Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g22810 | OGI:02024230 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:13591787-13593154 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTAATCAAACTCAGACAGTGGAAGAGTTGTTACAACAGATGCGACGTTGGTACCAAATATACCAGATGCAACAGATGCAACGACAATGTCAGGAGTCACGTCAATGTCACCCACCGCCGGTGCGAGATCAGATGCCAGCCCGGAACCCGAATCAGAGTCAGAGTCAGGAGTTCCCAATATCGGCACCGAAGACCCATGTCAAAATGCGGTCCAGATCCCCGAAGATAACGACAGCCAAGTCAACGTCAGACCAAAGGAAAGTAAGTGCTACCTGTTATGACTGTGGTGAGCAAGGTCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCTAGGTCACCTGAAAAAGACGAGAAGCAGTGCCTAGGGAGTAACCAAGCTCCAAGTCAGTCTACCGACAAGAAGGATGGTACTTTGCAGCCCAACTCTGGAGCGAACAGGACAGTGATATGGAAGATGGATAATGGCAGGACCATGATCATCGCCGGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGAGGAGCGCGTCAGCTAACCCGTCATCTCATAAAGTACGGTCCGCCCAGACCCAAGGATGATGAATCAGGAGAACGGTTTTCTGCTGACGACGATGACGACAACGATGATGATAATGATGACAATGATGATGCGACCTTTAACAGTTTCAGGGAAAGAGAGTTGAAGTTCAAAGCATGTGCTAGATGTGGGATAGTCGGACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATATACCCATTACTCAGATGCATGCCCTTTAAGGAAGATCACATGTTTCTTGTGTGAAGGAACAGATCATGTGCCTAAGGACTGTCAGTTGAACGCGGTCATAGCTAAGACCAAGAAAGAACAAGGGGCAACCGTGCAACCCATTCGTCAACCAATGGCAATCGACAACAGCGGTCACAATCCTTCTGCTCTTCCTCCAATTCCACCCCCGGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCGCTGCTTGTTCCAGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATCCACAAGTTACCAGCACTGCCCACGACCCCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATCATCGTCAAGGGCACCGTAAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCTAG
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| CDS seq | ATGGCTAATCAAACTCAGACAGTGGAAGAGTTGTTACAACAGATGCGACGTTGGTACCAAATATACCAGATGCAACAGATGCAACGACAATGTCAGGAGTCACGTCAATGTCACCCACCGCCGGTGCGAGATCAGATGCCAGCCCGGAACCCGAATCAGAGTCAGAGTCAGGAGTTCCCAATATCGGCACCGAAGACCCATGTCAAAATGCGGTCCAGATCCCCGAAGATAACGACAGCCAAGTCAACGTCAGACCAAAGGAAAGTAAGTGCTACCTGTTATGACTGTGGTGAGCAAGGTCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCTAGGTCACCTGAAAAAGACGAGAAGCAGTGCCTAGGGAGTAACCAAGCTCCAAGTCAGTCTACCGACAAGAAGGATGGTACTTTGCAGCCCAACTCTGGAGCGAACAGGACAGTGATATGGAAGATGGATAATGGCAGGACCATGATCATCGCCGGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGAGGAGCGCGTCAGCTAACCCGTCATCTCATAAAGTACGGTCCGCCCAGACCCAAGGATGATGAATCAGGAGAACGGTTTTCTGCTGACGACGATGACGACAACGATGATGATAATGATGACAATGATGATGCGACCTTTAACAGTTTCAGGGAAAGAGAGTTGAAGTTCAAAGCATGTGCTAGATGTGGGATAGTCGGACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATATACCCATTACTCAGATGCATGCCCTTTAAGGAAGATCACATGTTTCTTGTGTGAAGGAACAGATCATGTGCCTAAGGACTGTCAGTTGAACGCGGTCATAGCTAAGACCAAGAAAGAACAAGGGGCAACCGTGCAACCCATTCGTCAACCAATGGCAATCGACAACAGCGGTCACAATCCTTCTGCTCTTCCTCCAATTCCACCCCCGGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCGCTGCTTGTTCCAGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATCCACAAGTTACCAGCACTGCCCACGACCCCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATCATCGTCAAGGGCACCGTAAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCTAG
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| Protein seq | MANQTQTVEELLQQMRRWYQIYQMQQMQRQCQESRQCHPPPVRDQMPARNPNQSQSQEFPISAPKTHVKMRSRSPKITTAKSTSDQRKVSATCYDCGEQGHYVRNCPWKVFARSPEKDEKQCLGSNQAPSQSTDKKDGTLQPNSGANRTVIWKMDNGRTMIIAGSEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPKDDESGERFSADDDDDNDDDNDDNDDATFNSFRERELKFKACARCGIVGHTASLCLPTCRCGEYTHYSDACPLRKITCFLCEGTDHVPKDCQLNAVIAKTKKEQGATVQPIRQPMAIDNSGHNPSALPPIPPPVEANHGRSNVARDVHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHCFSDCPLPRAAKAVRRDPQVTSTAHDPNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g22810 | LOC_Os02g22810.1 | Chr02 | 13591787 | 13593154 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTAATCAAACTCAGACAGTGGAAGAGTTGTTACAACAGATGCGACGTTGGTACCAAATATACCAGATGCAACAGATGCAACGACAATGTCAGGAGTCACGTCAATGTCACCCACCGCCGGTGCGAGATCAGATGCCAGCCCGGAACCCGAATCAGAGTCAGAGTCAGGAGTTCCCAATATCGGCACCGAAGACCCATGTCAAAATGCGGTCCAGATCCCCGAAGATAACGACAGCCAAGTCAACGTCAGACCAAAGGAAAGTAAGTGCTACCTGTTATGACTGTGGTGAGCAAGGTCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCTAGGTCACCTGAAAAAGACGAGAAGCAGTGCCTAGGGAGTAACCAAGCTCCAAGTCAGTCTACCGACAAGAAGGATGGTACTTTGCAGCCCAACTCTGGAGCGAACAGGACAGTGATATGGAAGATGGATAATGGCAGGACCATGATCATCGCCGGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGAGGAGCGCGTCAGCTAACCCGTCATCTCATAAAGTACGGTCCGCCCAGACCCAAGGATGATGAATCAGGAGAACGGTTTTCTGCTGACGACGATGACGACAACGATGATGATAATGATGACAATGATGATGCGACCTTTAACAGTTTCAGGGAAAGAGAGTTGAAGTTCAAAGCATGTGCTAGATGTGGGATAGTCGGACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATATACCCATTACTCAGATGCATGCCCTTTAAGGAAGATCACATGTTTCTTGTGTGAAGGAACAGATCATGTGCCTAAGGACTGTCAGTTGAACGCGGTCATAGCTAAGACCAAGAAAGAACAAGGGGCAACCGTGCAACCCATTCGTCAACCAATGGCAATCGACAACAGCGGTCACAATCCTTCTGCTCTTCCTCCAATTCCACCCCCGGTGGAAGCCAACCATGGAAGAAGCAACGTCGCTAGGGATGTTCATAAATCGCTGCTTGTTCCAGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATCCACAAGTTACCAGCACTGCCCACGACCCCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGGATCATCGTCAAGGGCACCGTAAGAGGCCGCATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCGCCAGCAGGGTAAGCAATGCTAG
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| Protein seq | MANQTQTVEELLQQMRRWYQIYQMQQMQRQCQESRQCHPPPVRDQMPARNPNQSQSQEFPISAPKTHVKMRSRSPKITTAKSTSDQRKVSATCYDCGEQGHYVRNCPWKVFARSPEKDEKQCLGSNQAPSQSTDKKDGTLQPNSGANRTVIWKMDNGRTMIIAGSEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPKDDESGERFSADDDDDNDDDNDDNDDATFNSFRERELKFKACARCGIVGHTASLCLPTCRCGEYTHYSDACPLRKITCFLCEGTDHVPKDCQLNAVIAKTKKEQGATVQPIRQPMAIDNSGHNPSALPPIPPPVEANHGRSNVARDVHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHCFSDCPLPRAAKAVRRDPQVTSTAHDPNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16860 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015140 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015320 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015210 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015070 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013910 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0156400 | SBH | 0 | 0.238585 | 0.323544 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013720 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0163700 | SBH | 0.0027825 | 0.006566 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0014270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0014170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013980 | RBH | 0.099634 | 0.585091 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014290 | RBH | 0.066153 | 0.0 | 0.149723 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012760 | RBH | 0.0 | 0.0 | 0.0 |
