCGCGGCGACGACGACGATCACCGCCGCCACCACCACCACCTCCGCCTCGTCGTCCTCCACCACCGCGGGGCCCGTCGCCGCCGCCGCGACGTCACCCGCGGACGTGTTCCTCCGCCTCTGGAACTCCAGCATCGGGGACTCCTTCCGCAAGCTAGCCGTGGTGGCGGCGGGGTCGTCGTCCCCTTCGCGGGCGGACGTCACGAAGGACGCTGTGAAGCAGGAGGAGGAGGCGGCGCCGGCCGGGGACGACTCGTCGGCGGCGTCCAACGAGGTGGAGGCGGCGACCATGGCGGTGGACGAGTACCAGATGTTCCTCGACTTCGCCGGCGAGGAGCTGGGCCTGTTCCACGGCCGGTACGGCGGCTTCTCGCTCTTCCCGCCGGTCGACTTGCTCGAGGCGTCGCTGGAGACGGCGTTCAAGTGA
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| Protein seq | MGRAPCCDKKGLKKGPWTPEEDKLLVDYIQANGHGSWRLLPKLAGLNRCGKSCRLRWTNYLRPDIKRGPFTAEEQKSIVQLHGIVGNKWSMIAAQLPGRTDNEIKNYWNTHLKKQLRRMGLDDPPPGPAAGCPAARHMAQWETARLEAEARLSLLSSSGAAATTTITAATTTTSASSSSTTAGPVAAAATSPADVFLRLWNSSIGDSFRKLAVVAAGSSSPSRADVTKDAVKQEEEAAPAGDDSSAASNEVEAATMAVDEYQMFLDFAGEELGLFHGRYGGFSLFPPVDLLEASLETAFK |
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| Function | Transcription factor MYB17 [UniProtKB/Swiss-Prot:Q9M2D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42870 | LOC_Os02g42870.1 | Chr02 | 25778079 | 25780795 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGGAGGGCGCCGTGTTGCGACAAGAAGGGGCTCAAGAAGGGGCCGTGGACGCCGGAGGAGGACAAGCTCCTCGTCGACTACATCCAGGCCAACGGCCACGGCAGCTGGCGCCTCCTCCCCAAGCTCGCAGGGCTGAACCGGTGCGGCAAGAGCTGCCGGCTGCGGTGGACGAACTACCTCCGGCCGGACATCAAGCGCGGGCCCTTCACCGCCGAGGAGCAGAAGTCCATCGTCCAGCTCCACGGCATCGTCGGCAACAAGTGGTCCATGATCGCGGCGCAGCTGCCCGGCCGGACCGACAACGAGATCAAGAACTATTGGAACACTCACCTCAAGAAGCAGCTGCGCCGGATGGGCCTCGACGATCCGCCGCCCGGGCCGGCGGCGGGCTGCCCGGCGGCGCGTCACATGGCGCAGTGGGAGACCGCGCGGCTCGAGGCCGAGGCGCGCCTCTCCCTCCTCTCCTCCTCCGGCGCCGCGGCGACGACGACGATCACCGCCGCCACCACCACCACCTCCGCCTCGTCGTCCTCCACCACCGCGGGGCCCGTCGCCGCCGCCGCGACGTCACCCGCGGACGTGTTCCTCCGCCTCTGGAACTCCAGCATCGGGGACTCCTTCCGCAAGCTAGCCGTGGTGGCGGCGGGGTCGTCGTCCCCTTCGCGGGCGGACGTCACGAAGGACGCTGTGAAGCAGGAGGAGGAGGCGGCGCCGGCCGGGGACGACTCGTCGGCGGCGTCCAACGAGGTGGAGGCGGCGACCATGGCGGTGGACGAGTACCAGATGTTCCTCGACTTCGCCGGCGAGGAGCTGGGCCTGTTCCACGGCCGGTACGGCGGCTTCTCGCTCTTCCCGCCGGTCGACTTGCTCGAGGCGTCGCTGGAGACGGCGTTCAAGTGA
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| Protein seq | MGRAPCCDKKGLKKGPWTPEEDKLLVDYIQANGHGSWRLLPKLAGLNRCGKSCRLRWTNYLRPDIKRGPFTAEEQKSIVQLHGIVGNKWSMIAAQLPGRTDNEIKNYWNTHLKKQLRRMGLDDPPPGPAAGCPAARHMAQWETARLEAEARLSLLSSSGAAATTTITAATTTTSASSSSTTAGPVAAAATSPADVFLRLWNSSIGDSFRKLAVVAAGSSSPSRADVTKDAVKQEEEAAPAGDDSSAASNEVEAATMAVDEYQMFLDFAGEELGLFHGRYGGFSLFPPVDLLEASLETAFK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0641900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45060 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0641900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026720 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026830 | RBH | 0.000000 | 0.000000 | 0.225946 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026700 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026380 | RBH | 0.0 | 0.0 | 1.746237 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0419800 | RBH | 0.4156415 | 0.239574 | 3.538841 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026200 | RBH | 0.0 | 0.0 | 0.130778 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0447700 | RBH | 0.537853 | 0.0698165 | 5.0263335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026550 | RBH | 0.059386 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026390 | RBH | 0.0 | 0.0 | 0.164671 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026700 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026430 | RBH | 0.0 | 0.0 | 0.517386 |
