Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g39250 | OGI:02067580 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:23707611-23709190 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTTTGCGAGCATGTTCCAGATTCTTCTCATGTATCTGCAGACCACGAGGAGGTGGAAAGCAGTCTCCAATTCGTGTCTGCAGAGCAGTCAATAAGTGTTGTTTGGACATCCTTAATCGGAGATGGATTCTAATTAATAGCTTGAGTGGACGTCCACCCGTTTAGATGGTTACGAAAAATTTTCAAAAAATTGACAAGATAGATCAATATGTAATATATCACTCCATAAACATGCAAGTTCAAATTCAACTTCTAAAAGTTGTAACAAAAATAACAAATTTAATTGTAAATATACATATAGTAATTTGAGTTTTGTTTGTTATGTTTGTTACAATTTGTAGAAGTTGAATTTCAACTTGCATATTTGTGGATTGATATATTACATATTGATCTATCTTGTTCATATTTTTTCATTTTTTTCATAACCATTTAGATGACATGCAATAAATGGGTGGACGCCCACTCGAGCTGTTAAACAGTTTCCCATCCTTAATCACTAATTTTCTAATGTCCAGTCCCTATTGTGGATCACAAGCTAGGTGAACAACTTACATTTGTTTGGTGCCTACGCTTTCCGGATGATTGTACACCAGGTATGGACTATAGCGGGAATCCAGCTGGCTGACTTTATGTGCCCTTGCAACATCTAGTTTGCGAGCATGTTCCAGATTCTTCTCATGTATCTGCAGTCCACGAGGAGGTGGAAAGCAGTCTCCAATTCGTGTCTGCAGAGCAGGCAGTAAGTGTTGTTTGGACATCCTTGAATCACTAGTTTGTCTAATATCCAGTCCCTATTACGGATCACAAGCCGAGCGAACAACTTACATTTGTTTCGTGCCCATGGTTTCCAAATGATTATGTCATAGTTTGTGCTAGTGGATTCAAGGAACTACTCTTTTTAGGTGGAACCGAGTATTCTTCATGATTTGTGAGCCTCCAAATGATTTCATCTACAACACCTGGGGAGAGTTGCACGCTTTGAACTGTTGTCCACAAGGTCACTAGTTGCTCTAGAAGCTTAGTTGACATGTCTCCGATGATTGAGAGATTTAGGTCTTGCGACCAGGTATTGTCTGTGATGGTATCCCTCAAGGTTCTATTCTTCCCTTTGGAGATTGTGTACACTTGTGGCATGACATCCTTCGGGTGGCGACCGTGCATCCAGGCTAAGTCCCAAAAATGTGATGTTGCTCCGTCCCCAATGGTTATCATTGTAGTTGACAAGAGTATTTTATCGGTTTCGTCGCACAGGGTATCCAAGCCGACCCATGCTTTGTCCAGGGATTTCCATTCATACCATAGCCATCTGACATGTAGTGCTAGTGCAAAGCTTTCTAGATTTAGCACGCCCAGGCTGCCGTAGGCAGTTGGCGAGCACATTATACTTTGCATTTCCCGCTCGTTATGTTTTCCTAACCCACCCATAGGAAGCTCTTTCATTGTTTGTCAAGCACTTTATAGGGATACCTTGGTAAATTTAAGCGTTATTAGGACATAGATTGGCTGCAAGGAAAGCACTTACTTGACTTGAGTGGTGCGTCTAGCTAGCCCCATGTTTCTTTCCCACCAAACAGCCAT
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| CDS seq | ATGGCTGTTTGGTGGGAAAGAAACATGGGGCTAGCTAGACGCACCACTCAAGTCAACCTGGGCGTGCTAAATCTAGAAAGCTTTGCACTAGCACTACATGTCAGATGGCTATGGTATGAATGGAAATCCCTGGACAAAGCATGGGTCGGCTTGGATACCCTGTGCGACGAAACCGATAAAATACTCTTGTCAACTACAATGATAACCATTGGGGACGGAGCAACATCACATTTTTGGGACTTAGCCTGGATGCACGGTCGCCACCCGAAGGATGTCATGCCACAAGTGTACACAATCTCCAAAGGGAAGAATAGAACCTTGAGGGATACCATCACAGACAATACCTGGTCGCAAGACCTAAATCTCTCAATCATCGGAGACATGTCAACTAAGCTTCTAGAGCAACTAGTGACCTTGTGGACAACAGTTCAAAGCGTGCAACTCTCCCCAGGTGTTGTAGATGAAATCATTTGGAGGCTCACAAATCATGAAGAATACTCGGGACTGGATATTAGACAAACTAGTGATTCAAGGATGTCCAAACAACACTTACTGCCTGCTCTGCAGACACGAATTGGAGACTGCTTTCCACCTCCTCGTGGACTGCAGATACATGAGAAGAATCTGGAACATGCTCGCAAACTAGATGTTGCAAGGGCACATAAAGTCAGCCAGCTGGATTCCCGCTATAGTCCATACCTGGTGTACAATCATCCGGAAAGCGTAGGCACCAAACAAATACACGAATTGGAGACTGCTTTCCACCTCCTCGTGGTCTGCAGATACATGAGAAGAATCTGGAACATGCTCGCAAACTAG
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| Protein seq | MAVWWERNMGLARRTTQVNLGVLNLESFALALHVRWLWYEWKSLDKAWVGLDTLCDETDKILLSTTMITIGDGATSHFWDLAWMHGRHPKDVMPQVYTISKGKNRTLRDTITDNTWSQDLNLSIIGDMSTKLLEQLVTLWTTVQSVQLSPGVVDEIIWRLTNHEEYSGLDIRQTSDSRMSKQHLLPALQTRIGDCFPPPRGLQIHEKNLEHARKLDVARAHKVSQLDSRYSPYLVYNHPESVGTKQIHELETAFHLLVVCRYMRRIWNMLAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g39250 | LOC_Os02g39250.1 | Chr02 | 23707611 | 23709190 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGTTTGGTGGGAAAGAAACATGGGGCTAGCTAGACGCACCACTCAAGTCAACCTGGGCGTGCTAAATCTAGAAAGCTTTGCACTAGCACTACATGTCAGATGGCTATGGTATGAATGGAAATCCCTGGACAAAGCATGGGTCGGCTTGGATACCCTGTGCGACGAAACCGATAAAATACTCTTGTCAACTACAATGATAACCATTGGGGACGGAGCAACATCACATTTTTGGGACTTAGCCTGGATGCACGGTCGCCACCCGAAGGATGTCATGCCACAAGTGTACACAATCTCCAAAGGGAAGAATAGAACCTTGAGGGATACCATCACAGACAATACCTGGTCGCAAGACCTAAATCTCTCAATCATCGGAGACATGTCAACTAAGCTTCTAGAGCAACTAGTGACCTTGTGGACAACAGTTCAAAGCGTGCAACTCTCCCCAGGTGTTGTAGATGAAATCATTTGGAGGCTCACAAATCATGAAGAATACTCGGGACTGGATATTAGACAAACTAGTGATTCAAGGATGTCCAAACAACACTTACTGCCTGCTCTGCAGACACGAATTGGAGACTGCTTTCCACCTCCTCGTGGACTGCAGATACATGAGAAGAATCTGGAACATGCTCGCAAACTAGATGTTGCAAGGGCACATAAAGTCAGCCAGCTGGATTCCCGCTATAGTCCATACCTGGTGTACAATCATCCGGAAAGCGTAGGCACCAAACAAATACACGAATTGGAGACTGCTTTCCACCTCCTCGTGGTCTGCAGATACATGAGAAGAATCTGGAACATGCTCGCAAACTAG
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| Protein seq | MAVWWERNMGLARRTTQVNLGVLNLESFALALHVRWLWYEWKSLDKAWVGLDTLCDETDKILLSTTMITIGDGATSHFWDLAWMHGRHPKDVMPQVYTISKGKNRTLRDTITDNTWSQDLNLSIIGDMSTKLLEQLVTLWTTVQSVQLSPGVVDEIIWRLTNHEEYSGLDIRQTSDSRMSKQHLLPALQTRIGDCFPPPRGLQIHEKNLEHARKLDVARAHKVSQLDSRYSPYLVYNHPESVGTKQIHELETAFHLLVVCRYMRRIWNMLAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41430 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0387200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0415000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0035840 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0035880 | SBH | 0.000000 | 16.557337 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0035860 | SBH | 0.0 | 0.000000 | 0.646517 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036090 | SBH | 0.0 | 0.000000 | 1.007620 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0035830 | SBH | 0.0 | 0.0 | 0.000000 |
