Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g41750 | OGI:02071130 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:25101145-25102301 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTTCGGGGCGTGACAAATAACCTCATTTTCTTTGTACTCCCATCTCACACTATCCTCTTCAGAGACGACCAGACCAGAAAAATCCTCACTAGCCCATTCTGCTGGATTAATATCCGTCTCATCATCTGACGAATCACCTTCCTCTACACGCTCGTTGTCAGAATCCTCCCTCTCCATTTCATCCACAATGGCACCGACAGTCTCCCCCTCGTCGGCCACTCCACCTAGTTGAATGCCCACTGGAGCTACTACGCCCCCGTCCTCTTGTGCGTTGACATCTTTCACAGAAGTCTCATTTACTTCAGCAATTGGTCCCTCGCCATCATCCATGTTCATCTGCACACCTGGATCCTTCTGGTGAACAAACGGAACCATAGCTAGAGGCCACCCGCGTTGCAATGCATTTTCCACATACAATCTCCACACTCGAGAGTTTTGAACTGGCATTAGTTCCCAATAAAAACCCTCAGTTGCCCGACTTACTATAACATTGATTGTTATGTCACTTATCTGTGGATCAACTCTCAAGCCCCTCATTAACCATCCTTTTATAGAAGGTACACTCCTCTCAGCCGGTCTATCAATTCCCCATTCTGATACAATAAATTCTGATAGATCTACCCCAGTTGGCCCGTAACGAACGTTTCCTGGGCCATGGGGTAAACTTGGAATATTTGTTTGTTCGACATATCTGTCAACGAAATAACTAGATCATATTACTCTTTCATGCAATAAAAATCTACAACATAATATCTTCTTGTGTATGCCAATGCAACGGTAAAGTACTGATTCCAAACTAGCAGATCTATATAGTTACCGATATCTACAATACGCACTTCTAGATTAGTATAACTAAAACCCTAAAAATATAATGCATTTATTCGAACAAAGTTTTTAAAAAATACACAGTATTTAACTCAATAGTCACATATAGGATCTATGAATATTACCTGAAATCGGCGTCTGAATCTGGCAGGGCTTCGCCCCTTCTCTTTTCCTCCCCTTTCTTCTTTTTTTTACTGGATTTGTGGGGGAGGAATGAGGGCTGGGGGCTGGGCGGCAGGCCTTTTATAGGCCGTGAGGCCTGCCGCCCGGCCAGAGGGCAGCAAGGGGCCGCCTGCAAAATGGCCGGTCTCGGCTGGCTTTTTTTGCAT
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| CDS seq | ATGCAAAAAAAGCCAGCCGAGACCGGCCATTTTGCAGGCGGCCCCTTGCTGCCCTCTGGCCGGGCGGCAGGCCTCACGGCCTATAAAAGGCCTGCCGCCCAGCCCCCAGCCCTCATTCCTCCCCCACAAATCCAATATGTCGAACAAACAAATATTCCAAGTTTACCCCATGGCCCAGGAAACGTTCGTTACGGGCCAACTGGGGTAGATCTATCAGAATTTATTGTATCAGAATGGGGAATTGATAGACCGGCTGAGAGGAGTGTACCTTCTATAAAAGGATGGTTAATGAGGGGCTTGAGAGTTGATCCACAGATAAGTGACATAACAATCAATGTTATAGTAAGTCGGGCAACTGAGGGTTTTTATTGGGAACTAATGCCAGTTCAAAACTCTCGAGTGTGGAGATTGTATGTGGAAAATGCATTGCAACGCGGGTGGCCTCTAGCTATGGTTCCGTTTGTTCACCAGAAGGATCCAGGTGTGCAGATGAACATGGATGATGGCGAGGGACCAATTGCTGAAGTAAATGAGACTTCTGTGAAAGATGTCAACGCACAAGAGGACGGGGGCGTAGTAGCTCCAGTGGGCATTCAACTAGGTGGAGTGGCCGACGAGGGGGAGACTGTCGGTGCCATTGTGGATGAAATGGAGAGGGAGGATTCTGACAACGAGCGTGTAGAGGAAGGTGATTCGTCAGATGATGAGACGGATATTAATCCAGCAGAATGGGCTAGTGAGGATTTTTCTGGTCTGGTCGTCTCTGAAGAGGATAGTGTGAGATGGGAGTACAAAGAAAATGAGGTTATTTGTCACGCCCCGAACTAG
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| Protein seq | MQKKPAETGHFAGGPLLPSGRAAGLTAYKRPAAQPPALIPPPQIQYVEQTNIPSLPHGPGNVRYGPTGVDLSEFIVSEWGIDRPAERSVPSIKGWLMRGLRVDPQISDITINVIVSRATEGFYWELMPVQNSRVWRLYVENALQRGWPLAMVPFVHQKDPGVQMNMDDGEGPIAEVNETSVKDVNAQEDGGVVAPVGIQLGGVADEGETVGAIVDEMEREDSDNERVEEGDSSDDETDINPAEWASEDFSGLVVSEEDSVRWEYKENEVICHAPN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g41750 | LOC_Os02g41750.1 | Chr02 | 25101145 | 25102301 | - | MSU_osa1r7 | ||
| CDS seq | ATGCAAAAAAAGCCAGCCGAGACCGGCCATTTTGCAGGCGGCCCCTTGCTGCCCTCTGGCCGGGCGGCAGGCCTCACGGCCTATAAAAGGCCTGCCGCCCAGCCCCCAGCCCTCATTCCTCCCCCACAAATCCAATATGTCGAACAAACAAATATTCCAAGTTTACCCCATGGCCCAGGAAACGTTCGTTACGGGCCAACTGGGGTAGATCTATCAGAATTTATTGTATCAGAATGGGGAATTGATAGACCGGCTGAGAGGAGTGTACCTTCTATAAAAGGATGGTTAATGAGGGGCTTGAGAGTTGATCCACAGATAAGTGACATAACAATCAATGTTATAGTAAGTCGGGCAACTGAGGGTTTTTATTGGGAACTAATGCCAGTTCAAAACTCTCGAGTGTGGAGATTGTATGTGGAAAATGCATTGCAACGCGGGTGGCCTCTAGCTATGGTTCCGTTTGTTCACCAGAAGGATCCAGGTGTGCAGATGAACATGGATGATGGCGAGGGACCAATTGCTGAAGTAAATGAGACTTCTGTGAAAGATGTCAACGCACAAGAGGACGGGGGCGTAGTAGCTCCAGTGGGCATTCAACTAGGTGGAGTGGCCGACGAGGGGGAGACTGTCGGTGCCATTGTGGATGAAATGGAGAGGGAGGATTCTGACAACGAGCGTGTAGAGGAAGGTGATTCGTCAGATGATGAGACGGATATTAATCCAGCAGAATGGGCTAGTGAGGATTTTTCTGGTCTGGTCGTCTCTGAAGAGGATAGTGTGAGATGGGAGTACAAAGAAAATGAGGTTATTTGTCACGCCCCGAACTAG
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| Protein seq | MQKKPAETGHFAGGPLLPSGRAAGLTAYKRPAAQPPALIPPPQIQYVEQTNIPSLPHGPGNVRYGPTGVDLSEFIVSEWGIDRPAERSVPSIKGWLMRGLRVDPQISDITINVIVSRATEGFYWELMPVQNSRVWRLYVENALQRGWPLAMVPFVHQKDPGVQMNMDDGEGPIAEVNETSVKDVNAQEDGGVVAPVGIQLGGVADEGETVGAIVDEMEREDSDNERVEEGDSSDDETDINPAEWASEDFSGLVVSEEDSVRWEYKENEVICHAPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017890 | SBH | 0.097468 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017820 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0541200 | SBH | 0.1639175 | 0.007534 | 0.044902 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0422700 | RBH | 0.2073955 | 1.1024985 | 0.0117615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018120 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017680 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018000 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
