Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g37840 | OGI:02072830 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:22842795-22844941 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGCAGATGCTTCATAGATCAAAAAAACAGAGTCTATTCATTAAGATAGACATAGCAAAGGCATTCGACACTGTGAATTGGCCATATCTCCTGGAGGTCCTTCGTCATTTCGGCTTTGGACATCATTGGTTAAATTGGATCTCTAATCTGTTTTCCACCTCCTCGTCCCAGGTGCTCCTAAATGGTTCCCCAGGGATGAGAATTAATCATGCTAAGGGACTCCGTCAGGGAGATCCCCTGTCCCCGATGTTGTTTATTGTAGCTATGGAGCCTTTTCACCGGATCATTAAAGCAGCGGAGAGTGCCAATGTGTTAGCCCTGATTGGTGTGAGAAGTGGCATATTCAGATGTTCTCTCTACGTGGATGATGTGGCAGTTTTTGCTCTCCCAAATCCCGATGACCTGAATGCTCTTTCTCGCATCCTTTCGTGTTTTGCACAAATTTCTGGTTTACATTCTAACATCAACAAAACTGAGATTTTCCCCATCAGTTGCAATGGAATCGACATGCAACAGCTTCTTGCCGGTTGGCCAGGGCAGATCAAGAATTTCCCTTGCCGCTACCTAGGCCTCCCGCTCCACTTCAGGAAATTAAGGAAAATTGATTTCCTTCCTCTTATAGACAAGATCGGGGCCAGACTACCAGCTTGGAAAGGTCGCTTCTTTACCTCTGCAGGTCACCAAACCCTAGTTAACTCGGTTCTTAGTGCTATGCCGATGCATCATCTTACAGTCCTTCATGCGCCAAAATGGGTCTTCAAAAGAATCGACCGTTTCAGAAGATCTTTTCTGTGGAAGGGCGAAGACCCTGATCATTCAAATCCAAGTGATAGTCTAGTCAATTGGCAAACTGTTTGCAAACCGAAAAGCTTAGGAGGGTTAGGCCTTCCGGATCTGGACAGGTTCTCTAGAGCACTCCGACTCCGCTGGCTCTGGTTCAAGTGGAAAGAAGTTGATAAACCCTGGGTAGGCATGAATGTGCCTTGTGATGAGATGGACACAAGACTCTTTCAAGCGGCAACGACAATAACGATTGGTGACGGAGCAAAAACTAGCTTCTGGCATGATAATTGGATCCAAAACCGTTGTTTAAAAGATATTGTGCCCAGTTGTTTTAGCCTGGCAAAGAGAAAGCAAAGATCAGTTCAGATGGAAATGCGAGATAATAGATGGCTCACTTCCTTCAGACAATTCACTTCCGTGGAACAAATCCATGATTTGGTACAGCTTGGTGGATTACTCCAACTGGTTTCGCTTTCCCAGGATCCTGACAACATCACCTTGAATTGGACCGAGTCTGGCGTCTACACAACAAAGAGTGCTTACCTTTTCCAGTTCGAAGGCTCATTTGCCACCAATGAGTTTGATTCTCTATGGAAATCCCCGACTGAACCAAAAATAAAATTCTTTGGTTGGCTAGTTCTCCATCAAAAAACTTTGACTGCCCAAAATCTGCTCCGCAGGCATTGGCCTTGCAATTGGATATGTTGCCTTTGTGGTTGTGCCTTTGAAGATACAAATCATTTGTTCAGTTACTGTGTGTTTGTCAGAAAAGTGTGGACCCTAATTTGTCAATTCCAAAACTTGTCTTCGGTCGGAATAAATCCTGTCCTGGATGTGTCAACATGGTGGTCTAGAACCAAATTTGCAGGCTCTAAGAAGGATGTGCAGCTGGTCAGAGGAACTCTTCTAACTACTTGGTGGAATATTTGGTTGGAAAGAAATAGAAGAATTTTCCAAAACTCTTCCTGTTCAGAGATTGAAGTAGCTTATTTTATCAAGCAAGCTATTGATATGCGCAGCTTGGCCTTTAAACCCCCATGAATTTTTTTTAGCTTTTCCTGCAGCTGTAATTCTCTTTCCATTCCTTGGCTTGTAACCTCTGAATCTCTGTGCTACTTTGTAATTTTTCTCTTCTAATGTTAAATTCCGGCAGATCTCCTGCCGTCGTTCTCCTCAAAAAAAATAACCATCGTAAATTCTTGACTAAAACGATCTTGACAGACTGAGAAATGGGGAGTGATGTTTCTAAAGATTTTGTTGTTTCTTGGTAGCCAAAAGCTCCATGCCATTGCGATTATGAGTTCCATATAGAAGGGGACTTGCAACTTGATTCTCAAATCTTCAAGTGCCTCTTGGACTGA
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| CDS seq | ATGGTGCAGATGCTTCATAGATCAAAAAAACAGAGTCTATTCATTAAGATAGACATAGCAAAGGCATTCGACACTGTGAATTGGCCATATCTCCTGGAGGTCCTTCGTCATTTCGGCTTTGGACATCATTGGTTAAATTGGATCTCTAATCTGTTTTCCACCTCCTCGTCCCAGGTGCTCCTAAATGGTTCCCCAGGGATGAGAATTAATCATGCTAAGGGACTCCGTCAGGGAGATCCCCTGTCCCCGATGTTGTTTATTGTAGCTATGGAGCCTTTTCACCGGATCATTAAAGCAGCGGAGAGTGCCAATGTGTTAGCCCTGATTGGTGTGAGAAGTGGCATATTCAGATGTTCTCTCTACGTGGATGATGTGGCAGTTTTTGCTCTCCCAAATCCCGATGACCTGAATGCTCTTTCTCGCATCCTTTCGTGTTTTGCACAAATTTCTGGTTTACATTCTAACATCAACAAAACTGAGATTTTCCCCATCAGTTGCAATGGAATCGACATGCAACAGCTTCTTGCCGGTTGGCCAGGGCAGATCAAGAATTTCCCTTGCCGCTACCTAGGCCTCCCGCTCCACTTCAGGAAATTAAGGAAAATTGATTTCCTTCCTCTTATAGACAAGATCGGGGCCAGACTACCAGCTTGGAAAGGTCGCTTCTTTACCTCTGCAGGTCACCAAACCCTAGTTAACTCGGTTCTTAGTGCTATGCCGATGCATCATCTTACAGTCCTTCATGCGCCAAAATGGGTCTTCAAAAGAATCGACCGTTTCAGAAGATCTTTTCTGTGGAAGGGCGAAGACCCTGATCATTCAAATCCAAGTGATAGTCTAGTCAATTGGCAAACTGTTTGCAAACCGAAAAGCTTAGGAGGGTTAGGCCTTCCGGATCTGGACAGGTTCTCTAGAGCACTCCGACTCCGCTGGCTCTGGTTCAAGTGGAAAGAAGTTGATAAACCCTGGGTAGGCATGAATGTGCCTTGTGATGAGATGGACACAAGACTCTTTCAAGCGGCAACGACAATAACGATTGGTGACGGAGCAAAAACTAGCTTCTGGCATGATAATTGGATCCAAAACCGTTGTTTAAAAGATATTGTGCCCAGTTGTTTTAGCCTGGCAAAGAGAAAGCAAAGATCAGTTCAGATGGAAATGCGAGATAATAGATGGCTCACTTCCTTCAGACAATTCACTTCCGTGGAACAAATCCATGATTTGGTACAGCTTGGTGGATTACTCCAACTGGTTTCGCTTTCCCAGGATCCTGACAACATCACCTTGAATTGGACCGAGTCTGGCGTCTACACAACAAAGAGTGCTTACCTTTTCCAGTTCGAAGGCTCATTTGCCACCAATGAGTTTGATTCTCTATGGAAATCCCCGACTGAACCAAAAATAAAATTCTTTGGCATTGGCCTTGCAATTGGATATGTTGCCTTTGTGGTTGTGCCTTTGAAGATACAAATCATTTGTTCAGTTACTCCAAAAGCTCCATGCCATTGCGATTATGAGTTCCATATAGAAGGGGACTTGCAACTTGATTCTCAAATCTTCAAGTGCCTCTTGGACTGA
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| Protein seq | MVQMLHRSKKQSLFIKIDIAKAFDTVNWPYLLEVLRHFGFGHHWLNWISNLFSTSSSQVLLNGSPGMRINHAKGLRQGDPLSPMLFIVAMEPFHRIIKAAESANVLALIGVRSGIFRCSLYVDDVAVFALPNPDDLNALSRILSCFAQISGLHSNINKTEIFPISCNGIDMQQLLAGWPGQIKNFPCRYLGLPLHFRKLRKIDFLPLIDKIGARLPAWKGRFFTSAGHQTLVNSVLSAMPMHHLTVLHAPKWVFKRIDRFRRSFLWKGEDPDHSNPSDSLVNWQTVCKPKSLGGLGLPDLDRFSRALRLRWLWFKWKEVDKPWVGMNVPCDEMDTRLFQAATTITIGDGAKTSFWHDNWIQNRCLKDIVPSCFSLAKRKQRSVQMEMRDNRWLTSFRQFTSVEQIHDLVQLGGLLQLVSLSQDPDNITLNWTESGVYTTKSAYLFQFEGSFATNEFDSLWKSPTEPKIKFFGIGLAIGYVAFVVVPLKIQIICSVTPKAPCHCDYEFHIEGDLQLDSQIFKCLLD |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g37840 | LOC_Os02g37840.1 | Chr02 | 22842795 | 22844941 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGCAGATGCTTCATAGATCAAAAAAACAGAGTCTATTCATTAAGATAGACATAGCAAAGGCATTCGACACTGTGAATTGGCCATATCTCCTGGAGGTCCTTCGTCATTTCGGCTTTGGACATCATTGGTTAAATTGGATCTCTAATCTGTTTTCCACCTCCTCGTCCCAGGTGCTCCTAAATGGTTCCCCAGGGATGAGAATTAATCATGCTAAGGGACTCCGTCAGGGAGATCCCCTGTCCCCGATGTTGTTTATTGTAGCTATGGAGCCTTTTCACCGGATCATTAAAGCAGCGGAGAGTGCCAATGTGTTAGCCCTGATTGGTGTGAGAAGTGGCATATTCAGATGTTCTCTCTACGTGGATGATGTGGCAGTTTTTGCTCTCCCAAATCCCGATGACCTGAATGCTCTTTCTCGCATCCTTTCGTGTTTTGCACAAATTTCTGGTTTACATTCTAACATCAACAAAACTGAGATTTTCCCCATCAGTTGCAATGGAATCGACATGCAACAGCTTCTTGCCGGTTGGCCAGGGCAGATCAAGAATTTCCCTTGCCGCTACCTAGGCCTCCCGCTCCACTTCAGGAAATTAAGGAAAATTGATTTCCTTCCTCTTATAGACAAGATCGGGGCCAGACTACCAGCTTGGAAAGGTCGCTTCTTTACCTCTGCAGGTCACCAAACCCTAGTTAACTCGGTTCTTAGTGCTATGCCGATGCATCATCTTACAGTCCTTCATGCGCCAAAATGGGTCTTCAAAAGAATCGACCGTTTCAGAAGATCTTTTCTGTGGAAGGGCGAAGACCCTGATCATTCAAATCCAAGTGATAGTCTAGTCAATTGGCAAACTGTTTGCAAACCGAAAAGCTTAGGAGGGTTAGGCCTTCCGGATCTGGACAGGTTCTCTAGAGCACTCCGACTCCGCTGGCTCTGGTTCAAGTGGAAAGAAGTTGATAAACCCTGGGTAGGCATGAATGTGCCTTGTGATGAGATGGACACAAGACTCTTTCAAGCGGCAACGACAATAACGATTGGTGACGGAGCAAAAACTAGCTTCTGGCATGATAATTGGATCCAAAACCGTTGTTTAAAAGATATTGTGCCCAGTTGTTTTAGCCTGGCAAAGAGAAAGCAAAGATCAGTTCAGATGGAAATGCGAGATAATAGATGGCTCACTTCCTTCAGACAATTCACTTCCGTGGAACAAATCCATGATTTGGTACAGCTTGGTGGATTACTCCAACTGGTTTCGCTTTCCCAGGATCCTGACAACATCACCTTGAATTGGACCGAGTCTGGCGTCTACACAACAAAGAGTGCTTACCTTTTCCAGTTCGAAGGCTCATTTGCCACCAATGAGTTTGATTCTCTATGGAAATCCCCGACTGAACCAAAAATAAAATTCTTTGGCATTGGCCTTGCAATTGGATATGTTGCCTTTGTGGTTGTGCCTTTGAAGATACAAATCATTTGTTCAGTTACTCCAAAAGCTCCATGCCATTGCGATTATGAGTTCCATATAGAAGGGGACTTGCAACTTGATTCTCAAATCTTCAAGTGCCTCTTGGACTGA
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| Protein seq | MVQMLHRSKKQSLFIKIDIAKAFDTVNWPYLLEVLRHFGFGHHWLNWISNLFSTSSSQVLLNGSPGMRINHAKGLRQGDPLSPMLFIVAMEPFHRIIKAAESANVLALIGVRSGIFRCSLYVDDVAVFALPNPDDLNALSRILSCFAQISGLHSNINKTEIFPISCNGIDMQQLLAGWPGQIKNFPCRYLGLPLHFRKLRKIDFLPLIDKIGARLPAWKGRFFTSAGHQTLVNSVLSAMPMHHLTVLHAPKWVFKRIDRFRRSFLWKGEDPDHSNPSDSLVNWQTVCKPKSLGGLGLPDLDRFSRALRLRWLWFKWKEVDKPWVGMNVPCDEMDTRLFQAATTITIGDGAKTSFWHDNWIQNRCLKDIVPSCFSLAKRKQRSVQMEMRDNRWLTSFRQFTSVEQIHDLVQLGGLLQLVSLSQDPDNITLNWTESGVYTTKSAYLFQFEGSFATNEFDSLWKSPTEPKIKFFGIGLAIGYVAFVVVPLKIQIICSVTPKAPCHCDYEFHIEGDLQLDSQIFKCLLD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0818601 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g26250 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0818601 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0339400 | SBH | 0.0732455 | 0.110578 | 0.0924315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0401500 | RBH | 0 | 0.1171495 | 0.0983915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0035840 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0035880 | SBH | 0.000000 | 16.557337 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0035860 | SBH | 0.0 | 0.000000 | 0.646517 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036090 | SBH | 0.0 | 0.000000 | 1.007620 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0035830 | SBH | 0.0 | 0.0 | 0.000000 |
