Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g42320 | OGI:02072300 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:25454224-25458627 | ||||||||
| Gene Symbol | PAB2, OsPAB2 | ||||||||||
| DNA seq | TCTTTCTCTCTCTCCTCTTCTTCCTTGGCGAGTTGTGCTCTGCCTCCCTCTCCCTTCCCACGCCGTCTCGCCGCAATCGCTCGCTCGGTCGCCTCCTCTTCCGCCGCGAGACACGAAGAGCAGCAGCTCACAGGTAGGCCTGCGCGTCGGCGGCCATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGGTATGTGCTGCCTTGCGCCTCCCTCGCCCGGAGATCGGGCGTGATCTGGTGCGGTTTCGGTTTCGTCATCTGTGGTTTTTGTGGCGATTTCGTTTGCAGCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGGTGCGTCCCGTGAAGCAATCCCTTCTCTATACTTCTATTGCGTTATGAGAATCGAGAAGGGGAGGGGAGGTTTGAGATTTTGGCTGGTTCGGTTCACATGACGAAGTGGCGCTTGTTGGGGATTTTGCACTTTTCGCATAACTTTAGGTCGTTGCAGAGCTTTTATTTGTTCTGGAGACCTGGAGTGTGAAGTTTGCTACGGCTTAGGTTACTAATAGGTGCCATGTTACTTGCATCTGCTATTCTGCTTTAGTGATACTTGGGAATTTTGTAATGTTTGCTTCGTTTTCGCTTACAAATGCTTGTGGATTCCATGGAAAATCATTATTAATCTACATAAATGTATGTCTTGTAACAGCAATGGCAAGTGCTCCCCTTTATAACCACATAAGAAATACAAGCTGCTTGGTTTCATCTGTGATGATGAAGTTTTCTATGCCAATTTACGGCGTTGAATGTATATGCTGACCTAGTTTTCCCATTAGTAGTTGTATGTGTGTGCAGTCTGATCTAGTGCCTATTAGGGTTTGGAAGCCCATTTTAGTATCAGTGCAAAATTCTAATTTGTTTGCCCTGTCAACGTCCACCTTACTGGTAGGTTTACATACCCTTAAAATCAGCTTTTGTTGCCACTTGTCAGTATTTATGCAATTTAAAGTCTTGGGGTTTTAGCCCATGAATTTTGTTTTGGTGTATGAAAAATTGAAAGAAACTATTTGACATGCGTTCTTCACGCTGATAGATGTAATTGTTGTATGTAATAAATTTGTGGTGTAGAACATACTGCATATGTTTTTACCAGATTGTTCTATCATATGTTTTTGTGTAGTTACTGCTCAGAGACTACAGTCTGTTGATTCTCTTCAGTTCCCTTTTAGCCTAGTTTATTGATTCTGAGGTATATTTGTTATGTTTGCAGCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTGTAAGTCTAACATCACTCTTAATGCTGAATTCCTCTTTTAGTGAGTTGCGACATGCTATTCGTTGTTTGTTTCTCAGAAGCACTAATACATAGTTATATGCAAATTCAGGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGGTAACCTTTTACATTGGCTTCATTGTTGGAATACATTTCTATTTTGTATATATTATGGTTGTCATGTACATGCTATTGTGAGTTATTCCAACTTGTTATTCTATTAGTTATGTTCTTGATCCTTTATATGAGCACTAGCTGTGCTGTAAGCTTCTACAATTTTAGCAGTACATAGTTCACAGATGAGCTATTGTGTAAGAATATAATGGTAATATAAATAATTGGTTTGAACCGCCTGGTTTTAGTGAACAAGTGACACAGTTCGCCCTGAGAAATTTGCACATATTAATCTTCCCTAAAAAGGCACAAATTAAAAATATCTATCTTGCTCTCCAAACTTTGCAAGAGGATAAGTGCATTGGTATTTTACTGTGTCTTATAGTTATATGCACATCAGATTGCAGTAACTTTGGAAATCCATATCTAGACATTTGAGGCAACTTGGTGAATGAGCATGCAGATCTCTGGATTTTTGTTGATTAGCTTGTAAGGTATTTATAGTTTATCTATTCACTGGACTAAAGCATAAAAAATAGTTCTTCAATCCATCTGCAGCCTTGTACAGTGGTCTGAGAGAACAGCTGCATTCTGTCTTTAAATTATTTGTTAGTTTGTTACATCTCTCAGCTTGCTGCTGTTAATATCAGTTGCAATTCAATAATACATGTTTACTTACCTGTGCACTTCTTTCAGTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGGTGGTTTTTTACAGTTCATTTGATTTATACTTCAGATAACTATTGTATGTTTTGTAAAGACATATATTTTTCAATAAATTGCTATTTCGGATAGCATGCAATTTTTCATGTACGACAGTCATGATCTTTTCCATCATTTACTTATTTCTCATGATTGTTCTTCCTTTTTCTAATGCAGGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGGTATGCTACTTCAGAGTTTTCCATTTCTATCAATGATATTGTTAAATAATATATTCTTGCACTTGTTCGACCTAATTAATTTGTATGGATATATTTGTGGGATATTTTTACTATAACTTAACAGTACCATTCATTCAATATTGTATTCGATAATTCAGATGTTCAGTACCGAAAACTTTCAACATGTACATCACATTGATGTGTGTTGATGCAGAAGCTTGTTAATTGACCTGCTGGGAAGAATATATATGATCTGCTGTGTGAACTTCCACTTGGATTTTCACTGGATGGATAAAATTTTATTGAAATTGGGCCATTGAGAATTAAATTGCTAATGTAACCAAGCAAGTTGGGTAGTTTCATACCTGTAACACATAGGATTTTCCAGTCATTTGCATTTTATAATTCACTTTGACATCATTGAAACAAAAAAGAAAAAAAAACATCAGAGGAATAATTAAGACATACATCTTGTTATAAATCACATTACATGCTATGTGGTAGTTGGTTCTTATGTTGATTGGTGAATCCTGAAGTACAGTTCACTCCTTAAAGATATGAATATATGATGTAACCGAATTTCTGAGGCATGACTCACGGCCAACTTGTTTGTTGCAGTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTATGCAGATAGCTGCGTGATAGGGGCTCTTTTTTGTTGCAACTGTTTCAAAATTAATGTGTACGTTGACCCTTGTCTCAATAATAAGCTGCAAAGTGTTGTTTGCACAAAGCATCTAATAGCAGATCACCACTATTAGTTGTGCTAGTTTTGTTCTTCTGGACTGAAATTTTACCTGTCAATTTGTCATATTTTGTTATGGTGTAAAATTGGTATAATGCCAGATGTGCTGTATTATTTCTACAGGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGGTACATAGCATACCACTAATATTGTATTGTACTACACTCTGTTTTCCTCAATCTGATCAGAAATAAAGTGGATTTGTTTACGAGGATATCTTCTTTCCAAAGTTGTATGACTGCACTTGTACTGTTGTTCAACCTCTTTATGTCCTCATTTCAGATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGGTATGTCTTGTAGGTGCTTCTGTTTCTATTTCCGGAACATCCTTACTGAGTTACTGACTGATTCGGGGGTTGCAGATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAGTATGTCATACAGACTTGATCAAGCTGTTTTTTACTGCCACGTATATGCAATGCAACTTCTGTCTTGTGAACATGCCATAACAAGTTACTGACAAGTTACTTTCTGTACAAAATGCAGAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTACTGTTCTAAGTGACACTCTTGAGCCGTAGTCATGAGGCTTCTTGTCTCTTACCATTTGTCACTTAAACCTATTGTAAACTGATTTGCTTCAGTGATATGCATGAGATGAAGTGGTGGACCTACTTTTGAATCCCCATCGTAAACAAGATATTGTTGGGTGAATGTTGTATTTGGTTCTCTTCTAAGGAGGTATTTGGCGCATATATTGTGTCTCCTCCCGACATATCATTTGCCCTGACAGTACTTGTGAAACAGTCAAAACAGATCACGAAGGAATATCTTGGTTGAGTTTGCATCCGTAAAACA
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| CDS seq | ATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGGTATGTGCTGCCTTGCGCCTCCCTCGCCCGGAGATCGGGCGTGATCTGGTGCGGTTTCGGTTTCGTCATCTGTGGTTTTTGTGGCGATTTCGTTTGCAGCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAA
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| Protein seq | MGDSQYSFSLTTFRYVLPCASLARRSGVIWCGFGFVICGFCGDFVCSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEVE |
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| Function | Proteasome subunit alpha type-2 [UniProtKB/Swiss-Prot:Q10KF0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42320 | LOC_Os02g42320.1 | Chr02 | 25454224 | 25458627 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTATTCGTTGTTTGTTTCTCAGAAGCACTAATACATAGTTATATGCAAATTCAGGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAA
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| Protein seq | MLFVVCFSEALIHSYMQIQVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEVE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42320 | LOC_Os02g42320.2 | Chr02 | 25454224 | 25458627 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAA
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| Protein seq | MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEVE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42320 | LOC_Os02g42320.3 | Chr02 | 25454224 | 25458627 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGGTATGTGCTGCCTTGCGCCTCCCTCGCCCGGAGATCGGGCGTGATCTGGTGCGGTTTCGGTTTCGTCATCTGTGGTTTTTGTGGCGATTTCGTTTGCAGCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAA
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| Protein seq | MGDSQYSFSLTTFRYVLPCASLARRSGVIWCGFGFVICGFCGDFVCSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEVE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g42320 | LOC_Os02g42320.4 | Chr02 | 25454224 | 25458215 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGAGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTATGCAGATAG
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| Protein seq | MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVCR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.881506 | 4.445937 | 6.351449 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0634900 | RBH | 6.901656 | 7.530679 | 28.708891 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g26970 | RBH | 2.504570 | 2.087818 | 2.769256 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0634900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026300 | RBH | 3.627262 | 66.938774 | 21.765020 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026420 | RBH | 0.870726 | 14.513952 | 8.637560 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026270 | RBH | 5.644819 | 66.699020 | 24.879793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025840 | RBH | 0.912337 | 1.955611 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025950 | RBH | 20.997780 | 88.999229 | 38.119614 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0414100 | RBH | 20.445763 | 43.394117 | 44.913061 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025770 | RBH | 1.514741 | 4.927647 | 3.208210 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0442700 | RBH | 23.078556 | 51.7462385 | 51.033321 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026130 | RBH | 1.157289 | 1.154552 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025810 | RBH | 2.384165 | 67.132919 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026170 | RBH | 19.211834 | 116.803627 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026000 | RBH | 1.911596 | 6.813661 | 3.338691 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025640 | RBH | 0.352514 | 41.727959 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026280 | RBH | 1.589746 | 19.721920 | 9.606116 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026030 | RBH | 2.511720 | 82.388519 | 24.440863 |
