Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g42780 | OGI:02072930 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:25723955-25726082 | ||||||||
| Gene Symbol | SIT1, OsSIT1 | ||||||||||
| DNA seq | TCAGAGTAATCTACGATATTTCCTTTTCACCGAGTAATCTATCACTATGGTCAAATCCTATAGCGAAGAGACTAAAACCTTGTGGTCATCTCGCTCGAGGAATGTCAGAGATATTACCAGCTACCGACGACGCAACAGAGCATGAGTTGCCCATCTGATTTTGCATCAAGGCCAGCATGTTACAGCTTAGGTGAGCTTGTGATAGCTCTGGGAGTGGCATGGCACCGTCTAGCAACTGCACGACTTGCCGTATGCCCGGACGAGCACTGGGCAGAGGATGTGAACAAAGCAAGCATAGTTTCAGCACCAGGCTTGCTTCTTCCACGGCAAAGTCGCCTTGCAGCCGTGGGTCCACAGCGTCAGTGACCGTCCCTTGCCGCCAATGCTCCAGCACCATGTCCACCAACAAGAGTTGACCGCCGTTCGTGTCTTGCAAGACAGGCCGCCGTCCGCAGGTAACCTCTAGCATGAACACACCGAAGGCGAAGATGTCGGACGCCTTCGATGGCCTGCCGGTGTGCCCTAGCTCGGGGGCTAGGTACCCTATTGTGCCAACCACGTGTGTGGTGTGTGGGTCGGTGCCACGATCATATAACCTTGCAAGGCCAAAGTCACCTAGCCGACAGTTCATTTCGGCGTCCAACAATACGTTGCTTGCCTTGATGTCTCGATGCAGAACGACTTGTTCCCAATCCTCATGGAGATACAATATGCTCGATGCGATGCCTTTGATGATTCTAAACCTTTGAGCCCAACTCAAGATTTTGCTGTTCTCAGCATACAGATACTTATCAAGACTACCATTTGGCATATAATCATAGACTAACAGTAGCTCACCCTTCTGCCGACAATATCCAAGCAACTGCACAAGGTTCCGGTGTCGAAGTTGACCAATGCTAACCACCTCGGCAATGAACTCCTTCATTCCCTGCCTCGACTCGTGAGATACCTTCTTCACTGCAATCTCCACTCGGGATACCAGTAGTACTCCCTTGTACACCCTTCCAAATCCTCCAAAGCCAAGCAATCGCTCATCGGAGAAACCATTCGTGGCACGGAACAGATCCTTGTATGAGAACCGGTGTGGCCCAAACGCAACCTCCCACTCCTCTTTAAGCTCCGCATACCTGCGTCGTCTCCGGTGAATCACAAGAACAGCAATGGCCAATGCCGACACCAGTGCGGCCGAGGCTATGGGCAATAGTATCTTCAGAACGTTGGACGGAGCCCTGGCGATCGTGACAGGCAACGCCGGCAGCTTTGATACGTTTAGCGATGGTGCTGGCCCGTCCATCTTGAAGCTCCAGGCAAGCACGTAGTGGCGGCTCGCGACGACGCCGGTGGACGAGGAGAAGCCGACGTAGGCTTCGTCTTCGATCACGGCCGAGAGGTTCACGGCGGCGGAGAGCAGCGGCGTCGTCGGCTTGGGCAGCTCGAGGGGAGCCATGGTGACGTTGACGAGCGAGGTGCGCGCGTCGAAGTCCACCCACACCCGCGCCGCCGCGCGGCTGAGCAGGCTCATGTTCACGAACGCGCCGGTGCGGTCGTCGTGGTAGCCCGCGTCGTCGGCGGCGGCGGACGCGAGGCCGTCCACGTCGATCCCGACGTGGTTGTCGCTCATGTCGCCGAACTCGGCGTTGACGATGGTGTCCAGCTCCACGGCGAGGAAGTGGTTGCTGGCGTTGCCGTTGTTGCGCGCGTTGGCCAGGCCCATGTACTGGCTCTGCAGCGCCGACGAGAAGTCGCGGCTCTTGGCGACGACGAACGCCAGGCCGGGGCTGCTCAGGTCGGCGTACTCGCTGACGATGCCGAACACGAACGCCGTCGAGAAGGACCGCACGGTGGAGGATCCGCCGCCGCTCGTCGCCTCGTGAAAGAAACGCAGGGGAGAAGGGTAGAAGGCGTGGCCTTTCAGCAGAGTCGTGCCGTTCGTCAGCATGAGGAGGCCGCCCGGCGTGACCACGGCCGTGCCGTCGAGTGTGAGGTTCACGCCGGCGAAGCCGTCGAAGGTGAACTGGTCATCAACGGCGGCTGCGGCGAGGTGGAAACTCCCAAGGCTTAGGAAGAGAATTAGAGGAAGGGACCGCATGATTAGCTCGGGACGCCGCATGGCGTTTGCGCCAAACTT
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| CDS seq | ATGCGGCGTCCCGAGCTAATCATGCGGTCCCTTCCTCTAATTCTCTTCCTAAGCCTTGGGAGTTTCCACCTCGCCGCAGCCGCCGTTGATGACCAGTTCACCTTCGACGGCTTCGCCGGCGTGAACCTCACACTCGACGGCACGGCCGTGGTCACGCCGGGCGGCCTCCTCATGCTGACGAACGGCACGACTCTGCTGAAAGGCCACGCCTTCTACCCTTCTCCCCTGCGTTTCTTTCACGAGGCGACGAGCGGCGGCGGATCCTCCACCGTGCGGTCCTTCTCGACGGCGTTCGTGTTCGGCATCGTCAGCGAGTACGCCGACCTGAGCAGCCCCGGCCTGGCGTTCGTCGTCGCCAAGAGCCGCGACTTCTCGTCGGCGCTGCAGAGCCAGTACATGGGCCTGGCCAACGCGCGCAACAACGGCAACGCCAGCAACCACTTCCTCGCCGTGGAGCTGGACACCATCGTCAACGCCGAGTTCGGCGACATGAGCGACAACCACGTCGGGATCGACGTGGACGGCCTCGCGTCCGCCGCCGCCGACGACGCGGGCTACCACGACGACCGCACCGGCGCGTTCGTGAACATGAGCCTGCTCAGCCGCGCGGCGGCGCGGGTGTGGGTGGACTTCGACGCGCGCACCTCGCTCGTCAACGTCACCATGGCTCCCCTCGAGCTGCCCAAGCCGACGACGCCGCTGCTCTCCGCCGCCGTGAACCTCTCGGCCGTGATCGAAGACGAAGCCTACGTCGGCTTCTCCTCGTCCACCGGCGTCGTCGCGAGCCGCCACTACGTGCTTGCCTGGAGCTTCAAGATGGACGGGCCAGCACCATCGCTAAACGTATCAAAGCTGCCGGCGTTGCCTGTCACGATCGCCAGGGCTCCGTCCAACGTTCTGAAGATACTATTGCCCATAGCCTCGGCCGCACTGGTGTCGGCATTGGCCATTGCTGTTCTTGTGATTCACCGGAGACGACGCAGGTATGCGGAGCTTAAAGAGGAGTGGGAGGTTGCGTTTGGGCCACACCGGTTCTCATACAAGGATCTGTTCCGTGCCACGAATGGTTTCTCCGATGAGCGATTGCTTGGCTTTGGAGGATTTGGAAGGGTGTACAAGGGAGTACTACTGGTATCCCGAGTGGAGATTGCAGTGAAGAAGGTATCTCACGAGTCGAGGCAGGGAATGAAGGAGTTCATTGCCGAGGTGGTTAGCATTGGTCAACTTCGACACCGGAACCTTGTGCAGTTGCTTGGATATTGTCGGCAGAAGGGTGAGCTACTGTTAGTCTATGATTATATGCCAAATGGTAGTCTTGATAAGTATCTGTATGCTGAGAACAGCAAAATCTTGAGTTGGGCTCAAAGGTTTAGAATCATCAAAGGCATCGCATCGAGCATATTGTATCTCCATGAGGATTGGGAACAAGTCGTTCTGCATCGAGACATCAAGGCAAGCAACGTATTGTTGGACGCCGAAATGAACTGTCGGCTAGGTGACTTTGGCCTTGCAAGGTTATATGATCGTGGCACCGACCCACACACCACACACGTGGTTGGCACAATAGGGTACCTAGCCCCCGAGCTAGGGCACACCGGCAGGCCATCGAAGGCGTCCGACATCTTCGCCTTCGGTGTGTTCATGCTAGAGGTTACCTGCGGACGGCGGCCTGTCTTGCAAGACACGAACGGCGGTCAACTCTTGTTGGTGGACATGGTGCTGGAGCATTGGCGGCAAGGGACGGTCACTGACGCTGTGGACCCACGGCTGCAAGGCGACTTTGCCGTGGAAGAAGCAAGCCTGGTGCTGAAACTATGCTTGCTTTGTTCACATCCTCTGCCCAGTGCTCGTCCGGGCATACGGCAAGTCGTGCAGTTGCTAGACGGTGCCATGCCACTCCCAGAGCTATCACAAGCTCACCTAAGCTGTAACATGCTGGCCTTGATGCAAAATCAGATGGGCAACTCATGCTCTGTTGCGTCGTCGGTAGCTGGTAATATCTCTGACATTCCTCGAGCGAGATGA
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| Protein seq | MRRPELIMRSLPLILFLSLGSFHLAAAAVDDQFTFDGFAGVNLTLDGTAVVTPGGLLMLTNGTTLLKGHAFYPSPLRFFHEATSGGGSSTVRSFSTAFVFGIVSEYADLSSPGLAFVVAKSRDFSSALQSQYMGLANARNNGNASNHFLAVELDTIVNAEFGDMSDNHVGIDVDGLASAAADDAGYHDDRTGAFVNMSLLSRAAARVWVDFDARTSLVNVTMAPLELPKPTTPLLSAAVNLSAVIEDEAYVGFSSSTGVVASRHYVLAWSFKMDGPAPSLNVSKLPALPVTIARAPSNVLKILLPIASAALVSALAIAVLVIHRRRRRYAELKEEWEVAFGPHRFSYKDLFRATNGFSDERLLGFGGFGRVYKGVLLVSRVEIAVKKVSHESRQGMKEFIAEVVSIGQLRHRNLVQLLGYCRQKGELLLVYDYMPNGSLDKYLYAENSKILSWAQRFRIIKGIASSILYLHEDWEQVVLHRDIKASNVLLDAEMNCRLGDFGLARLYDRGTDPHTTHVVGTIGYLAPELGHTGRPSKASDIFAFGVFMLEVTCGRRPVLQDTNGGQLLLVDMVLEHWRQGTVTDAVDPRLQGDFAVEEASLVLKLCLLCSHPLPSARPGIRQVVQLLDGAMPLPELSQAHLSCNMLALMQNQMGNSCSVASSVAGNISDIPRAR |
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| Function | L-type lectin-domain containing receptor kinase SIT1 [UniProtKB/Swiss-Prot:Q6H7D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42780 | LOC_Os02g42780.1 | Chr02 | 25723955 | 25726082 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGGCGTCCCGAGCTAATCATGCGGTCCCTTCCTCTAATTCTCTTCCTAAGCCTTGGGAGTTTCCACCTCGCCGCAGCCGCCGTTGATGACCAGTTCACCTTCGACGGCTTCGCCGGCGTGAACCTCACACTCGACGGCACGGCCGTGGTCACGCCGGGCGGCCTCCTCATGCTGACGAACGGCACGACTCTGCTGAAAGGCCACGCCTTCTACCCTTCTCCCCTGCGTTTCTTTCACGAGGCGACGAGCGGCGGCGGATCCTCCACCGTGCGGTCCTTCTCGACGGCGTTCGTGTTCGGCATCGTCAGCGAGTACGCCGACCTGAGCAGCCCCGGCCTGGCGTTCGTCGTCGCCAAGAGCCGCGACTTCTCGTCGGCGCTGCAGAGCCAGTACATGGGCCTGGCCAACGCGCGCAACAACGGCAACGCCAGCAACCACTTCCTCGCCGTGGAGCTGGACACCATCGTCAACGCCGAGTTCGGCGACATGAGCGACAACCACGTCGGGATCGACGTGGACGGCCTCGCGTCCGCCGCCGCCGACGACGCGGGCTACCACGACGACCGCACCGGCGCGTTCGTGAACATGAGCCTGCTCAGCCGCGCGGCGGCGCGGGTGTGGGTGGACTTCGACGCGCGCACCTCGCTCGTCAACGTCACCATGGCTCCCCTCGAGCTGCCCAAGCCGACGACGCCGCTGCTCTCCGCCGCCGTGAACCTCTCGGCCGTGATCGAAGACGAAGCCTACGTCGGCTTCTCCTCGTCCACCGGCGTCGTCGCGAGCCGCCACTACGTGCTTGCCTGGAGCTTCAAGATGGACGGGCCAGCACCATCGCTAAACGTATCAAAGCTGCCGGCGTTGCCTGTCACGATCGCCAGGGCTCCGTCCAACGTTCTGAAGATACTATTGCCCATAGCCTCGGCCGCACTGGTGTCGGCATTGGCCATTGCTGTTCTTGTGATTCACCGGAGACGACGCAGGTATGCGGAGCTTAAAGAGGAGTGGGAGGTTGCGTTTGGGCCACACCGGTTCTCATACAAGGATCTGTTCCGTGCCACGAATGGTTTCTCCGATGAGCGATTGCTTGGCTTTGGAGGATTTGGAAGGGTGTACAAGGGAGTACTACTGGTATCCCGAGTGGAGATTGCAGTGAAGAAGGTATCTCACGAGTCGAGGCAGGGAATGAAGGAGTTCATTGCCGAGGTGGTTAGCATTGGTCAACTTCGACACCGGAACCTTGTGCAGTTGCTTGGATATTGTCGGCAGAAGGGTGAGCTACTGTTAGTCTATGATTATATGCCAAATGGTAGTCTTGATAAGTATCTGTATGCTGAGAACAGCAAAATCTTGAGTTGGGCTCAAAGGTTTAGAATCATCAAAGGCATCGCATCGAGCATATTGTATCTCCATGAGGATTGGGAACAAGTCGTTCTGCATCGAGACATCAAGGCAAGCAACGTATTGTTGGACGCCGAAATGAACTGTCGGCTAGGTGACTTTGGCCTTGCAAGGTTATATGATCGTGGCACCGACCCACACACCACACACGTGGTTGGCACAATAGGGTACCTAGCCCCCGAGCTAGGGCACACCGGCAGGCCATCGAAGGCGTCCGACATCTTCGCCTTCGGTGTGTTCATGCTAGAGGTTACCTGCGGACGGCGGCCTGTCTTGCAAGACACGAACGGCGGTCAACTCTTGTTGGTGGACATGGTGCTGGAGCATTGGCGGCAAGGGACGGTCACTGACGCTGTGGACCCACGGCTGCAAGGCGACTTTGCCGTGGAAGAAGCAAGCCTGGTGCTGAAACTATGCTTGCTTTGTTCACATCCTCTGCCCAGTGCTCGTCCGGGCATACGGCAAGTCGTGCAGTTGCTAGACGGTGCCATGCCACTCCCAGAGCTATCACAAGCTCACCTAAGCTGTAACATGCTGGCCTTGATGCAAAATCAGATGGGCAACTCATGCTCTGTTGCGTCGTCGGTAGCTGGTAATATCTCTGACATTCCTCGAGCGAGATGA
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| Protein seq | MRRPELIMRSLPLILFLSLGSFHLAAAAVDDQFTFDGFAGVNLTLDGTAVVTPGGLLMLTNGTTLLKGHAFYPSPLRFFHEATSGGGSSTVRSFSTAFVFGIVSEYADLSSPGLAFVVAKSRDFSSALQSQYMGLANARNNGNASNHFLAVELDTIVNAEFGDMSDNHVGIDVDGLASAAADDAGYHDDRTGAFVNMSLLSRAAARVWVDFDARTSLVNVTMAPLELPKPTTPLLSAAVNLSAVIEDEAYVGFSSSTGVVASRHYVLAWSFKMDGPAPSLNVSKLPALPVTIARAPSNVLKILLPIASAALVSALAIAVLVIHRRRRRYAELKEEWEVAFGPHRFSYKDLFRATNGFSDERLLGFGGFGRVYKGVLLVSRVEIAVKKVSHESRQGMKEFIAEVVSIGQLRHRNLVQLLGYCRQKGELLLVYDYMPNGSLDKYLYAENSKILSWAQRFRIIKGIASSILYLHEDWEQVVLHRDIKASNVLLDAEMNCRLGDFGLARLYDRGTDPHTTHVVGTIGYLAPELGHTGRPSKASDIFAFGVFMLEVTCGRRPVLQDTNGGQLLLVDMVLEHWRQGTVTDAVDPRLQGDFAVEEASLVLKLCLLCSHPLPSARPGIRQVVQLLDGAMPLPELSQAHLSCNMLALMQNQMGNSCSVASSVAGNISDIPRAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.101992 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0640500 | RBH | 0.151033 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44900 | RBH | 1.314383 | 1.327758 | 0.239800 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0640500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026660 | RBH | 0.0 | 6.025836 | 0.286439 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026770 | RBH | 0.000000 | 0.513809 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026640 | RBH | 0.0 | 1.848224 | 0.162359 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026210 | RBH | 0.0 | 0.083867 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026320 | RBH | 0.0 | 0.0 | 1.828285 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0418800 | RBH | 0.0969675 | 2.0441145 | 0.044716 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026130 | RBH | 0.0 | 0.076635 | 0.058884 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0446500 | RBH | 0.283611 | 2.803248 | 0.202 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026530 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026330 | RBH | 0.0 | 0.281021 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026010 | RBH | 0.0 | 0.653750 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026640 | RBH | 0.0 | 0.424952 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026370 | RBH | 0.0 | 3.777402 | 0.0 |
