Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os02g33890		OGI:02058270 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr02:20195676-20198183		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		-
DNA seq		CTATACCACATGAGTGACAGGAAAGCTCTGATAGTCGTGGTGCCTGTGCACACGCACGCCGGCGTGCGTGATCATTGCCCAGATGTGGGTGATGAACTCGCCGCCGTTGGCCAGCGCCAGCGCGTGCCCCTCCGGACCCGCCGACGGCCTCTGCGCGACGACGACGAGCAACGCCGCCCAGAACTCGAGAAGCATCGTCCACACCTCCTCGAAGCCCTCGGTCGACTCGGAGGCGCGGTCCTCGAGCAGCTTCCCGAGCTTGACCCCCCTGGCCATGGCGGACGGCGCCTCCGCCTCCCAGTCGTCGCCGAACCGCACCAGCTTCTCCCGCCGGCCCGCGGTGGCGCAGCTGCAGCTACGGAAGAAGCTGCCGAGGCCCGACTTCACGTCGTTGTACGCCTTCTCCGTCCACTCCGGGTCGTCGGGAAGCAGCCCGGGCTCGTAGGATACCAGGTAGGCGCAGTACCTCGACAGCGTCACCGCCGCCTCGCCCTTGCGCGGCAGCGGCTCGCCGTCGCAGCGGGCCTCGAGCAGCGCCGTGGCGAGGTGCCACGCCAGGATCACCGTGGCGGCGCCCTTGCTGCTGTCGCACGCCCACTCGGGCCCGTGGTGGAAGAACCCGTGCCTGCGCAGGACGGCCACGCAGCTGGTGAACTGGAGGTCGCCGCCGTCGCCGCCGTCGCTCTCGAGGAAGGCCTTGAGGGCCGCGACGATGGCCACCTTGGCCTCGGCGGTGACGACGGCGGGGCGGAGGCCGGCGAGGCGGCGCGAGAGGATGCGCGACGCGAGCATCCACACGCGGCGCGGGTGCAGCTGGTGGAGCTTGAGCATGGTGACCTGGTGCGCCTTGATGACGGGGCGCGACCGGTGCCTCACCCAGAGGCCGCTCCGGATGGCGCGCTGGGCGTGGCGCTGCTGCGCCGCCTGCCTGCGCTGGTGGTCGCGGTTGATCCGCATCCGGGCGTAGTTGCAGAGCATGGAGGCGGCGAACCAGTCGGAGAGCAGGTACAGCGCGAGCTCGTAGGTCTCGACGGAGAAGAGGGTGAGCGTGAGGAGGAAGGTGACGATGAGGTCGGAGGAGGAGCACACCATGCCGACGAGCGCCGACACCTGGTGGCGGAAGCACCTGAACTGCACCACCGTGTCGATGGAGATGCCGATGAATCCCCGGAACAGGGAGCCCAGCACCCTGAACATGTTGCCGTTGCCGGTGACGAGCAGCACGGCGATGCAGTAGAGGAGGATGAAGACGACGGAGAAGGCGAAGTTGGCGATGAAGATCCCCGGCTTCGGCAGCGCCAGCGGGATGATCGCCTGGTAGTACTCCACCAAGAACCTCAGCTCCATCTCCACCACGTCGAACGCCCTCTCGGCGTCGGCGGCCTCGCCGCCCCGGTCGCCGCCGCCGAGGGCGAGGAGGCCCCTGAGGACGAACGCCCGCGCCTCCGGTGTGCCTCTCTCCGCCATGTGGCACCGCTCTATCCTCCGCCGGAGCAGCTTGTAGAGCGCTATGCCCAGGCAGATGTCCTCCAGCTTCTGCCTCCTCCGCACGTTGTACTTGAACAGCGGGTCGCTCTCGGCGAGCTTCCAGATGGTGCTCACTCGGACCAGCTGCTCCTCCGTCTTGCCATTGCCATCGCCATCGCCGCTCGTCCCGCCGGCGGCGAGGATGTCCTCGAGGCCGTCGATCTCGAAGCCGTGCGGCGTCCGGTTGATCTTGAGCTCGCTCTCACCCATCACCGTGTAGTTGCATGCTCTCATGGTGCGGTTGCCGCGGACGTCGCCTCCGTCGTCGACAACCTGCAGGTCCAGCTGGCGGTGCTCCCCGACGAGCTGCGCCATGTAGCCGGAGACGAGCGTGGCGTTCTTGGCGAGGTCGAAGGAGCCCTTGGCGAGGTGGATGCAGGCGGCGCGCTTGCAGAGCTTGGCGACGCTGAAGATCCAGAGGATGACGAACAGGGACTTGACGGCGAAGCCGTGTACGTAGGAGTAGACGAGGTAGCCGATCCAGATCATGCGGGCGGCGTCCTCGACGGCGTCGAAGAGGCTGTACCTGCCGACGCCGCGGGAGAAGGCGTCGCCGGCGGGGGCGACCATGGCGAAGACCTTCTTGCGGAGGAGCTCGACGAGGAGCATCCAGAGGAGGATGAGGTAGGCGCGGAAGGGGAGGTCCCTGCCCTTGGCCTGGGAGAACATGAAGGACATGAAGGGGAGGAAGAGCGCGAAGGAGGCCCTGAAGAAGATGCGCGTCGCCGACGAGTGGCCCCTGTGCCTGCCGGAGAAGCGGCCGAGGACGCCGACGGCGAACAGCGCCGCGCCGAGGAAGGTCATGAGCACCGTCGTCGTCACCATGAACTTCTCCGTCGTGCGCAGGTCGGGCGACACCGCGAACGTCGCCACCAGCATCGGCCCCGGCGTCGTGCACACCGTCTTGTTGTTGATGACGATGTCCCGCATCACTACCCACCTCCCCTCGCCGCCGCCGCCGCCTCTCGAGTAGTGCTCCAT More
CDS seq		ATGGAGCACTACTCGAGAGGCGGCGGCGGCGGCGAGGGGAGGTGGGTAGTGATGCGGGACATCGTCATCAACAACAAGACGGTGTGCACGACGCCGGGGCCGATGCTGGTGGCGACGTTCGCGGTGTCGCCCGACCTGCGCACGACGGAGAAGTTCATGGTGACGACGACGGTGCTCATGACCTTCCTCGGCGCGGCGCTGTTCGCCGTCGGCGTCCTCGGCCGCTTCTCCGGCAGGCACAGGGGCCACTCGTCGGCGACGCGCATCTTCTTCAGGGCCTCCTTCGCGCTCTTCCTCCCCTTCATGTCCTTCATGTTCTCCCAGGCCAAGGGCAGGGACCTCCCCTTCCGCGCCTACCTCATCCTCCTCTGGATGCTCCTCGTCGAGCTCCTCCGCAAGAAGGTCTTCGCCATGGTCGCCCCCGCCGGCGACGCCTTCTCCCGCGGCGTCGGCAGGTACAGCCTCTTCGACGCCGTCGAGGACGCCGCCCGCATGATCTGGATCGGCTACCTCGTCTACTCCTACGTACACGGCTTCGCCGTCAAGTCCCTGTTCGTCATCCTCTGGATCTTCAGCGTCGCCAAGCTCTGCAAGCGCGCCGCCTGCATCCACCTCGCCAAGGGCTCCTTCGACCTCGCCAAGAACGCCACGCTCGTCTCCGGCTACATGGCGCAGCTCGTCGGGGAGCACCGCCAGCTGGACCTGCAGGTTGTCGACGACGGAGGCGACGTCCGCGGCAACCGCACCATGAGAGCATGCAACTACACGGTGATGGGTGAGAGCGAGCTCAAGATCAACCGGACGCCGCACGGCTTCGAGATCGACGGCCTCGAGGACATCCTCGCCGCCGGCGGGACGAGCGGCGATGGCGATGGCAATGGCAAGACGGAGGAGCAGCTGGTCCGAGTGAGCACCATCTGGAAGCTCGCCGAGAGCGACCCGCTGTTCAAGTACAACGTGCGGAGGAGGCAGAAGCTGGAGGACATCTGCCTGGGCATAGCGCTCTACAAGCTGCTCCGGCGGAGGATAGAGCGGTGCCACATGGCGGAGAGAGGCACACCGGAGGCGCGGGCGTTCGTCCTCAGGGGCCTCCTCGCCCTCGGCGGCGGCGACCGGGGCGGCGAGGCCGCCGACGCCGAGAGGGCGTTCGACGTGGTGGAGATGGAGCTGAGGTTCTTGGTGGAGTACTACCAGGCGATCATCCCGCTGGCGCTGCCGAAGCCGGGGATCTTCATCGCCAACTTCGCCTTCTCCGTCGTCTTCATCCTCCTCTACTGCATCGCCGTGCTGCTCGTCACCGGCAACGGCAACATGTTCAGGGTGCTGGGCTCCCTGTTCCGGGGATTCATCGGCATCTCCATCGACACGGTGGTGCAGTTCAGGTGCTTCCGCCACCAGGTGTCGGCGCTCGTCGGCATGGTGTGCTCCTCCTCCGACCTCATCGTCACCTTCCTCCTCACGCTCACCCTCTTCTCCGTCGAGACCTACGAGCTCGCGCTGTACCTGCTCTCCGACTGGTTCGCCGCCTCCATGCTCTGCAACTACGCCCGGATGCGGATCAACCGCGACCACCAGCGCAGGCAGGCGGCGCAGCAGCGCCACGCCCAGCGCGCCATCCGGAGCGGCCTCTGGGTGAGGCACCGGTCGCGCCCCGTCATCAAGGCGCACCAGGTCACCATGCTCAAGCTCCACCAGCTGCACCCGCGCCGCGTGTGGATGCTCGCGTCGCGCATCCTCTCGCGCCGCCTCGCCGGCCTCCGCCCCGCCGTCGTCACCGCCGAGGCCAAGGTGGCCATCGTCGCGGCCCTCAAGGCCTTCCTCGAGAGCGACGGCGGCGACGGCGGCGACCTCCAGTTCACCAGCTGCGTGGCCGTCCTGCGCAGGCACGGGTTCTTCCACCACGGGCCCGAGTGGGCGTGCGACAGCAGCAAGGGCGCCGCCACGGTGATCCTGGCGTGGCACCTCGCCACGGCGCTGCTCGAGGCCCGCTGCGACGGCGAGCCGCTGCCGCGCAAGGGCGAGGCGGCGGTGACGCTGTCGAGGTACTGCGCCTACCTGGTATCCTACGAGCCCGGGCTGCTTCCCGACGACCCGGAGTGGACGGAGAAGGCGTACAACGACGTGAAGTCGGGCCTCGGCAGCTTCTTCCGTAGCTGCAGCTGCGCCACCGCGGGCCGGCGGGAGAAGCTGGTGCGGTTCGGCGACGACTGGGAGGCGGAGGCGCCGTCCGCCATGGCCAGGGGGGTCAAGCTCGGGAAGCTGCTCGAGGACCGCGCCTCCGAGTCGACCGAGGGCTTCGAGGAGGTGTGGACGATGCTTCTCGAGTTCTGGGCGGCGTTGCTCGTCGTCGTCGCGCAGAGGCCGTCGGCGGGTCCGGAGGGGCACGCGCTGGCGCTGGCCAACGGCGGCGAGTTCATCACCCACATCTGGGCAATGATCACGCACGCCGGCGTGCGTGTGCACAGGCACCACGACTATCAGAGCTTTCCTGTCACTCATGTGGTATAG More
Protein seq		MEHYSRGGGGGEGRWVVMRDIVINNKTVCTTPGPMLVATFAVSPDLRTTEKFMVTTTVLMTFLGAALFAVGVLGRFSGRHRGHSSATRIFFRASFALFLPFMSFMFSQAKGRDLPFRAYLILLWMLLVELLRKKVFAMVAPAGDAFSRGVGRYSLFDAVEDAARMIWIGYLVYSYVHGFAVKSLFVILWIFSVAKLCKRAACIHLAKGSFDLAKNATLVSGYMAQLVGEHRQLDLQVVDDGGDVRGNRTMRACNYTVMGESELKINRTPHGFEIDGLEDILAAGGTSGDGDGNGKTEEQLVRVSTIWKLAESDPLFKYNVRRRQKLEDICLGIALYKLLRRRIERCHMAERGTPEARAFVLRGLLALGGGDRGGEAADAERAFDVVEMELRFLVEYYQAIIPLALPKPGIFIANFAFSVVFILLYCIAVLLVTGNGNMFRVLGSLFRGFIGISIDTVVQFRCFRHQVSALVGMVCSSSDLIVTFLLTLTLFSVETYELALYLLSDWFAASMLCNYARMRINRDHQRRQAAQQRHAQRAIRSGLWVRHRSRPVIKAHQVTMLKLHQLHPRRVWMLASRILSRRLAGLRPAVVTAEAKVAIVAALKAFLESDGGDGGDLQFTSCVAVLRRHGFFHHGPEWACDSSKGAATVILAWHLATALLEARCDGEPLPRKGEAAVTLSRYCAYLVSYEPGLLPDDPEWTEKAYNDVKSGLGSFFRSCSCATAGRREKLVRFGDDWEAEAPSAMARGVKLGKLLEDRASESTEGFEEVWTMLLEFWAALLVVVAQRPSAGPEGHALALANGGEFITHIWAMITHAGVRVHRHHDYQSFPVTHVV
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os02g33890	LOC_Os02g33890.1	Chr02	20195676	20198183	-	MSU_osa1r7
CDS seq	ATGGAGCACTACTCGAGAGGCGGCGGCGGCGGCGAGGGGAGGTGGGTAGTGATGCGGGACATCGTCATCAACAACAAGACGGTGTGCACGACGCCGGGGCCGATGCTGGTGGCGACGTTCGCGGTGTCGCCCGACCTGCGCACGACGGAGAAGTTCATGGTGACGACGACGGTGCTCATGACCTTCCTCGGCGCGGCGCTGTTCGCCGTCGGCGTCCTCGGCCGCTTCTCCGGCAGGCACAGGGGCCACTCGTCGGCGACGCGCATCTTCTTCAGGGCCTCCTTCGCGCTCTTCCTCCCCTTCATGTCCTTCATGTTCTCCCAGGCCAAGGGCAGGGACCTCCCCTTCCGCGCCTACCTCATCCTCCTCTGGATGCTCCTCGTCGAGCTCCTCCGCAAGAAGGTCTTCGCCATGGTCGCCCCCGCCGGCGACGCCTTCTCCCGCGGCGTCGGCAGGTACAGCCTCTTCGACGCCGTCGAGGACGCCGCCCGCATGATCTGGATCGGCTACCTCGTCTACTCCTACGTACACGGCTTCGCCGTCAAGTCCCTGTTCGTCATCCTCTGGATCTTCAGCGTCGCCAAGCTCTGCAAGCGCGCCGCCTGCATCCACCTCGCCAAGGGCTCCTTCGACCTCGCCAAGAACGCCACGCTCGTCTCCGGCTACATGGCGCAGCTCGTCGGGGAGCACCGCCAGCTGGACCTGCAGGTTGTCGACGACGGAGGCGACGTCCGCGGCAACCGCACCATGAGAGCATGCAACTACACGGTGATGGGTGAGAGCGAGCTCAAGATCAACCGGACGCCGCACGGCTTCGAGATCGACGGCCTCGAGGACATCCTCGCCGCCGGCGGGACGAGCGGCGATGGCGATGGCAATGGCAAGACGGAGGAGCAGCTGGTCCGAGTGAGCACCATCTGGAAGCTCGCCGAGAGCGACCCGCTGTTCAAGTACAACGTGCGGAGGAGGCAGAAGCTGGAGGACATCTGCCTGGGCATAGCGCTCTACAAGCTGCTCCGGCGGAGGATAGAGCGGTGCCACATGGCGGAGAGAGGCACACCGGAGGCGCGGGCGTTCGTCCTCAGGGGCCTCCTCGCCCTCGGCGGCGGCGACCGGGGCGGCGAGGCCGCCGACGCCGAGAGGGCGTTCGACGTGGTGGAGATGGAGCTGAGGTTCTTGGTGGAGTACTACCAGGCGATCATCCCGCTGGCGCTGCCGAAGCCGGGGATCTTCATCGCCAACTTCGCCTTCTCCGTCGTCTTCATCCTCCTCTACTGCATCGCCGTGCTGCTCGTCACCGGCAACGGCAACATGTTCAGGGTGCTGGGCTCCCTGTTCCGGGGATTCATCGGCATCTCCATCGACACGGTGGTGCAGTTCAGGTGCTTCCGCCACCAGGTGTCGGCGCTCGTCGGCATGGTGTGCTCCTCCTCCGACCTCATCGTCACCTTCCTCCTCACGCTCACCCTCTTCTCCGTCGAGACCTACGAGCTCGCGCTGTACCTGCTCTCCGACTGGTTCGCCGCCTCCATGCTCTGCAACTACGCCCGGATGCGGATCAACCGCGACCACCAGCGCAGGCAGGCGGCGCAGCAGCGCCACGCCCAGCGCGCCATCCGGAGCGGCCTCTGGGTGAGGCACCGGTCGCGCCCCGTCATCAAGGCGCACCAGGTCACCATGCTCAAGCTCCACCAGCTGCACCCGCGCCGCGTGTGGATGCTCGCGTCGCGCATCCTCTCGCGCCGCCTCGCCGGCCTCCGCCCCGCCGTCGTCACCGCCGAGGCCAAGGTGGCCATCGTCGCGGCCCTCAAGGCCTTCCTCGAGAGCGACGGCGGCGACGGCGGCGACCTCCAGTTCACCAGCTGCGTGGCCGTCCTGCGCAGGCACGGGTTCTTCCACCACGGGCCCGAGTGGGCGTGCGACAGCAGCAAGGGCGCCGCCACGGTGATCCTGGCGTGGCACCTCGCCACGGCGCTGCTCGAGGCCCGCTGCGACGGCGAGCCGCTGCCGCGCAAGGGCGAGGCGGCGGTGACGCTGTCGAGGTACTGCGCCTACCTGGTATCCTACGAGCCCGGGCTGCTTCCCGACGACCCGGAGTGGACGGAGAAGGCGTACAACGACGTGAAGTCGGGCCTCGGCAGCTTCTTCCGTAGCTGCAGCTGCGCCACCGCGGGCCGGCGGGAGAAGCTGGTGCGGTTCGGCGACGACTGGGAGGCGGAGGCGCCGTCCGCCATGGCCAGGGGGGTCAAGCTCGGGAAGCTGCTCGAGGACCGCGCCTCCGAGTCGACCGAGGGCTTCGAGGAGGTGTGGACGATGCTTCTCGAGTTCTGGGCGGCGTTGCTCGTCGTCGTCGCGCAGAGGCCGTCGGCGGGTCCGGAGGGGCACGCGCTGGCGCTGGCCAACGGCGGCGAGTTCATCACCCACATCTGGGCAATGATCACGCACGCCGGCGTGCGTGTGCACAGGCACCACGACTATCAGAGCTTTCCTGTCACTCATGTGGTATAG More
Protein seq	MEHYSRGGGGGEGRWVVMRDIVINNKTVCTTPGPMLVATFAVSPDLRTTEKFMVTTTVLMTFLGAALFAVGVLGRFSGRHRGHSSATRIFFRASFALFLPFMSFMFSQAKGRDLPFRAYLILLWMLLVELLRKKVFAMVAPAGDAFSRGVGRYSLFDAVEDAARMIWIGYLVYSYVHGFAVKSLFVILWIFSVAKLCKRAACIHLAKGSFDLAKNATLVSGYMAQLVGEHRQLDLQVVDDGGDVRGNRTMRACNYTVMGESELKINRTPHGFEIDGLEDILAAGGTSGDGDGNGKTEEQLVRVSTIWKLAESDPLFKYNVRRRQKLEDICLGIALYKLLRRRIERCHMAERGTPEARAFVLRGLLALGGGDRGGEAADAERAFDVVEMELRFLVEYYQAIIPLALPKPGIFIANFAFSVVFILLYCIAVLLVTGNGNMFRVLGSLFRGFIGISIDTVVQFRCFRHQVSALVGMVCSSSDLIVTFLLTLTLFSVETYELALYLLSDWFAASMLCNYARMRINRDHQRRQAAQQRHAQRAIRSGLWVRHRSRPVIKAHQVTMLKLHQLHPRRVWMLASRILSRRLAGLRPAVVTAEAKVAIVAALKAFLESDGGDGGDLQFTSCVAVLRRHGFFHHGPEWACDSSKGAATVILAWHLATALLEARCDGEPLPRKGEAAVTLSRYCAYLVSYEPGLLPDDPEWTEKAYNDVKSGLGSFFRSCSCATAGRREKLVRFGDDWEAEAPSAMARGVKLGKLLEDRASESTEGFEEVWTMLLEFWAALLVVVAQRPSAGPEGHALALANGGEFITHIWAMITHAGVRVHRHHDYQSFPVTHVV More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0020500	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0020600	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0020570	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0020320	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0020260	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0333500	RBH	0.1227305	0	0.005371
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0019970	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0356000	RBH	0.102502	0	0.015948
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0020480	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0020220	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0020630	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0020350	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0020140	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G020620	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0020330	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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