Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g42560 | OGI:02072650 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:25583470-25585697 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGAACAGAAGAACCTGCCGATAAACTGGAAATGAATATGAAATCAATACACCAGAAGATTCAAGTGTGCAGCCTAAACACTGACGACAAGAGTATACATTGCCAATGTCACACAATGACCTACATCTGAACAATGTATCACTAAACCAAAACAGTGGACCACAATCCACAAACACATCTGTGACTGAAGCAGCAATCCATCTTGCCACTAGAAACCCAATCTACTACGAATGACACTGAGCAGTGATCACAAATTCTACAACCTAACAGCAGCATACATGAGTAACATGGATAATTTTTTCCTTCTATGACATGGCCGAGACGGCCCGAACACCCGACCGGCCGCTGGCCACGCTGCCGCCGCCGCCGCCGCCGCTGCGATGAGCACCGCGTCCACGATGAACGACGTTGTTGCTGTTACCACCAGAGCTGCCGGCGCGCGACCGGACGCTGTGCTCCGGCTGCGCCGCCCTCTGCTTGCTGCTCTGCCGGGAGCGGTTCAGCGGGCTGCGCGCGCCGGCGTGGCTGCTGCTGCCCTGCTCGACCACCTCGTCGCCGTTGTTCGTCGAGCGCGACGCGCTCCACGTCCGGTCCGTGGACTCCACCGAGTTGGGCTCCCACGACGGCGTCCACGGGTTGCCGGAGACGCTGTTGCTCCCGGCGGACTCCTGCGGCTCGGTCTCGCCGCCGCCGCCGCGGATGTCCCCCCGTGGGGCGGTGGCGTGCCTCTTGTGCACGCCCGGCTCCGCGAGGTCGTCCATGCCGCCGCCGAGCGGCGCGTTGACCGATCCCCTGTCGTTGGCGGAGCGGTCGGGCTCGCAGGAGTGGCTGTCCGACGACGAGGAGTTGAGGTCGGCCACGGCGTCGAGGATGGAGCACGCCTTGGAGACGCACGCCGGGAGCGAGAAGCTGGGCAGCGTCGCGGCGGTGGCGGCCACGGAGGTGGTGTTCTGCTGCTGGTGGTAGCTCTGGATGTCCTCGAGGAGCTGGGTGGCGTACGAGTTGGTGTTCTGGTCGAAGTCCCGCGACGCCCGGCGAGACCGGGCCTTCGTGTTGAGGCTCTCGGCCGTGGCACTGGCCGTGCGCGTCGCCGTCGTCTTAGACGCGGGCGGCGCCGCCGCAACGAGGACCGTCTCCTCCACGACCTTCGGCTTCTCCTTTGAACGCTCCGTGGCCTTCTGGGGAGCGGCGGCGATGGCGAGCGCGTTTTCCGAAATTTTCTGGATTCACGCGAGGGATTTGAGATAAGAGGAGGGAATTGCGGCAATAGCTGGCATAAAAAAAACTCGAAATTTGTATAGGTTGTTTACCTTGTGGTGATTGGCACCATTGTTGTTGCGGAGGGAGTTCTCGTCGATCTCCGCCATGGGGCTGCGCCTGTACGGCGACGAGCTCCGGCTCAGCGAAGGCGTCTGCGCCGCCGTCATCTGCCCGCCTCCAGCATTCTCATTCCCTGCAGCCACCATCCTCGCAGGCGAGCTTGATCTCGGAGACGCGCACCTCTTGCCGGACGCGGCCGCGGGCGACGGCGCGCGCGCCTTCTCCCTCGCCGGGACGGACACCATCTTCCCCGGCTGCTGTCTCACCACCCGCTCTCCGCCGCCGCCGCCTCCGCCGGAACCTGCCGGAGCCGGTGCAGGGGACACACCTTCGGCACGCCGCCCAGGCGATCGGCTCGCTCTACGGCTGCCGCCGCCGCTGCTCCTCTCCCGACTACCAGAGCGCTTCCGCTGCGGCGAGCCCCGGTGAGGCGACGGCCTGGACACCGCGCCGCCATGCCTCTCCCAATCGCGCTCCTCATCCCCACCACCACCACACCCGGGTCTCCTCTCCTGATCAAAGTCGTAGCTCCTCTTCGACCTCCGGTGACCGGCCCCCGTCTCGCTCGACGCCGCCCTCCCGGACGAGCTCCGGCTGAGGCGGCCGCACTGGATGAGGATCGCGTCCACCTCCTCCTTGGTGCAGCTCGACGTCCGCACCGGCATGGTGGGCACCACCACCACCGGCCTCCTCTCCTCCACATTCACGGCCCCGGACTTCGTCTTCACGACGAACACCGCCTTCTTGTCTCCCGCCGCCTCCACCGCCCTGCCCGCCCTCGTCTTCTTGCCCTTGTCGTCCGCGGCGATCTTGCCGGACTTCCTCTTCACCTGCGGGGAGGTGGTGGCCTCTGCACCACCGTGCGGTGGCGTCGTCTCCTTCTGCGTCTTGCTGCAGCAGAGACCCAT
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| CDS seq | ATGGGTCTCTGCTGCAGCAAGACGCAGAAGGAGACGACGCCACCGCACGGTGGTGCAGAGGCCACCACCTCCCCGCAGGTGAAGAGGAAGTCCGGCAAGATCGCCGCGGACGACAAGGGCAAGAAGACGAGGGCGGGCAGGGCGGTGGAGGCGGCGGGAGACAAGAAGGCGGTGTTCGTCGTGAAGACGAAGTCCGGGGCCGTGAATGTGGAGGAGAGGAGGCCGGTGGTGGTGGTGCCCACCATGCCGGTGCGGACGTCGAGCTGCACCAAGGAGGAGGTGGACGCGATCCTCATCCAGTGCGGCCGCCTCAGCCGGAGCTCGTCCGGGAGGGCGGCGTCGAGCGAGACGGGGGCCGGTCACCGGAGGTCGAAGAGGAGCTACGACTTTGATCAGGAGAGGAGACCCGGGTGTGGTGGTGGTGGGGATGAGGAGCGCGATTGGGAGAGGCATGGCGGCGCGGTGTCCAGGCCGTCGCCTCACCGGGGCTCGCCGCAGCGGAAGCGCTCTGGTAGTCGGGAGAGGAGCAGCGGCGGCGGCAGCCGTAGAGCGAGCCGATCGCCTGGGCGGCGTGCCGAAGGTGTGTCCCCTGCACCGGCTCCGGCAGGTTCCGGCGGAGGCGGCGGCGGCGGAGAGCGGGTGGTGAGACAGCAGCCGGGGAAGATGGTGTCCGTCCCGGCGAGGGAGAAGGCGCGCGCGCCGTCGCCCGCGGCCGCGTCCGGCAAGAGGTGCGCGTCTCCGAGATCAAGCTCGCCTGCGAGGATGGTGGCTGCAGGGAATGAGAATGCTGGAGGCGGGCAGATGACGGCGGCGCAGACGCCTTCGCTGAGCCGGAGCTCGTCGCCGTACAGGCGCAGCCCCATGGCGGAGATCGACGAGAACTCCCTCCGCAACAACAATGGTGCCAATCACCACAAGAAAATTTCGGAAAACGCGCTCGCCATCGCCGCCGCTCCCCAGAAGGCCACGGAGCGTTCAAAGGAGAAGCCGAAGGTCGTGGAGGAGACGGTCCTCGTTGCGGCGGCGCCGCCCGCGTCTAAGACGACGGCGACGCGCACGGCCAGTGCCACGGCCGAGAGCCTCAACACGAAGGCCCGGTCTCGCCGGGCGTCGCGGGACTTCGACCAGAACACCAACTCGTACGCCACCCAGCTCCTCGAGGACATCCAGAGCTACCACCAGCAGCAGAACACCACCTCCGTGGCCGCCACCGCCGCGACGCTGCCCAGCTTCTCGCTCCCGGCGTGCGTCTCCAAGGCGTGCTCCATCCTCGACGCCGTGGCCGACCTCAACTCCTCGTCGTCGGACAGCCACTCCTGCGAGCCCGACCGCTCCGCCAACGACAGGGGATCGGTCAACGCGCCGCTCGGCGGCGGCATGGACGACCTCGCGGAGCCGGGCGTGCACAAGAGGCACGCCACCGCCCCACGGGGGGACATCCGCGGCGGCGGCGGCGAGACCGAGCCGCAGGAGTCCGCCGGGAGCAACAGCGTCTCCGGCAACCCGTGGACGCCGTCGTGGGAGCCCAACTCGGTGGAGTCCACGGACCGGACGTGGAGCGCGTCGCGCTCGACGAACAACGGCGACGAGGTGGTCGAGCAGGGCAGCAGCAGCCACGCCGGCGCGCGCAGCCCGCTGAACCGCTCCCGGCAGAGCAGCAAGCAGAGGGCGGCGCAGCCGGAGCACAGCGTCCGGTCGCGCGCCGGCAGCTCTGGTGGTAACAGCAACAACGTCGTTCATCGTGGACGCGGTGCTCATCGCAGCGGCGGCGGCGGCGGCGGCAGCGTGGCCAGCGGCCGGTCGGGTGTTCGGGCCGTCTCGGCCATGTCATAG
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| Protein seq | MGLCCSKTQKETTPPHGGAEATTSPQVKRKSGKIAADDKGKKTRAGRAVEAAGDKKAVFVVKTKSGAVNVEERRPVVVVPTMPVRTSSCTKEEVDAILIQCGRLSRSSSGRAASSETGAGHRRSKRSYDFDQERRPGCGGGGDEERDWERHGGAVSRPSPHRGSPQRKRSGSRERSSGGGSRRASRSPGRRAEGVSPAPAPAGSGGGGGGGERVVRQQPGKMVSVPAREKARAPSPAAASGKRCASPRSSSPARMVAAGNENAGGGQMTAAQTPSLSRSSSPYRRSPMAEIDENSLRNNNGANHHKKISENALAIAAAPQKATERSKEKPKVVEETVLVAAAPPASKTTATRTASATAESLNTKARSRRASRDFDQNTNSYATQLLEDIQSYHQQQNTTSVAATAATLPSFSLPACVSKACSILDAVADLNSSSSDSHSCEPDRSANDRGSVNAPLGGGMDDLAEPGVHKRHATAPRGDIRGGGGETEPQESAGSNSVSGNPWTPSWEPNSVESTDRTWSASRSTNNGDEVVEQGSSSHAGARSPLNRSRQSSKQRAAQPEHSVRSRAGSSGGNSNNVVHRGRGAHRSGGGGGGSVASGRSGVRAVSAMS |
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| Function | Uncharacterized protein At1g65710 [UniProtKB/Swiss-Prot:Q5XVH5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42560 | LOC_Os02g42560.1 | Chr02 | 25583470 | 25585697 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGTCTCTGCTGCAGCAAGACGCAGAAGGAGACGACGCCACCGCACGGTGGTGCAGAGGCCACCACCTCCCCGCAGGTGAAGAGGAAGTCCGGCAAGATCGCCGCGGACGACAAGGGCAAGAAGACGAGGGCGGGCAGGGCGGTGGAGGCGGCGGGAGACAAGAAGGCGGTGTTCGTCGTGAAGACGAAGTCCGGGGCCGTGAATGTGGAGGAGAGGAGGCCGGTGGTGGTGGTGCCCACCATGCCGGTGCGGACGTCGAGCTGCACCAAGGAGGAGGTGGACGCGATCCTCATCCAGTGCGGCCGCCTCAGCCGGAGCTCGTCCGGGAGGGCGGCGTCGAGCGAGACGGGGGCCGGTCACCGGAGGTCGAAGAGGAGCTACGACTTTGATCAGGAGAGGAGACCCGGGTGTGGTGGTGGTGGGGATGAGGAGCGCGATTGGGAGAGGCATGGCGGCGCGGTGTCCAGGCCGTCGCCTCACCGGGGCTCGCCGCAGCGGAAGCGCTCTGGTAGTCGGGAGAGGAGCAGCGGCGGCGGCAGCCGTAGAGCGAGCCGATCGCCTGGGCGGCGTGCCGAAGGTGTGTCCCCTGCACCGGCTCCGGCAGGTTCCGGCGGAGGCGGCGGCGGCGGAGAGCGGGTGGTGAGACAGCAGCCGGGGAAGATGGTGTCCGTCCCGGCGAGGGAGAAGGCGCGCGCGCCGTCGCCCGCGGCCGCGTCCGGCAAGAGGTGCGCGTCTCCGAGATCAAGCTCGCCTGCGAGGATGGTGGCTGCAGGGAATGAGAATGCTGGAGGCGGGCAGATGACGGCGGCGCAGACGCCTTCGCTGAGCCGGAGCTCGTCGCCGTACAGGCGCAGCCCCATGGCGGAGATCGACGAGAACTCCCTCCGCAACAACAATGGTGCCAATCACCACAAGAAAATTTCGGAAAACGCGCTCGCCATCGCCGCCGCTCCCCAGAAGGCCACGGAGCGTTCAAAGGAGAAGCCGAAGGTCGTGGAGGAGACGGTCCTCGTTGCGGCGGCGCCGCCCGCGTCTAAGACGACGGCGACGCGCACGGCCAGTGCCACGGCCGAGAGCCTCAACACGAAGGCCCGGTCTCGCCGGGCGTCGCGGGACTTCGACCAGAACACCAACTCGTACGCCACCCAGCTCCTCGAGGACATCCAGAGCTACCACCAGCAGCAGAACACCACCTCCGTGGCCGCCACCGCCGCGACGCTGCCCAGCTTCTCGCTCCCGGCGTGCGTCTCCAAGGCGTGCTCCATCCTCGACGCCGTGGCCGACCTCAACTCCTCGTCGTCGGACAGCCACTCCTGCGAGCCCGACCGCTCCGCCAACGACAGGGGATCGGTCAACGCGCCGCTCGGCGGCGGCATGGACGACCTCGCGGAGCCGGGCGTGCACAAGAGGCACGCCACCGCCCCACGGGGGGACATCCGCGGCGGCGGCGGCGAGACCGAGCCGCAGGAGTCCGCCGGGAGCAACAGCGTCTCCGGCAACCCGTGGACGCCGTCGTGGGAGCCCAACTCGGTGGAGTCCACGGACCGGACGTGGAGCGCGTCGCGCTCGACGAACAACGGCGACGAGGTGGTCGAGCAGGGCAGCAGCAGCCACGCCGGCGCGCGCAGCCCGCTGAACCGCTCCCGGCAGAGCAGCAAGCAGAGGGCGGCGCAGCCGGAGCACAGCGTCCGGTCGCGCGCCGGCAGCTCTGGTGGTAACAGCAACAACGTCGTTCATCGTGGACGCGGTGCTCATCGCAGCGGCGGCGGCGGCGGCGGCAGCGTGGCCAGCGGCCGGTCGGGTGTTCGGGCCGTCTCGGCCATGTCATAG
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| Protein seq | MGLCCSKTQKETTPPHGGAEATTSPQVKRKSGKIAADDKGKKTRAGRAVEAAGDKKAVFVVKTKSGAVNVEERRPVVVVPTMPVRTSSCTKEEVDAILIQCGRLSRSSSGRAASSETGAGHRRSKRSYDFDQERRPGCGGGGDEERDWERHGGAVSRPSPHRGSPQRKRSGSRERSSGGGSRRASRSPGRRAEGVSPAPAPAGSGGGGGGGERVVRQQPGKMVSVPAREKARAPSPAAASGKRCASPRSSSPARMVAAGNENAGGGQMTAAQTPSLSRSSSPYRRSPMAEIDENSLRNNNGANHHKKISENALAIAAAPQKATERSKEKPKVVEETVLVAAAPPASKTTATRTASATAESLNTKARSRRASRDFDQNTNSYATQLLEDIQSYHQQQNTTSVAATAATLPSFSLPACVSKACSILDAVADLNSSSSDSHSCEPDRSANDRGSVNAPLGGGMDDLAEPGVHKRHATAPRGDIRGGGGETEPQESAGSNSVSGNPWTPSWEPNSVESTDRTWSASRSTNNGDEVVEQGSSSHAGARSPLNRSRQSSKQRAAQPEHSVRSRAGSSGGNSNNVVHRGRGAHRSGGGGGGSVASGRSGVRAVSAMS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.064034 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0638200 | RBH | 0.0 | 0.0 | 0.602137 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44640 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0638200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026470 | RBH | 0.0 | 1.227956 | 0.593549 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026580 | RBH | 0.000000 | 1.508029 | 0.149294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026450 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026020 | RBH | 0.0 | 0.283563 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026140 | RBH | 0.0 | 9.438341 | 1.012713 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0416800 | RBH | 4.7719385 | 1.26199 | 2.669625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025940 | RBH | 0.0 | 0.147413 | 0.064968 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0444300 | RBH | 4.4311715 | 0.1787485 | 13.316855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025960 | RBH | 0.0 | 4.241047 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026340 | RBH | 0.0 | 23.539953 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026150 | RBH | 0.0 | 0.223423 | 0.107726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025820 | RBH | 0.0 | 3.713452 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026460 | RBH | 0.0 | 2.276717 | 0.332094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026200 | RBH | 0.0 | 7.042871 | 0.0 |
