Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g28600 | OGI:02049510 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:16924023-16925375 | ||||||||
| Gene Symbol | OsFbox089, OsFbox89, Os_F0377 | ||||||||||
| DNA seq | ATGGCCGCCGCCACCAGCGACCACCTCTCCGGCCTCCCCGACGACCTCCTCCGGCACATCATCTCCTTGCTCTCTGCCAAGGAAGGCGCCGCCACCGCCGTGCTCTCGCGGCGTTGGCGTCCGCTGTGGCGCCAGGCGGGCACCGTCAACCTGGACACGGAGCCCTACTTGTACCCGGCAGCGTACAGAGGCAACAACTTCCCGGAGCACAGGCGGAGCGCATTCGTCGGCCACGCGCTGGCCGCCCTCGCCGCGTGCGAGAGCCCGAGGGTCCTGAGCCTTCGCCTCGTGTCGGAGGAGATCGAGGGAGGCGCTGCCGAGGAGAGGTGTGCCGGTGTGGTCGACGCCGTCCTGGACGCCCCGGCGGCGGCGCGCGTCGAGGAGCTCCGCGTCCGCTGCGCCGTCTCGTGGCTCTGCGAGCACGGCAGCTGCGAGCGCTCGAGCTCCAGCGGAACGTGGCGGCTGCGGCTCGGATCCCTGCCCTGCGCCGCGGCCACGCTCCGCGTTCTGCACGCCAACGACGTCGGCGTCGAACGCCTCGGCGACGGCGACGGCGGCGTCGTCCTCCCGCTCCTGGAGGAGATGCGGCTGGTGAAAGCCACCGTGTCACCGGAGACGCTCCAGGGCGTGATCGACGCCGCGCCGAGGCTCGCCAACCTGTGGCTCGAGAGGATCAGCTTCAGGAGCAACGACGGCAGCCGGGGCGTCTACCTCGCTGACGGCTTCCGCCTCCAGCTCTGAGGCCCGGCGCTCACCGAGCTAGCCCTCATCGGGTATTACAGTAGAGATCGCTGCATCGAGCTCGACGTGTCCCGCCTACGCTCCTTCGTAAACGAACGCTCCCTCCCGGGGCGCTTCTCCTTGACCTCGCCGGCGCCGGACCTCGCATCCGCCGACCTTCACTTCCACGACCACCGGAGCTATGGCGACAAAGATCCCAACAACTTGACCGTACCCATGTGGAGCTGCCTCCGGCACCTGCACGGCGTGAGGGTCTTGAAGCTGCAGCTGGACTTCTATGCAGAGTACATCGCCGTGGACGCCGACGACGCTGACGACGGCGTCCTCGCCACGTTCCCTAACCTTGAGTACCTCGAGCTTGACGCCCATTGCAAGGATGATCACGACATGGCCACAGAATTGACAGTAGCAAGCGTCCTCCGATGGTGCCCTGCCATCCGTGAGCTACGGCTCAGGTTGTCAGTAGCCGATGCTGAAGGCCGCGTCAATGTGATCTACAACAGCAAACGGCACATGATCCATCACGCAAGAATGATGAGGAACAGCTTTGGACAGGATGTGCAAACCAAAATTTATGTTGATGTGACCAACATTACGACATCCTCGCCGTAG
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| CDS seq | ATGGCCGCCGCCACCAGCGACCACCTCTCCGGCCTCCCCGACGACCTCCTCCGGCACATCATCTCCTTGCTCTCTGCCAAGGAAGGCGCCGCCACCGCCGTGCTCTCGCGGCGTTGGCGTCCGCTGTGGCGCCAGGCGGGCACCGTCAACCTGGACACGGAGCCCTACTTGTACCCGGCAGCGTACAGAGGCAACAACTTCCCGGAGCACAGGCGGAGCGCATTCGTCGGCCACGCGCTGGCCGCCCTCGCCGCGTGCGAGAGCCCGAGGGTCCTGAGCCTTCGCCTCGTGTCGGAGGAGATCGAGGGAGGCGCTGCCGAGGAGAGGTGTGCCGGTGTGGTCGACGCCGTCCTGGACGCCCCGGCGGCGGCGCGCGTCGAGGAGCTCCGCGTCCGCTGCGCCGTCTCGTGGCTCTGCGAGCACGGCAGCTGCGAGCGCTCGAGCTCCAGCGGAACGTGGCGGCTGCGGCTCGGATCCCTGCCCTGCGCCGCGGCCACGCTCCGCGTTCTGCACGCCAACGACGTCGGCGTCGAACGCCTCGGCGACGGCGACGGCGGCGTCGTCCTCCCGCTCCTGGAGGAGATGCGGCTGGTGAAAGCCACCGTGTCACCGGAGACGCTCCAGGGCGTGATCGACGCCGCGCCGAGGCTCGCCAACCTTAGAGATCGCTGCATCGAGCTCGACGTGTCCCGCCTACGCTCCTTCGTAAACGAACGCTCCCTCCCGGGGCGCTTCTCCTTGACCTCGCCGGCGCCGGACCTCGCATCCGCCGACCTTCACTTCCACGACCACCGGAGCTATGGCGACAAAGATCCCAACAACTTGACCGTACCCATGTGGAGCTGCCTCCGGCACCTGCACGGCGTGAGGGTCTTGAAGCTGCAGCTGGACTTCTATGCAGAGTACATCGCCGTGGACGCCGACGACGCTGACGACGGCGTCCTCGCCACGTTCCCTAACCTTGAGTACCTCGAGCTTGACGCCCATTGCAAGGATGATCACGACATGGCCACAGAATTGACAGTAGCAAGCGTCCTCCGATGGTGCCCTGCCATCCGTGAGCTACGGCTCAGGTTGTCAGTAGCCGATGCTGAAGGCCGCGTCAATGTGATCTACAACAGCAAACGGCACATGATCCATCACGCAAGAATGATGAGGAACAGCTTTGGACAGGATGTGCAAACCAAAATTTATGTTGATGTGACCAACATTACGACATCCTCGCCGTAG
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| Protein seq | MAAATSDHLSGLPDDLLRHIISLLSAKEGAATAVLSRRWRPLWRQAGTVNLDTEPYLYPAAYRGNNFPEHRRSAFVGHALAALAACESPRVLSLRLVSEEIEGGAAEERCAGVVDAVLDAPAAARVEELRVRCAVSWLCEHGSCERSSSSGTWRLRLGSLPCAAATLRVLHANDVGVERLGDGDGGVVLPLLEEMRLVKATVSPETLQGVIDAAPRLANLRDRCIELDVSRLRSFVNERSLPGRFSLTSPAPDLASADLHFHDHRSYGDKDPNNLTVPMWSCLRHLHGVRVLKLQLDFYAEYIAVDADDADDGVLATFPNLEYLELDAHCKDDHDMATELTVASVLRWCPAIRELRLRLSVADAEGRVNVIYNSKRHMIHHARMMRNSFGQDVQTKIYVDVTNITTSSP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g28600 | LOC_Os02g28600.1 | Chr02 | 16924023 | 16925375 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGCCGCCACCAGCGACCACCTCTCCGGCCTCCCCGACGACCTCCTCCGGCACATCATCTCCTTGCTCTCTGCCAAGGAAGGCGCCGCCACCGCCGTGCTCTCGCGGCGTTGGCGTCCGCTGTGGCGCCAGGCGGGCACCGTCAACCTGGACACGGAGCCCTACTTGTACCCGGCAGCGTACAGAGGCAACAACTTCCCGGAGCACAGGCGGAGCGCATTCGTCGGCCACGCGCTGGCCGCCCTCGCCGCGTGCGAGAGCCCGAGGGTCCTGAGCCTTCGCCTCGTGTCGGAGGAGATCGAGGGAGGCGCTGCCGAGGAGAGGTGTGCCGGTGTGGTCGACGCCGTCCTGGACGCCCCGGCGGCGGCGCGCGTCGAGGAGCTCCGCGTCCGCTGCGCCGTCTCGTGGCTCTGCGAGCACGGCAGCTGCGAGCGCTCGAGCTCCAGCGGAACGTGGCGGCTGCGGCTCGGATCCCTGCCCTGCGCCGCGGCCACGCTCCGCGTTCTGCACGCCAACGACGTCGGCGTCGAACGCCTCGGCGACGGCGACGGCGGCGTCGTCCTCCCGCTCCTGGAGGAGATGCGGCTGGTGAAAGCCACCGTGTCACCGGAGACGCTCCAGGGCGTGATCGACGCCGCGCCGAGGCTCGCCAACCTTAGAGATCGCTGCATCGAGCTCGACGTGTCCCGCCTACGCTCCTTCGTAAACGAACGCTCCCTCCCGGGGCGCTTCTCCTTGACCTCGCCGGCGCCGGACCTCGCATCCGCCGACCTTCACTTCCACGACCACCGGAGCTATGGCGACAAAGATCCCAACAACTTGACCGTACCCATGTGGAGCTGCCTCCGGCACCTGCACGGCGTGAGGGTCTTGAAGCTGCAGCTGGACTTCTATGCAGAGTACATCGCCGTGGACGCCGACGACGCTGACGACGGCGTCCTCGCCACGTTCCCTAACCTTGAGTACCTCGAGCTTGACGCCCATTGCAAGGATGATCACGACATGGCCACAGAATTGACAGTAGCAAGCGTCCTCCGATGGTGCCCTGCCATCCGTGAGCTACGGCTCAGGTTGTCAGTAGCCGATGCTGAAGGCCGCGTCAATGTGATCTACAACAGCAAACGGCACATGATCCATCACGCAAGAATGATGAGGAACAGCTTTGGACAGGATGTGCAAACCAAAATTTATGTTGATGTGACCAACATTACGACATCCTCGCCGTAG
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| Protein seq | MAAATSDHLSGLPDDLLRHIISLLSAKEGAATAVLSRRWRPLWRQAGTVNLDTEPYLYPAAYRGNNFPEHRRSAFVGHALAALAACESPRVLSLRLVSEEIEGGAAEERCAGVVDAVLDAPAAARVEELRVRCAVSWLCEHGSCERSSSSGTWRLRLGSLPCAAATLRVLHANDVGVERLGDGDGGVVLPLLEEMRLVKATVSPETLQGVIDAAPRLANLRDRCIELDVSRLRSFVNERSLPGRFSLTSPAPDLASADLHFHDHRSYGDKDPNNLTVPMWSCLRHLHGVRVLKLQLDFYAEYIAVDADDADDGVLATFPNLEYLELDAHCKDDHDMATELTVASVLRWCPAIRELRLRLSVADAEGRVNVIYNSKRHMIHHARMMRNSFGQDVQTKIYVDVTNITTSSP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24190 | SBH | 0.228994 | 0.070610 | 0.024320 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017440 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0017570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017370 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037860 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0282900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017050 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0304100 | RBH | 0.0003225 | 0 | 0.1281555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037820 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017640 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017370 | RBH | 0.0 | 0.0 | 0.0 |
