Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g36330 | OGI:02062630 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:21927567-21928919 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTAAAAATCAACTCCAGCTCAAGGTTCATTTCTTCATATATCTGACATGTAAGATGCAATCTCTCTTTGGGTGTTCACAACTGTACAGGATACCGAGTTCACAATCGATTTCAGTAAATATTTTTGTTTTGTATTTCTTTTTACCCCCGAGATGATCACAACGGCAGCATCGAGCTAGAAGTGCGGCCATGCCGCGAGGGGAGAGATCGCCGGCCTCCGCCGCCGGAGAAAGACCTCCTCATGTGGTGCAAGCGGCCGGAGCCCGACGGCGCCTTGCCGCAGCAGGCAGAGTCACCGCCGCTCCCCTGTTTCTCTTTGCTGCTCTGCGTCGTCGTCTGCTCGTCTTCAGGAGCATCCTCGGATGGCGCCGGTGGCGAGCGCGAGCCCATGGAGGCTACTCGCCGGAAACTCTGCGCGCTGCGCGGGTCGGGACTCCGGCGCGGCGGCTCCGGCGAGCTGGGCTGGTCGCGCCGATCGATTTGTACCCGGAGCTCGTGCTGCTCCCCCTGCTGCTGTTGACCAGGGTTTTCTTGGTCCGCGGTTTGATCGGTGGGGCTCGAGGCTTGGTCGGTGGCTGCGCCGCCGCCGCCGCCGCCGCCGCCGTTAGCGCCGGCGGGTGGCGGGACGCGTTCCCCGTCCCCGGCGTCGGCGTCGGCGTCGGCGGGGTGCAGGACGTGGGCGCGGCAGAGCGGGCAGTTGACGTGGGCGCGGAGCCAGGCGTCGATGCAGGGGACGTGGAACGCGTGGCCGCACTTGGGGAGGAGGCGGAGGAGCTCGCCGTCGCGGAACTCGCCGAGGCAGACGGGGCAGTCGGTGGCGCCGAGCATGCCGGCGCCGGCGCGGTACCGCGCGAGGGCGATGGACTCGATCGCCGCCTCGTCGAGCCCGACGGTGCGGATGTGCCACGCGTGGTGCAGCACCTCCCCCTCCCCCTCCCCCTCCCCGGCGCCGCCCACCGCCCCGTCGCCGGCGGCGACCGGCGCACCCGGTGCGCCGCCTCCTCCAGCCGCATCAGAAGGGGGAGGTGCTAGAAGCGCCTCACGCCGCGCCCGCTGCTGGCGCCTGCGGCGGATGAAGCAGTAGACGGAGAAGGCGAGGAGGATGGCGAAGAGCAGGGACGCGGTGGTGGCGAGCGCGATCACCACGCGGCGGTGGTCACGCGAGTGGGGAGGAGGAGGAGGAGGAGGAGAGGGACAGTCGTAGCAGGCGCCATCGGAGCCCGGTTTCGGCGGCTCGGGGACCGGCGGTTTCGGCGGATCGGGGAAGGGTTTCGCCATCAAGAGAGAGATGAAGGGAAGCTAGGAGGAGTAGTAAAAATGTAAAACCAGAGAGAGAAGAAGAAGAACGAGGCGT
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| CDS seq | ATGGCGAAACCCTTCCCCGATCCGCCGAAACCGCCGGTCCCCGAGCCGCCGAAACCGGGCTCCGATGGCGCCTGCTACGACTGTCCCTCTCCTCCTCCTCCTCCTCCTCCCCACTCGCGTGACCACCGCCGCGTGGTGATCGCGCTCGCCACCACCGCGTCCCTGCTCTTCGCCATCCTCCTCGCCTTCTCCGTCTACTGCTTCATCCGCCGCAGGCGCCAGCAGCGGGCGCGGCGTGAGGCGCTTCTAGCACCTCCCCCTTCTGATGCGGCTGGAGGAGGCGGCGCACCGGGTGCGCCGGTCGCCGCCGGCGACGGGGCGGTGGGCGGCGCCGGGGAGGGGGAGGGGGAGGGGGAGGTGCTGCACCACGCGTGGCACATCCGCACCGTCGGGCTCGACGAGGCGGCGATCGAGTCCATCGCCCTCGCGCGGTACCGCGCCGGCGCCGGCATGCTCGGCGCCACCGACTGCCCCGTCTGCCTCGGCGAGTTCCGCGACGGCGAGCTCCTCCGCCTCCTCCCCAAGTGCGGCCACGCGTTCCACGTCCCCTGCATCGACGCCTGGCTCCGCGCCCACGTCAACTGCCCGCTCTGCCGCGCCCACGTCCTGCACCCCGCCGACGCCGACGCCGACGCCGGGGACGGGGAACGCGTCCCGCCACCCGCCGGCGCTAACGGCGGCGGCGGCGGCGGCGGCGGCGCAGCCACCGACCAAGCCTCGAGCCCCACCGATCAAACCGCGGACCAAGAAAACCCTGGTCAACAGCAGCAGGGGGAGCAGCACGAGCTCCGGGTACAAATCGATCGGCGCGACCAGCCCAGCTCGCCGGAGCCGCCGCGCCGGAGTCCCGACCCGCGCAGCGCGCAGAGTTTCCGGCGAGTAGCCTCCATGGGCTCGCGCTCGCCACCGGCGCCATCCGAGGATGCTCCTGAAGACGAGCAGACGACGACGCAGAGCAGCAAAGAGAAACAGGGGAGCGGCGGTGACTCTGCCTGCTGCGGCAAGGCGCCGTCGGGCTCCGGCCGCTTGCACCACATGAGGAGGTCTTTCTCCGGCGGCGGAGGCCGGCGATCTCTCCCCTCGCGGCATGGCCGCACTTCTAGCTCGATGCTGCCGTTGTGA
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| Protein seq | MAKPFPDPPKPPVPEPPKPGSDGACYDCPSPPPPPPPHSRDHRRVVIALATTASLLFAILLAFSVYCFIRRRRQQRARREALLAPPPSDAAGGGGAPGAPVAAGDGAVGGAGEGEGEGEVLHHAWHIRTVGLDEAAIESIALARYRAGAGMLGATDCPVCLGEFRDGELLRLLPKCGHAFHVPCIDAWLRAHVNCPLCRAHVLHPADADADAGDGERVPPPAGANGGGGGGGGAATDQASSPTDQTADQENPGQQQQGEQHELRVQIDRRDQPSSPEPPRRSPDPRSAQSFRRVASMGSRSPPAPSEDAPEDEQTTTQSSKEKQGSGGDSACCGKAPSGSGRLHHMRRSFSGGGGRRSLPSRHGRTSSSMLPL |
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| Function | RING-H2 finger protein ATL54 [UniProtKB/Swiss-Prot:Q8LFY8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g36330 | LOC_Os02g36330.1 | Chr02 | 21927567 | 21928919 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGAAACCCTTCCCCGATCCGCCGAAACCGCCGGTCCCCGAGCCGCCGAAACCGGGCTCCGATGGCGCCTGCTACGACTGTCCCTCTCCTCCTCCTCCTCCTCCTCCCCACTCGCGTGACCACCGCCGCGTGGTGATCGCGCTCGCCACCACCGCGTCCCTGCTCTTCGCCATCCTCCTCGCCTTCTCCGTCTACTGCTTCATCCGCCGCAGGCGCCAGCAGCGGGCGCGGCGTGAGGCGCTTCTAGCACCTCCCCCTTCTGATGCGGCTGGAGGAGGCGGCGCACCGGGTGCGCCGGTCGCCGCCGGCGACGGGGCGGTGGGCGGCGCCGGGGAGGGGGAGGGGGAGGGGGAGGTGCTGCACCACGCGTGGCACATCCGCACCGTCGGGCTCGACGAGGCGGCGATCGAGTCCATCGCCCTCGCGCGGTACCGCGCCGGCGCCGGCATGCTCGGCGCCACCGACTGCCCCGTCTGCCTCGGCGAGTTCCGCGACGGCGAGCTCCTCCGCCTCCTCCCCAAGTGCGGCCACGCGTTCCACGTCCCCTGCATCGACGCCTGGCTCCGCGCCCACGTCAACTGCCCGCTCTGCCGCGCCCACGTCCTGCACCCCGCCGACGCCGACGCCGACGCCGGGGACGGGGAACGCGTCCCGCCACCCGCCGGCGCTAACGGCGGCGGCGGCGGCGGCGGCGGCGCAGCCACCGACCAAGCCTCGAGCCCCACCGATCAAACCGCGGACCAAGAAAACCCTGGTCAACAGCAGCAGGGGGAGCAGCACGAGCTCCGGGTACAAATCGATCGGCGCGACCAGCCCAGCTCGCCGGAGCCGCCGCGCCGGAGTCCCGACCCGCGCAGCGCGCAGAGTTTCCGGCGAGTAGCCTCCATGGGCTCGCGCTCGCCACCGGCGCCATCCGAGGATGCTCCTGAAGACGAGCAGACGACGACGCAGAGCAGCAAAGAGAAACAGGGGAGCGGCGGTGACTCTGCCTGCTGCGGCAAGGCGCCGTCGGGCTCCGGCCGCTTGCACCACATGAGGAGGTCTTTCTCCGGCGGCGGAGGCCGGCGATCTCTCCCCTCGCGGCATGGCCGCACTTCTAGCTCGATGCTGCCGTTGTGA
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| Protein seq | MAKPFPDPPKPPVPEPPKPGSDGACYDCPSPPPPPPPHSRDHRRVVIALATTASLLFAILLAFSVYCFIRRRRQQRARREALLAPPPSDAAGGGGAPGAPVAAGDGAVGGAGEGEGEGEVLHHAWHIRTVGLDEAAIESIALARYRAGAGMLGATDCPVCLGEFRDGELLRLLPKCGHAFHVPCIDAWLRAHVNCPLCRAHVLHPADADADAGDGERVPPPAGANGGGGGGGGAATDQASSPTDQTADQENPGQQQQGEQHELRVQIDRRDQPSSPEPPRRSPDPRSAQSFRRVASMGSRSPPAPSEDAPEDEQTTTQSSKEKQGSGGDSACCGKAPSGSGRLHHMRRSFSGGGGRRSLPSRHGRTSSSMLPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.244054 | 0.553077 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0832150 | SBH | 0.919035 | 0.922887 | 1.815677 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37740 | RBH | 0.0 | 0.192017 | 0.087575 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0832150 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021960 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022060 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021760 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021720 | RBH | 0.0 | 3.602048 | 0.355934 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0359300 | SBH | 0 | 10.913492 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021460 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0386800 | RBH | 0.4340515 | 28.1772805 | 0.1582395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021890 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021630 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022090 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021620 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022080 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021840 | SBH | 0.0 | 0.0 | 0.0 |
