Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g42374 | OGI:02072400 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:25491955-25494117 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCGCGAAGGAAGAAGGCCGGAGAAGCGGAAGCGAGAGCGCACGGCGGAGGCGAGGAGGGTTTCATGGAGCCCGAGAAATCCAAAGAGGCGGCGAGCCAGCCGATGGAAGCGGACGCCGGCGGCCCCGTCGATCCCCGAGAACTAGGTAGCTCTCCCAATCCCCCCCTTGCTTTAGATGGCTAAAATCTTTCATGCGAACCCCTTTTGCTTCCTCCTCCAAGAACCGGAAGTATATATAAATCGTGCAGGAAATGGGAGATGCCTGACGTGTCCTGACTGATGCACCTGATTTCCCCTCTTTTGGTTTTGTGTTACCTCTGAATTTGTTAGTGTCCAGCGACGATGAGATAGATTACTCCGTGGAGCCCGAGTTCTACGATCCCGACCTGGATGATGTCGATGAGCGGTGGGTGAGCAAGCAGAGGAAAGGGAGGACTTCTGACGCCGTGCTCAGCTGCCCCGCGTGCTTCACTACCTTGTGCCTGGATTGCCAGAGGTTGTCTTTCCTTACTGCTTCGAACTCTGTGAGGAGGCTTCTGGATTCCAATATGCATGTTTATTAAGCAGTCACTAGTTCTTTTTAGATTAGTCGATTTACTATTTTTAGTTCTTGGATTGGCACGATGCTTTTCCTGATGATGAAGAAACTATCAGGATTGTGGTGCTGCTGCCTGTATAGGGTAGATGCTATCAATAATTTTGTTTGGAGAAGTTGGTGTATGTTAGACCATGAGGAGTATATCTATACATGTGAGCAAATCTTTTGCATACAATCGACATCCATGCTCACAATGATCAAATTGGTTGATTTAAGTGGCTGGAAGAAATAATGGAACTTCTTAATAAATGGTTTATGCTAGGATTAGTTGTTCCTGAATTTTTAGTTTGATTTTGCTTGTATGGGAGAAACGCTCCTGCAAGTGGAAGACATAGCTATTTGTAAACAAGTCAGGGGTGTTTAATTGCTTATCTCTATGATGAAATGGCGACTCTAGGAATACATTAGTGGTATATCGGAGATTTTTGGTTGGCCCATGGGGACATGCCACAATTATTTGTATTAGAGGTTGGACTTACTTTTCAGAAACTTGCAATACATTAATGAACCATTTCAAAAATTTCTGAAGACACCTGAACCACTGCGACAATCTTGCAACATGCTGGAACATTCATGATGACTTATTTGTAACCTGCTTTGTAAATTGAATTATCCACCTTGAAAGTCTGAAATCTTCATGAAACTTACTTTGGTTTGAAACTAAAATAAAACCTGCTTGGAACTTGTGTTGGTAACCATATATTGTGCTTGATCATTTTCCTCTCCAGAATATGCAATTATATCACTTGATTGTACTGAGCATGTCCAATTTTTTAATACAAAATTGAGAAATCTAGATTTGTGGGAAAAAAAATCTGGAGGCAAGTTTATGTGACCTATTTGCAATTCTTTCAGTAATCATTTTATATCGTGAAACATTATGCTGTTGTTTTCATTTGCACAATGTTCAGAAACTCCTGAAGTTCTTACTTTGAATGCTTCAAATCTTCAGACAATTATTAACTGTAGTGGCTTTCTTTGATGTTCAGGCATGAGACGTATGTAAATCAGTACCGTGCAATGTTCGTTCGCAACTGCAAGGTCAAGACTGATCAGATTCTACGGGAGGGGAAAGGCAAACGGAAAAACCGCAAGGGAAAGGCTGCTGATTCTTCTACTACATCAGAAGGTGAAAAGAAGGGTGCAGTTTATCACCCTGTTTGTTGTGAGGTTTGCTCAACTGAGGTTGGAGTGTTTGATGAAGATGAAGTTTACCACTTCTTTAATGTCATTCCTAGCAACTCCTGAAACTTGTTCTTCTGAATGTGTAGTTTGTTGATCCGTAGCCACTGATGAGATCTGTACTTGCTTTGGCGTTCTACTGTTAAATCAATCTACATTCAATTCAGTCAGGTGCATTTGCCATACTTTTTTTTTTCATTTCTGTTGCTAGGAGTTCTTCAGTCTAAAATTATAATTTATAGCTGTATTCTGGTATGGGGCCTGATGAATTTCACCAAGAATGTTGGCAAGTTCCTGGAATATTGGAATTGCAACATTAATTACTTCAATGTGTGTTTTTTTGTGCTGTGCAGAATTGCTGAATAAATTAATGATTCGTGAG
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| CDS seq | ATGGAGCCCGAGAAATCCAAAGAGGCGGCGAGCCAGCCGATGGAAGCGGACGCCGGCGGCCCCGTCGATCCCCGAGAACTAGTGTCCAGCGACGATGAGATAGATTACTCCGTGGAGCCCGAGTTCTACGATCCCGACCTGGATGATGTCGATGAGCGGTGGGTGAGCAAGCAGAGGAAAGGGAGGACTTCTGACGCCGTGCTCAGCTGCCCCGCGTGCTTCACTACCTTGTGCCTGGATTGCCAGAGGCATGAGACGTATGTAAATCAGTACCGTGCAATGTTCGTTCGCAACTGCAAGGTCAAGACTGATCAGATTCTACGGGAGGGGAAAGGCAAACGGAAAAACCGCAAGGGAAAGGCTGCTGATTCTTCTACTACATCAGAAGGTGAAAAGAAGGGTGCAGTTTATCACCCTGTTTGTTGTGAGGTTTGCTCAACTGAGGTTGGAGTGTTTGATGAAGATGAAGTTTACCACTTCTTTAATGTCATTCCTAGCAACTCCTGA
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| Protein seq | MEPEKSKEAASQPMEADAGGPVDPRELVSSDDEIDYSVEPEFYDPDLDDVDERWVSKQRKGRTSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILREGKGKRKNRKGKAADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVIPSNS |
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| Function | E2F-associated phosphoprotein [UniProtKB/Swiss-Prot:Q5BU09] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42374 | LOC_Os02g42374.1 | Chr02 | 25491956 | 25494117 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGCCCGAGAAATCCAAAGAGGCGGCGAGCCAGCCGATGGAAGCGGACGCCGGCGGCCCCGTCGATCCCCGAGAACTAGTGTCCAGCGACGATGAGATAGATTACTCCGTGGAGCCCGAGTTCTACGATCCCGACCTGGATGATGTCGATGAGCGGTGGGTGAGCAAGCAGAGGAAAGGGAGGACTTCTGACGCCGTGCTCAGCTGCCCCGCGTGCTTCACTACCTTGTGCCTGGATTGCCAGAGGCATGAGACGTATGTAAATCAGTACCGTGCAATGTTCGTTCGCAACTGCAAGGTCAAGACTGATCAGATTCTACGGGAGGGGAAAGGCAAACGGAAAAACCGCAAGGGAAAGGCTGCTGATTCTTCTACTACATCAGAAGGTGAAAAGAAGGGTGCAGTTTATCACCCTGTTTGTTGTGAGGTTTGCTCAACTGAGGTTGGAGTGTTTGATGAAGATGAAGTTTACCACTTCTTTAATGTCATTCCTAGCAACTCCTGA
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| Protein seq | MEPEKSKEAASQPMEADAGGPVDPRELVSSDDEIDYSVEPEFYDPDLDDVDERWVSKQRKGRTSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILREGKGKRKNRKGKAADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVIPSNS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42374 | LOC_Os02g42374.2 | Chr02 | 25491956 | 25494062 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGCCCGAGAAATCCAAAGAGGCGGCGAGCCAGCCGATGGAAGCGGACGCCGGCGGCCCCGTCGATCCCCGAGAACTAGTGTCCAGCGACGATGAGATAGATTACTCCGTGGAGCCCGAGTTCTACGATCCCGACCTGGATGATGTCGATGAGCGGTGGGTGAGCAAGCAGAGGAAAGGGAGGACTTCTGACGCCGTGCTCAGCTGCCCCGCGTGCTTCACTACCTTGTGCCTGGATTGCCAGAGGCATGAGACGTATGTAAATCAGTACCGTGCAATGTTCGTTCGCAACTGCAAGGTCAAGACTGATCAGATTCTACGGGAGGGGAAAGGCAAACGGAAAAACCGCAAGGGAAAGGCTGCTGATTCTTCTACTACATCAGAAGGTGAAAAGAAGGGTGCAGTTTATCACCCTGTTTGTTGTGAGTTTGTTGATCCGTAG
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| Protein seq | MEPEKSKEAASQPMEADAGGPVDPRELVSSDDEIDYSVEPEFYDPDLDDVDERWVSKQRKGRTSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILREGKGKRKNRKGKAADSSTTSEGEKKGAVYHPVCCEFVDP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42374 | LOC_Os02g42374.3 | Chr02 | 25493119 | 25494117 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTCAGGCATGAGACGTATGTAAATCAGTACCGTGCAATGTTCGTTCGCAACTGCAAGGTCAAGACTGATCAGATTCTACGGGAGGGGAAAGGCAAACGGAAAAACCGCAAGGGAAAGGCTGCTGATTCTTCTACTACATCAGAAGGTGAAAAGAAGGGTGCAGTTTATCACCCTGTTTGTTGTGAGGTTTGCTCAACTGAGGTTGGAGTGTTTGATGAAGATGAAGTTTACCACTTCTTTAATGTCATTCCTAGCAACTCCTGA
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| Protein seq | MFRHETYVNQYRAMFVRNCKVKTDQILREGKGKRKNRKGKAADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVIPSNS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42374 | LOC_Os02g42374.4 | Chr02 | 25491974 | 25494117 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTCGTTCGCAACTGCAAGGTCAAGACTGATCAGATTCTACGGGAGGGGAAAGGCAAACGGAAAAACCGCAAGGGAAAGGCTGCTGATTCTTCTACTACATCAGAAGGTGAAAAGAAGGGTGCAGTTTATCACCCTGTTTGTTGTGAGGTTTGCTCAACTGAGGTTGGAGTGTTTGATGAAGATGAAGTTTACCACTTCTTTAATGTCATTCCTAGCAACTCCTGA
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| Protein seq | MFVRNCKVKTDQILREGKGKRKNRKGKAADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVIPSNS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42374 | LOC_Os02g42374.5 | Chr02 | 25491955 | 25494117 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTCGTTCGCAACTGCAAGGTCAAGACTGATCAGATTCTACGGGAGGGGAAAGGCAAACGGAAAAACCGCAAGGGAAAGGCTGCTGATTCTTCTACTACATCAGAAGGTGAAAAGAAGGGTGCAGTTTATCACCCTGTTTGTTGTGAGGTTTGCTCAACTGAGGTTGGAGTGTTTGATGAAGATGAAGTTTACCACTTCTTTAATGTCATTCCTAGCAACTCCTGA
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| Protein seq | MFVRNCKVKTDQILREGKGKRKNRKGKAADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVIPSNS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.281831 | 0.910857 | 0.293192 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0635700 | RBH | 0.310957 | 1.352207 | 1.595500 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0635700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026350 | RBH | 0.193282 | 5.881457 | 0.719057 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026320 | RBH | 0.709797 | 2.501227 | 3.719650 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025890 | RBH | 0.080855 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026000 | RBH | 1.151634 | 0.0 | 6.730821 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0414700 | RBH | 2.8464975 | 4.2134605 | 3.5597995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0442900 | RBH | 2.0651085 | 0.8342395 | 6.221869 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026210 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
