Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g16100 | OGI:02026230 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:9160563-9161201 | ||||||||
| Gene Symbol | rNBS41 | ||||||||||
| DNA seq | ATGAAGTATTTGCGGAGGTTGGAAGAGTACCATGTTAAGAAAGAGGGTATTGGGTTTGAGCTGAGTGAGCTAGGGGATTTGACAGAGCTTGGAGGTGAACTGAAAATATTTAATCTTGAGAACGTGACAACAAGGGAAGAAGCTAATGAAGCCAAGTTGATGATCAAAACAAATCTGAAAACATTGAAGCTAGTTTGGAGTGTGGTGCAACGGACAACACGATCTGATGTTCTTGACGGTCTCCAACCACCTCCTAATCTTAAAACACTTGTCATAATAAACCATGGTGGTTCGGTTGGTCCTAGTTGGTTGTGCAGTTATATTTGTGTAAAATACTTGAAATCATTCCATCTAGAGGGTGTCTGTTGGGGCAATCTCCCACTTTTTGGTCAACTGGTGCAGCTAGAGGAACTTACTTTGAAGAGTATTTCAGGCATACATCAGTTCGGACCTGATTTTGGTGGTGTAACACAAAAAAGTATCTCGCACTTGAAGAAAGTTGAACTTATTAATATGCCAGACCTTGTGGAGTGGGTTGGGGGAGCTCATTGCCATTTGTTTTCGAAGATTACAAGCATCAAGTGTGAAAATCTATCTATCTTCTATCTATCTATCTATCTATTATCTATTATATACTAA
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| CDS seq | ATGAAGTATTTGCGGAGGTTGGAAGAGTACCATGTTAAGAAAGAGGGTATTGGGTTTGAGCTGAGTGAGCTAGGGGATTTGACAGAGCTTGGAGGTGAACTGAAAATATTTAATCTTGAGAACGTGACAACAAGGGAAGAAGCTAATGAAGCCAAGTTGATGATCAAAACAAATCTGAAAACATTGAAGCTAGTTTGGAGTGTGGTGCAACGGACAACACGATCTGATGTTCTTGACGGTCTCCAACCACCTCCTAATCTTAAAACACTTGTCATAATAAACCATGGTGGTTCGGTTGGTCCTAGTTGGTTGTGCAGTTATATTTGTGTAAAATACTTGAAATCATTCCATCTAGAGGGTGTCTGTTGGGGCAATCTCCCACTTTTTGGTCAACTGGTGCAGCTAGAGGAACTTACTTTGAAGAGTATTTCAGGCATACATCAGTTCGGACCTGATTTTGGTGGTGTAACACAAAAAAGTATCTCGCACTTGAAGAAAGTTGAACTTATTAATATGCCAGACCTTGTGGAGTGGGTTGGGGGAGCTCATTGCCATTTGTTTTCGAAGATTACAAGCATCAAGTGTGAAAATCTATCTATCTTCTATCTATCTATCTATCTATTATCTATTATATACTAA
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| Protein seq | MKYLRRLEEYHVKKEGIGFELSELGDLTELGGELKIFNLENVTTREEANEAKLMIKTNLKTLKLVWSVVQRTTRSDVLDGLQPPPNLKTLVIINHGGSVGPSWLCSYICVKYLKSFHLEGVCWGNLPLFGQLVQLEELTLKSISGIHQFGPDFGGVTQKSISHLKKVELINMPDLVEWVGGAHCHLFSKITSIKCENLSIFYLSIYLLSIIY |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g16100 | LOC_Os02g16100.1 | Chr02 | 9160563 | 9161201 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGTATTTGCGGAGGTTGGAAGAGTACCATGTTAAGAAAGAGGGTATTGGGTTTGAGCTGAGTGAGCTAGGGGATTTGACAGAGCTTGGAGGTGAACTGAAAATATTTAATCTTGAGAACGTGACAACAAGGGAAGAAGCTAATGAAGCCAAGTTGATGATCAAAACAAATCTGAAAACATTGAAGCTAGTTTGGAGTGTGGTGCAACGGACAACACGATCTGATGTTCTTGACGGTCTCCAACCACCTCCTAATCTTAAAACACTTGTCATAATAAACCATGGTGGTTCGGTTGGTCCTAGTTGGTTGTGCAGTTATATTTGTGTAAAATACTTGAAATCATTCCATCTAGAGGGTGTCTGTTGGGGCAATCTCCCACTTTTTGGTCAACTGGTGCAGCTAGAGGAACTTACTTTGAAGAGTATTTCAGGCATACATCAGTTCGGACCTGATTTTGGTGGTGTAACACAAAAAAGTATCTCGCACTTGAAGAAAGTTGAACTTATTAATATGCCAGACCTTGTGGAGTGGGTTGGGGGAGCTCATTGCCATTTGTTTTCGAAGATTACAAGCATCAAGTGTGAAAATCTATCTATCTTCTATCTATCTATCTATCTATTATCTATTATATACTAA
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| Protein seq | MKYLRRLEEYHVKKEGIGFELSELGDLTELGGELKIFNLENVTTREEANEAKLMIKTNLKTLKLVWSVVQRTTRSDVLDGLQPPPNLKTLVIINHGGSVGPSWLCSYICVKYLKSFHLEGVCWGNLPLFGQLVQLEELTLKSISGIHQFGPDFGGVTQKSISHLKKVELINMPDLVEWVGGAHCHLFSKITSIKCENLSIFYLSIYLLSIIY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0262800 | SBH | 0.685138 | 1.192483 | 0.394301 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g16270 | RBH | 0.463383 | 0.800270 | 0.101276 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0262800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011370 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011500 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011340 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0011210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011270 | SBH | 0.478965 | 0.000000 | 2.001482 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011110 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011210 | RBH | 0.0 | 2.682012 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011590 | RBH | 0.798827 | 2.569376 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0011210 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011560 | RBH | 0.0 | 0.0 | 0.089194 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011370 | RBH | 0.0 | 4.645555 | 0.0 |
