Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g17030 | OGI:01071880 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:9734401-9734658 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACATCACTGACGTCCGCTCGCTCTCGTCGACGTTACCATCTTCTTCGAACTCATCGGCTGGTTGCTCGAGGAGAATGCCGGCCGGAGCGTCACTACTCGGTGCCCGCAAGGCGTCACCAGCTCCAGCTACGTCGCAAGCCATCTCGTCGGAGTTGTCGGGGATGTCGTCGAGCCGCCTGAGTCCGTAGACGACGCAACGCTGCCAAGCGATGCTCGCCATCATCCGCTGCTTGCCGGAGAAGGTTTTTTTTGTCAT |
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| CDS seq | ATGACAAAAAAAACCTTCTCCGGCAAGCAGCGGATGATGGCGAGCATCGCTTGGCAGCGTTGCGTCGTCTACGGACTCAGGCGGCTCGACGACATCCCCGACAACTCCGACGAGATGGCTTGCGACGTAGCTGGAGCTGGTGACGCCTTGCGGGCACCGAGTAGTGACGCTCCGGCCGGCATTCTCCTCGAGCAACCAGCCGATGAGTTCGAAGAAGATGGTAACGTCGACGAGAGCGAGCGGACGTCAGTGATGTAG |
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| Protein seq | MTKKTFSGKQRMMASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEEDGNVDESERTSVM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g17030 | LOC_Os02g17030.1 | Chr02 | 9734401 | 9734658 | - | MSU_osa1r7 | ||
| CDS seq | ATGACAAAAAAAACCTTCTCCGGCAAGCAGCGGATGATGGCGAGCATCGCTTGGCAGCGTTGCGTCGTCTACGGACTCAGGCGGCTCGACGACATCCCCGACAACTCCGACGAGATGGCTTGCGACGTAGCTGGAGCTGGTGACGCCTTGCGGGCACCGAGTAGTGACGCTCCGGCCGGCATTCTCCTCGAGCAACCAGCCGATGAGTTCGAAGAAGATGGTAACGTCGACGAGAGCGAGCGGACGTCAGTGATGTAG
More
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| Protein seq | MTKKTFSGKQRMMASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEEDGNVDESERTSVM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011800 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011800 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0011630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0386600 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011440 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0164800 | RBH | 0 | 0.005058 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022590 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011550 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0011550 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005350 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011730 | RBH | 0.0 | 0.0 | 0.0 |
