Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g41940 | OGI:02071440 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:25197094-25198731 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATCGTTGATCGGCGTCTTGTTGGAGGAACCGGAGCACCTCCTCGGGCGGCGCGGCGCGCCACACCCGCGGGCGCACCGCCTTGTGTCCGAGCCTGGCGAAGCCGTGCGCCACCTTGTTCCCGCTGCGGTACACGTGTGACACGGCCATGTCATCGATCAGCGGGAGCAGCGCGGCGATCTCCCTGCACTGTCTCAGGTCCTCCTCCGACCGCACGTTGGCGCGGTCGCACACCACGTCGACCACCGTCTTGGAGTCGCCCTCCGCCCAGACGCGCCGCCACCCGTTCCGCACCACCAGCTCGAGGCCGCGCCTGAGCGCCGCGAGCTCCGCGACGGAGCTCGTCGCTCTGCCGATCCGCTCCGCGTAGCCGAGCACGAATGCGCCCTCGTGGTCGCGGTACACGCCGCCGATGCTCGCGATCTTGGTCGCGTGCTTAGACGACCCATCGAAGTTGAGCTTTATCCACCCGGCTTCCGGCTTTCTCCATGTCCTCGCGGATGAAGATGAGTCGGCCTGTATGTTCCGCCGCTGCCCTCCGCCGCCGCCGCCGGCAAGGCTACATGCCAATACAGGGCAGGGCAGCCGTAGCATGCCAAGACCAGGGCGGTGCATGCGAAGCATATCCACTCACTGAAAAATGCGCGACTTTTACGTTTATTTCGCGTCACACTACTTAGATGTATAATTTGAGAGGAACTAGGTGATGGGAATTGGACAAGCAAAAAACTGTCGATTTGAATAGGTTTTATAATTAAGAGCGAGATGGAGCTACGCGAATGCCATTGATTCAGCACGCAATCTGCCAAGAAAGGCGAGGTATTTGTGCCTGCCTTCTTCCCATGAATTGCCCAAGGAGAAGCAACCGTTCGTTGCTTGCTGCTTCAAATTAGTGAACGCTTTGCTGTAAAAAGATAGTGAAAATAGCGAATGCTTCTGCTTTAGGGCTCCTAGAGCTGGCGTGGTTGAAGCTGGCGTGAAGATAGTGAAAATAGCGAATGCTCCATGATCTCCATGCTTGTGGCGTGGTTGAATCTCGTTGCCTCGTGTTGACTGTTTGTGAATATTCGGCGGATAAAATAAGGATAACTGCCATGTGAAATTTCCGTTTCTATTTGATAGAATTTTTCCCATGGCTATGTTTAGCACGTTGGACTATTTGAGATGGCCTGCTAAATGTATTGGAAACCCCTACTGCAGAATTCACCATGGGTCTCATTCAAGCTGTGTTTATGATTCGTACGCAAAAACTCAAGCGACGTTATTTCATCGCCAATTCCAATGGTGTTTATTCGATGGACATTTTGCTAGGAAAAAAATACACCGAAGGTCCCCTAACCTGTCATAGAATTACAAAATCGTCCCCAACCGTAAAACCGGATACAACGCATCCTCTAACTTACATAACCAGTGCAAACTAGATCTTTCGGCGGTTTTGACCGACGTGACAGCTGACTTAGCGTGGGACCCACGTGGGTCCCACATGTCAGCCTCTACTTCCCCTCATCTCTCCACCTCTCTTCCTCTCTCCTCCCCTTTCCACGGGTGACGAGTACGGTGGGTGCGGAAGAGCTGGGCGGCGCCGGCGGTGGGGAGGAACTGGGCGGTGCCGGCGGGGAGGAGCTGCTCTAGCTGCAT
More
|
||||||||||
| CDS seq | ATGCAGCTAGAGCAGCTCCTCCCCGCCGGCACCGCCCAGTTCCTCCCCACCGCCGGCGCCGCCCAGCTCTTCCGCACCCACCGTACTCGTCACCCCCTTGCCGGCGGCGGCGGCGGAGGGCAGCGGCGGAACATACAGGCCGACTCATCTTCATCCGCGAGGACATGGAGAAAGCCGGAAGCCGGGTGGATAAAGCTCAACTTCGATGGGTCGTCTAAGCACGCGACCAAGATCGCGAGCATCGGCGGCGTGTACCGCGACCACGAGGGCGCATTCGTGCTCGGCTACGCGGAGCGGATCGGCAGAGCGACGAGCTCCGTCGCGGAGCTCGCGGCGCTCAGGCGCGGCCTCGAGCTGGTGGTGCGGAACGGGTGGCGGCGCGTCTGGGCGGAGGGCGACTCCAAGACGGTGGTCGACGTGGTGTGCGACCGCGCCAACGTGCGGTCGGAGGAGGACCTGAGACAGTGCAGGGAGATCGCCGCGCTGCTCCCGCTGATCGATGACATGGCCGTGTCACACGTGTACCGCAGCGGGAACAAGGTGGCGCACGGCTTCGCCAGGCTCGGACACAAGGCGGTGCGCCCGCGGGTGTGGCGCGCCGCGCCGCCCGAGGAGGTGCTCCGGTTCCTCCAACAAGACGCCGATCAACGATAA
More
|
||||||||||
| Protein seq | MQLEQLLPAGTAQFLPTAGAAQLFRTHRTRHPLAGGGGGGQRRNIQADSSSSARTWRKPEAGWIKLNFDGSSKHATKIASIGGVYRDHEGAFVLGYAERIGRATSSVAELAALRRGLELVVRNGWRRVWAEGDSKTVVDVVCDRANVRSEEDLRQCREIAALLPLIDDMAVSHVYRSGNKVAHGFARLGHKAVRPRVWRAAPPEEVLRFLQQDADQR |
||||||||||
| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g41940 | LOC_Os02g41940.1 | Chr02 | 25197094 | 25198731 | - | MSU_osa1r7 | ||
| CDS seq | ATGCAGCTAGAGCAGCTCCTCCCCGCCGGCACCGCCCAGTTCCTCCCCACCGCCGGCGCCGCCCAGCTCTTCCGCACCCACCGTACTCGTCACCCCCTTGCCGGCGGCGGCGGCGGAGGGCAGCGGCGGAACATACAGGCCGACTCATCTTCATCCGCGAGGACATGGAGAAAGCCGGAAGCCGGGTGGATAAAGCTCAACTTCGATGGGTCGTCTAAGCACGCGACCAAGATCGCGAGCATCGGCGGCGTGTACCGCGACCACGAGGGCGCATTCGTGCTCGGCTACGCGGAGCGGATCGGCAGAGCGACGAGCTCCGTCGCGGAGCTCGCGGCGCTCAGGCGCGGCCTCGAGCTGGTGGTGCGGAACGGGTGGCGGCGCGTCTGGGCGGAGGGCGACTCCAAGACGGTGGTCGACGTGGTGTGCGACCGCGCCAACGTGCGGTCGGAGGAGGACCTGAGACAGTGCAGGGAGATCGCCGCGCTGCTCCCGCTGATCGATGACATGGCCGTGTCACACGTGTACCGCAGCGGGAACAAGGTGGCGCACGGCTTCGCCAGGCTCGGACACAAGGCGGTGCGCCCGCGGGTGTGGCGCGCCGCGCCGCCCGAGGAGGTGCTCCGGTTCCTCCAACAAGACGCCGATCAACGATAA
More
|
|||||||
| Protein seq | MQLEQLLPAGTAQFLPTAGAAQLFRTHRTRHPLAGGGGGGQRRNIQADSSSSARTWRKPEAGWIKLNFDGSSKHATKIASIGGVYRDHEGAFVLGYAERIGRATSSVAELAALRRGLELVVRNGWRRVWAEGDSKTVVDVVCDRANVRSEEDLRQCREIAALLPLIDDMAVSHVYRSGNKVAHGFARLGHKAVRPRVWRAAPPEEVLRFLQQDADQR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0630250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47740 | SBH | 0.000000 | 0.0 | 0.080197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0630250 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026010 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025970 | RBH | 0.0 | 0.0 | 0.590256 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025650 | RBH | 0.0 | 0.0 | 0.543531 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0409300 | RBH | 0.0456065 | 0.1005855 | 0.2043395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0438100 | RBH | 0.209728 | 0.057942 | 0.0586285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025950 | RBH | 0.0 | 0.0 | 0.568658 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025780 | RBH | 0.0 | 0.0 | 0.0 |
