Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os02g16060 OGI:02026180 | 5/16 Nipponbare | IRGSP 1.0 | MSU Chr02:9136748-9140133
Gene Symbol -
DNA seq

ATGGAGGCAGCCATCGGCGCAGCGAGCTGGCTCGTCGACAAGGTGGTGACACAGCTGTCCGACGAGCTGGTGGCGGCTTACATAGCCAGCACCGAGCTCGGCCTCAACATGGAGCAGATCAAGAGGGACCTCATGTTTATGCAAGGGCTGCTCCATCATGCCCGGGAGAGGAGGGACAAGAGCAACCCTGGCCTGCAAGGGCTTCTAGAGGAACTCAGAAAGAAGGCTGATGAGGCTGAGGACGTGCTGGACGAGCTCCAGTACTTCATCATCCAGGACCAGATCGACGGCACCCATGAGGCCACCCCCGTGGTAGACGATGGCATCCGTGGCCAAGTCCTCCATGGCCGCCATGCTCTTCGTCACACCATCGGTAACTGCCTTTCATGCTTTTCTTCTTCTTCTTCTTCTTCTGTACCAGAGGATGCCAATTATCCACATCACACAGCCAAGTCCCGTAGTGATGAATCTGACTATGTTGGCAAGTTGACATTCAATCGAGTAGACATGTCCAAAAAAATCAAGTCGGTAATCGAGGGCATATATGACTTATGTAGCCATGTATCCAATTTGCTCAAAATTACCCAACCTGAAGAAAGAAGGGTTCTATCACTGAAGCGACCTCCCACCAGCTCAACAATTACACAGAATAAATTATATGGGCGGGAAGACATCTTTAACCAGACTCTTGATGACATGTGCACCATACGTAGTGAAACACTATCAGTTCTTCCCATAGTTGGCCCTGGTGGAATCGGAAAGACAACCTTTGCCCAACACCTGTACAATCACAAAAGAACAGAGGCACACTTCTCTGGCAACAAGACCTGGGTTTGTGTATCTACTAATTTTGATGTGGTTAGGCTCACCCAAGAAATCTTGATGTGCATATGTCAAAATAGAAATGAGGAAAGTAGCGGAGCACATGAAACATCCAACTTGGATCAGCTCCAAAAATCCATTGCAGAAAAATTGGATTCTAAAAGATTTTTACTTGTCTTGGATGATATGTGGAGATGCAGCAGTGAGGGTGAATGGGAAAGCCTACTAGCTCCATTGAAAACAGGAGAAGCCAAAGGAAGTATGGTTATTGTCACCACTCGTTTTCCATCTATAGCACAAATGGTAAAAACAACCAAGCCAATAGAACTGCAAGGTCTAGAGGATGATGAATTCTTCACATTCTTTGAAGAATGTATATTTGGTCAGGAAAAACCTGCGTGTTATGAAGATGAATTGATTGATATTGCAAGAAAAATTTCCAAGAAATTTAAGGGTTTCCCACTAGCAGCCAAAACCGTTGGTCGATTATTGAAGAATAACCTTTCCCAGGAAAGTTGGATGGAAGTTCATGAAAGAAATGAGTGGAAAAATCAGCAAGATGGTGATGGCATAATGCCAGCACTACAAATAAGCTATGACTACCTACCTTTCCATCTGAAAAAGTGTTTTTCTTATTGTTCCCTTTACCCTGAGGACTACCGGTTTGGTAATTTAGAGATTACTTATTTTTGGGAAGCATTAGGCATCATAGCTTATGGAGATCAAAATAATAAAGCTGACCATGTAGGATTAAAGTATTTGAACGAACTAGTAGGTAATGGTTTTCTCATGAAGGAAGGTGATGATAGTAGGCCATATTATGTAATGCACGACTTATTACATGATCTAGCACGAAATATTTCGTCACAAGAGTGCATTGACATAAGTTCATATAACTTTAGGTCTGATAGCATCCCACAATCTATTCGACATGTATCTATCACCTTACAATATGATGAGTATGACCAAAGTTTTGAGAGAGAATTAGAAAAATTCAAGACAAAAATAGACATAGTAAATTTGCGGACTTTGATGCTTTTTGGAAAAGGCAATGCAAACATGACCTTTTTCAAAGATTTGTTAAAAGAAACAAGAAGTCTTCGTGTTCTATTTATGCATGCAAACTCGCCCGAATCTTTCCCACATGACTTTTTCAAACTAATCCACCTTCGGTATCTAAAGTTGAAAATACCTTATGGCGTAGAACTATCTCTACCAAATGCAATAAGTAGATTTCATCACTTAAATTTTTTGGATCTAGGGAATAGTATATGTATTTTGCCAAAAGACATGAATCGTCTATTCAATTTACACCTCTTTCTTGCTAGAAAAGAACTTTGTTCCAATATTCCTGGGATTGGTAAAATGAAGTATTTACAGAGGTTGGAAGAGTACCATGTTAAGAAAGAAGACATTGGGTTTGATCTGAGTGAGCTAGGGGATTTGACAGAGCTTGGAGGTGAACTGACAATATTTAATCTTGAGAATGTGGCAACAACGGAAGAAGGTAATCAAGCCAAATTGCAGTTGAAAAGAAATTTGAGAAGATTGACGCTAATTTGGGGTGCGGTGCAACAGACGACAGGATCTGATGTTCTTGATGGCCTGCAACCACATTATAATCTTAGAGCACTTGGCATAATAAACCATGGTGGTCCCACTGGTCCTGGTTGGTTGTGTTCCGATATCTATCTATCTATTATATACTAAAAGTCCATTAAACTTTCTATAAACGCTCTCAAGCCGCCACGTGGCTTTCTACAAACGCTCCTAGGTCACCACGTGGCATTCTATAATCTCACCGTCGATTTTCTTTTAAATCGGTGGACCCACTAATTTTAACTATTAGATCTTCATTGAAAAAATAAATCTGGTGTCCCCACTATTTTTTAAAAAAATTGCCGTGTTTGCCATCGGGCAAGGAACGTAAGTTCTTTTTTTTTTCCCGGCGGCATACGATACGTACTCCACGTTCCACGTTAGTATTATTTTTTTCCTTTTTTTTATTTTGCAAACAGTTCTGGTGTCCCCACTATTTTTAAAAAAAATTGCCGTGTTTGCCATCGGGCAAGGAACGTAAGTTCTTTTTTTTCCCGGCGGCATACGATACGTACTCCACGTTCCACGTTAGTATTATTTTTTTCCTTTTTTTTATTTTGCAAACAGTACTTTTTCTTTACACCTTCTGAAAACAGTACTACTACTACGCACATCGTACATACACTAGGGGAGTTTAGGAGAAAGTGTTAATAGATATGTAAAATCACATCTTATCGATTTAAGTAAAAATCCATAGTTAAATATTTTTTCTTTTTCTTATAATTTTTAATAATTCTTTTAATTTAGAGATATGACATGTGGTAACCTACCAGCTTTTATATGAGTGTCACGTGGTAGCTTAATAGCGTTTCTAAAAAGTTTAATGGACTTATATATAGTAAAAGTTAATTTAACTTCCTATAAATACTCTCAAGCCGCCACATGGCCTTCTACAAACGTTCCTAAATCACCACGTGGCATTTTTTAATCACACCGTCAATTTTACGAAGGTAAAAAAAAAAAAA

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CDS seq

ATGGAGGCAGCCATCGGCGCAGCGAGCTGGCTCGTCGACAAGGTGGTGACACAGCTGTCCGACGAGCTGGTGGCGGCTTACATAGCCAGCACCGAGCTCGGCCTCAACATGGAGCAGATCAAGAGGGACCTCATGTTTATGCAAGGGCTGCTCCATCATGCCCGGGAGAGGAGGGACAAGAGCAACCCTGGCCTGCAAGGGCTTCTAGAGGAACTCAGAAAGAAGGCTGATGAGGCTGAGGACGTGCTGGACGAGCTCCAGTACTTCATCATCCAGGACCAGATCGACGGCACCCATGAGGCCACCCCCGTGGTAGACGATGGCATCCGTGGCCAAGTCCTCCATGGCCGCCATGCTCTTCGTCACACCATCGGTAACTGCCTTTCATGCTTTTCTTCTTCTTCTTCTTCTTCTGTACCAGAGGATGCCAATTATCCACATCACACAGCCAAGTCCCGTAGTGATGAATCTGACTATGTTGGCAAGTTGACATTCAATCGAGTAGACATGTCCAAAAAAATCAAGTCGGTAATCGAGGGCATATATGACTTATGTAGCCATGTATCCAATTTGCTCAAAATTACCCAACCTGAAGAAAGAAGGGTTCTATCACTGAAGCGACCTCCCACCAGCTCAACAATTACACAGAATAAATTATATGGGCGGGAAGACATCTTTAACCAGACTCTTGATGACATGTGCACCATACGTAGTGAAACACTATCAGTTCTTCCCATAGTTGGCCCTGGTGGAATCGGAAAGACAACCTTTGCCCAACACCTGTACAATCACAAAAGAACAGAGGCACACTTCTCTGGCAACAAGACCTGGGTTTGTGTATCTACTAATTTTGATGTGGTTAGGCTCACCCAAGAAATCTTGATGTGCATATGTCAAAATAGAAATGAGGAAAGTAGCGGAGCACATGAAACATCCAACTTGGATCAGCTCCAAAAATCCATTGCAGAAAAATTGGATTCTAAAAGATTTTTACTTGTCTTGGATGATATGTGGAGATGCAGCAGTGAGGGTGAATGGGAAAGCCTACTAGCTCCATTGAAAACAGGAGAAGCCAAAGGAAGTATGGTTATTGTCACCACTCGTTTTCCATCTATAGCACAAATGGTAAAAACAACCAAGCCAATAGAACTGCAAGGTCTAGAGGATGATGAATTCTTCACATTCTTTGAAGAATGTATATTTGGTCAGGAAAAACCTGCGTGTTATGAAGATGAATTGATTGATATTGCAAGAAAAATTTCCAAGAAATTTAAGGGTTTCCCACTAGCAGCCAAAACCGTTGGTCGATTATTGAAGAATAACCTTTCCCAGGAAAGTTGGATGGAAGTTCATGAAAGAAATGAGTGGAAAAATCAGCAAGATGGTGATGGCATAATGCCAGCACTACAAATAAGCTATGACTACCTACCTTTCCATCTGAAAAAGTGTTTTTCTTATTGTTCCCTTTACCCTGAGGACTACCGGTTTGGTAATTTAGAGATTACTTATTTTTGGGAAGCATTAGGCATCATAGCTTATGGAGATCAAAATAATAAAGCTGACCATGTAGGATTAAAGTATTTGAACGAACTAGTAGGTAATGGTTTTCTCATGAAGGAAGGTGATGATAGTAGGCCATATTATGTAATGCACGACTTATTACATGATCTAGCACGAAATATTTCGTCACAAGAGTGCATTGACATAAGTTCATATAACTTTAGGTCTGATAGCATCCCACAATCTATTCGACATGTATCTATCACCTTACAATATGATGAGTATGACCAAAGTTTTGAGAGAGAATTAGAAAAATTCAAGACAAAAATAGACATAGTAAATTTGCGGACTTTGATGCTTTTTGGAAAAGGCAATGCAAACATGACCTTTTTCAAAGATTTGTTAAAAGAAACAAGAAGTCTTCGTGTTCTATTTATGCATGCAAACTCGCCCGAATCTTTCCCACATGACTTTTTCAAACTAATCCACCTTCGGTATCTAAAGTTGAAAATACCTTATGGCGTAGAACTATCTCTACCAAATGCAATAAGTAGATTTCATCACTTAAATTTTTTGGATCTAGGGAATAGTATATGTATTTTGCCAAAAGACATGAATCGTCTATTCAATTTACACCTCTTTCTTGCTAGAAAAGAACTTTGTTCCAATATTCCTGGGATTGGTAAAATGAAGTATTTACAGAGGTTGGAAGAGTACCATGTTAAGAAAGAAGACATTGGGTTTGATCTGAGTGAGCTAGGGGATTTGACAGAGCTTGGAGGTGAACTGACAATATTTAATCTTGAGAATGTGGCAACAACGGAAGAAGGTAATCAAGCCAAATTGCAGTTGAAAAGAAATTTGAGAAGATTGACGCTAATTTGGGGTGCGGTGCAACAGACGACAGGATCTGATGTTCTTGATGGCCTGCAACCACATTATAATCTTAGAGCACTTGGCATAATAAACCATGGTGGTCCCACTGGTCCTGGTTGGTTGTGTTCCGATATCTATCTATCTATTATATACTAA

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Protein seq

MEAAIGAASWLVDKVVTQLSDELVAAYIASTELGLNMEQIKRDLMFMQGLLHHARERRDKSNPGLQGLLEELRKKADEAEDVLDELQYFIIQDQIDGTHEATPVVDDGIRGQVLHGRHALRHTIGNCLSCFSSSSSSSVPEDANYPHHTAKSRSDESDYVGKLTFNRVDMSKKIKSVIEGIYDLCSHVSNLLKITQPEERRVLSLKRPPTSSTITQNKLYGREDIFNQTLDDMCTIRSETLSVLPIVGPGGIGKTTFAQHLYNHKRTEAHFSGNKTWVCVSTNFDVVRLTQEILMCICQNRNEESSGAHETSNLDQLQKSIAEKLDSKRFLLVLDDMWRCSSEGEWESLLAPLKTGEAKGSMVIVTTRFPSIAQMVKTTKPIELQGLEDDEFFTFFEECIFGQEKPACYEDELIDIARKISKKFKGFPLAAKTVGRLLKNNLSQESWMEVHERNEWKNQQDGDGIMPALQISYDYLPFHLKKCFSYCSLYPEDYRFGNLEITYFWEALGIIAYGDQNNKADHVGLKYLNELVGNGFLMKEGDDSRPYYVMHDLLHDLARNISSQECIDISSYNFRSDSIPQSIRHVSITLQYDEYDQSFERELEKFKTKIDIVNLRTLMLFGKGNANMTFFKDLLKETRSLRVLFMHANSPESFPHDFFKLIHLRYLKLKIPYGVELSLPNAISRFHHLNFLDLGNSICILPKDMNRLFNLHLFLARKELCSNIPGIGKMKYLQRLEEYHVKKEDIGFDLSELGDLTELGGELTIFNLENVATTEEGNQAKLQLKRNLRRLTLIWGAVQQTTGSDVLDGLQPHYNLRALGIINHGGPTGPGWLCSDIYLSIIY

Function Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os02g16060 LOC_Os02g16060.1 Chr02 9136748 9140133 + MSU_osa1r7
CDS seq

ATGGAGGCAGCCATCGGCGCAGCGAGCTGGCTCGTCGACAAGGTGGTGACACAGCTGTCCGACGAGCTGGTGGCGGCTTACATAGCCAGCACCGAGCTCGGCCTCAACATGGAGCAGATCAAGAGGGACCTCATGTTTATGCAAGGGCTGCTCCATCATGCCCGGGAGAGGAGGGACAAGAGCAACCCTGGCCTGCAAGGGCTTCTAGAGGAACTCAGAAAGAAGGCTGATGAGGCTGAGGACGTGCTGGACGAGCTCCAGTACTTCATCATCCAGGACCAGATCGACGGCACCCATGAGGCCACCCCCGTGGTAGACGATGGCATCCGTGGCCAAGTCCTCCATGGCCGCCATGCTCTTCGTCACACCATCGGTAACTGCCTTTCATGCTTTTCTTCTTCTTCTTCTTCTTCTGTACCAGAGGATGCCAATTATCCACATCACACAGCCAAGTCCCGTAGTGATGAATCTGACTATGTTGGCAAGTTGACATTCAATCGAGTAGACATGTCCAAAAAAATCAAGTCGGTAATCGAGGGCATATATGACTTATGTAGCCATGTATCCAATTTGCTCAAAATTACCCAACCTGAAGAAAGAAGGGTTCTATCACTGAAGCGACCTCCCACCAGCTCAACAATTACACAGAATAAATTATATGGGCGGGAAGACATCTTTAACCAGACTCTTGATGACATGTGCACCATACGTAGTGAAACACTATCAGTTCTTCCCATAGTTGGCCCTGGTGGAATCGGAAAGACAACCTTTGCCCAACACCTGTACAATCACAAAAGAACAGAGGCACACTTCTCTGGCAACAAGACCTGGGTTTGTGTATCTACTAATTTTGATGTGGTTAGGCTCACCCAAGAAATCTTGATGTGCATATGTCAAAATAGAAATGAGGAAAGTAGCGGAGCACATGAAACATCCAACTTGGATCAGCTCCAAAAATCCATTGCAGAAAAATTGGATTCTAAAAGATTTTTACTTGTCTTGGATGATATGTGGAGATGCAGCAGTGAGGGTGAATGGGAAAGCCTACTAGCTCCATTGAAAACAGGAGAAGCCAAAGGAAGTATGGTTATTGTCACCACTCGTTTTCCATCTATAGCACAAATGGTAAAAACAACCAAGCCAATAGAACTGCAAGGTCTAGAGGATGATGAATTCTTCACATTCTTTGAAGAATGTATATTTGGTCAGGAAAAACCTGCGTGTTATGAAGATGAATTGATTGATATTGCAAGAAAAATTTCCAAGAAATTTAAGGGTTTCCCACTAGCAGCCAAAACCGTTGGTCGATTATTGAAGAATAACCTTTCCCAGGAAAGTTGGATGGAAGTTCATGAAAGAAATGAGTGGAAAAATCAGCAAGATGGTGATGGCATAATGCCAGCACTACAAATAAGCTATGACTACCTACCTTTCCATCTGAAAAAGTGTTTTTCTTATTGTTCCCTTTACCCTGAGGACTACCGGTTTGGTAATTTAGAGATTACTTATTTTTGGGAAGCATTAGGCATCATAGCTTATGGAGATCAAAATAATAAAGCTGACCATGTAGGATTAAAGTATTTGAACGAACTAGTAGGTAATGGTTTTCTCATGAAGGAAGGTGATGATAGTAGGCCATATTATGTAATGCACGACTTATTACATGATCTAGCACGAAATATTTCGTCACAAGAGTGCATTGACATAAGTTCATATAACTTTAGGTCTGATAGCATCCCACAATCTATTCGACATGTATCTATCACCTTACAATATGATGAGTATGACCAAAGTTTTGAGAGAGAATTAGAAAAATTCAAGACAAAAATAGACATAGTAAATTTGCGGACTTTGATGCTTTTTGGAAAAGGCAATGCAAACATGACCTTTTTCAAAGATTTGTTAAAAGAAACAAGAAGTCTTCGTGTTCTATTTATGCATGCAAACTCGCCCGAATCTTTCCCACATGACTTTTTCAAACTAATCCACCTTCGGTATCTAAAGTTGAAAATACCTTATGGCGTAGAACTATCTCTACCAAATGCAATAAGTAGATTTCATCACTTAAATTTTTTGGATCTAGGGAATAGTATATGTATTTTGCCAAAAGACATGAATCGTCTATTCAATTTACACCTCTTTCTTGCTAGAAAAGAACTTTGTTCCAATATTCCTGGGATTGGTAAAATGAAGTATTTACAGAGGTTGGAAGAGTACCATGTTAAGAAAGAAGACATTGGGTTTGATCTGAGTGAGCTAGGGGATTTGACAGAGCTTGGAGGTGAACTGACAATATTTAATCTTGAGAATGTGGCAACAACGGAAGAAGGTAATCAAGCCAAATTGCAGTTGAAAAGAAATTTGAGAAGATTGACGCTAATTTGGGGTGCGGTGCAACAGACGACAGGATCTGATGTTCTTGATGGCCTGCAACCACATTATAATCTTAGAGCACTTGGCATAATAAACCATGGTGGTCCCACTGGTCCTGGTTGGTTGTGTTCCGATATCTATCTATCTATTATATACTAA

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Protein seq

MEAAIGAASWLVDKVVTQLSDELVAAYIASTELGLNMEQIKRDLMFMQGLLHHARERRDKSNPGLQGLLEELRKKADEAEDVLDELQYFIIQDQIDGTHEATPVVDDGIRGQVLHGRHALRHTIGNCLSCFSSSSSSSVPEDANYPHHTAKSRSDESDYVGKLTFNRVDMSKKIKSVIEGIYDLCSHVSNLLKITQPEERRVLSLKRPPTSSTITQNKLYGREDIFNQTLDDMCTIRSETLSVLPIVGPGGIGKTTFAQHLYNHKRTEAHFSGNKTWVCVSTNFDVVRLTQEILMCICQNRNEESSGAHETSNLDQLQKSIAEKLDSKRFLLVLDDMWRCSSEGEWESLLAPLKTGEAKGSMVIVTTRFPSIAQMVKTTKPIELQGLEDDEFFTFFEECIFGQEKPACYEDELIDIARKISKKFKGFPLAAKTVGRLLKNNLSQESWMEVHERNEWKNQQDGDGIMPALQISYDYLPFHLKKCFSYCSLYPEDYRFGNLEITYFWEALGIIAYGDQNNKADHVGLKYLNELVGNGFLMKEGDDSRPYYVMHDLLHDLARNISSQECIDISSYNFRSDSIPQSIRHVSITLQYDEYDQSFERELEKFKTKIDIVNLRTLMLFGKGNANMTFFKDLLKETRSLRVLFMHANSPESFPHDFFKLIHLRYLKLKIPYGVELSLPNAISRFHHLNFLDLGNSICILPKDMNRLFNLHLFLARKELCSNIPGIGKMKYLQRLEEYHVKKEDIGFDLSELGDLTELGGELTIFNLENVATTEEGNQAKLQLKRNLRRLTLIWGAVQQTTGSDVLDGLQPHYNLRALGIINHGGPTGPGWLCSDIYLSIIY

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.073140 0.198276 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0261800 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g16270 SBH 0.463383 0.800270 0.101276
Nipponbare | IRGSP 1.0 | RAP-db Os02g0261800 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0011350 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0011490 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0011320 RBH 0.0 0.0 0.469055
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0011200 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0011270 SBH 0.478965 0.000000 2.001482
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0011110 SBH 0.0 0.000000 0.000000
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0011610 SBH 0.0 0.082382 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0011210 SBH 0.0 2.682012 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0011590 SBH 0.798827 2.569376 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0011530 SBH 0.000000 0.212229 0.199630
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0011210 SBH 0.0 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G011580 RBH 0.0 0.0 0.168358
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0011390 RBH 0.0 0.0 0.272729
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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