Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g24760 | OGI:09062800 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:14362932-14363611 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATCCGAACTTTCCATACCAGTCGCCGTCGTTCACCTTGGGTGATTTCGACCCCAACTACATGTCGAGGTTTGACGATACCTCCGGATCGGCTCCAACTCCACCATCTGTGGAGGAGGTACCGGATCATACGGCTGTCGTAAATTATATGAGGTTTTTGGAAGATATGAAGTAAAGTTTCAGGAAGTTCGCCAGCAGAGACCCCCTCCTATCCCCACTACAGGTAAGAAGAAGATACAGTGGGGTAGGATTTGGGGTGGATCGTCTTCAATCCAAGGTGGTGGCAGTTCGTCGGCTACAAGTGGAGACGCCTCTTCGCAAGTTGTGGCCGAAGAGTTGTCCGGTTATTTGGACAGCGACGCCATCCACCACGAAGCACAAGATTTCAACGTCCTCGGGTGGTGGAATGACCACAAGATAACATATCCTGTGCTTTCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTGTCGACGGTGTCCTCCGAATCGGCCTTCAGTCTATGCGGCCGAATCATCGAAGACCGGAGGACGACTCTGCGCAGCGACCACGTCGAAATGCTACTAAGCGTTAAAGACTGGGAGCTTGCTCGACAACATGCCCAATACACTGCAGACAACCAAGAATTGGCCGCCCAGTTCGAGCAACTCTACCTGGATCCAGACCAACCCCAGTAA
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| CDS seq | ATGGATCCGAACTTTCCATACCAGTCGCCGTCGTTCACCTTGGGTGATTTCGACCCCAACTACATGTCGAGGTTTGACGATACCTCCGGATCGGCTCCAACTCCACCATCTGTGGAGGAGGTTTTTGGAAGATATGAAGTAAAGTTTCAGGAAGTTCGCCAGCAGAGACCCCCTCCTATCCCCACTACAGGTAAGAAGAAGATACAGTGGGGTAGGATTTGGGGTGGATCGTCTTCAATCCAAGGTGGTGGCAGTTCGTCGGCTACAAGTGGAGACGCCTCTTCGCAAGTTGTGGCCGAAGAGTTGTCCGGTTATTTGGACAGCGACGCCATCCACCACGAAGCACAAGATTTCAACGTCCTCGGGTGGTGGAATGACCACAAGATAACATATCCTGTGCTTTCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTGTCGACGGTGTCCTCCGAATCGGCCTTCAGTCTATGCGGCCGAATCATCGAAGACCGGAGGACGACTCTGCGCAGCGACCACGTCGAAATGCTACTAAGCGTTAAAGACTGGGAGCTTGCTCGACAACATGCCCAATACACTGCAGACAACCAAGAATTGGCCGCCCAGTTCGAGCAACTCTACCTGGATCCAGACCAACCCCAGTAA
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| Protein seq | MDPNFPYQSPSFTLGDFDPNYMSRFDDTSGSAPTPPSVEEVFGRYEVKFQEVRQQRPPPIPTTGKKKIQWGRIWGGSSSIQGGGSSSATSGDASSQVVAEELSGYLDSDAIHHEAQDFNVLGWWNDHKITYPVLSKLARDVLTVPVSTVSSESAFSLCGRIIEDRRTTLRSDHVEMLLSVKDWELARQHAQYTADNQELAAQFEQLYLDPDQPQ |
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| Function | Putative AC9 transposase [UniProtKB/Swiss-Prot:P03010] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g24760 | LOC_Os02g24760.1 | Chr02 | 14362932 | 14363611 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATCCGAACTTTCCATACCAGTCGCCGTCGTTCACCTTGGGTGATTTCGACCCCAACTACATGTCGAGGTTTGACGATACCTCCGGATCGGCTCCAACTCCACCATCTGTGGAGGAGGTTTTTGGAAGATATGAAGTAAAGTTTCAGGAAGTTCGCCAGCAGAGACCCCCTCCTATCCCCACTACAGGTAAGAAGAAGATACAGTGGGGTAGGATTTGGGGTGGATCGTCTTCAATCCAAGGTGGTGGCAGTTCGTCGGCTACAAGTGGAGACGCCTCTTCGCAAGTTGTGGCCGAAGAGTTGTCCGGTTATTTGGACAGCGACGCCATCCACCACGAAGCACAAGATTTCAACGTCCTCGGGTGGTGGAATGACCACAAGATAACATATCCTGTGCTTTCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTGTCGACGGTGTCCTCCGAATCGGCCTTCAGTCTATGCGGCCGAATCATCGAAGACCGGAGGACGACTCTGCGCAGCGACCACGTCGAAATGCTACTAAGCGTTAAAGACTGGGAGCTTGCTCGACAACATGCCCAATACACTGCAGACAACCAAGAATTGGCCGCCCAGTTCGAGCAACTCTACCTGGATCCAGACCAACCCCAGTAA
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| Protein seq | MDPNFPYQSPSFTLGDFDPNYMSRFDDTSGSAPTPPSVEEVFGRYEVKFQEVRQQRPPPIPTTGKKKIQWGRIWGGSSSIQGGGSSSATSGDASSQVVAEELSGYLDSDAIHHEAQDFNVLGWWNDHKITYPVLSKLARDVLTVPVSTVSSESAFSLCGRIIEDRRTTLRSDHVEMLLSVKDWELARQHAQYTADNQELAAQFEQLYLDPDQPQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g63000 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010930 | SBH | 0.230638 | 12.880753 | 3.235260 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011050 | SBH | 0.126713 | 1.626477 | 0.855432 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010900 | SBH | 0.856493 | 3.690874 | 5.695251 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010760 | SBH | 0.052877 | 0.173306 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0360400 | RBH | 0.004079 | 0.0240175 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0192500 | SBH | 0.069803 | 0.139203 | 0.0086265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
