Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g15178 | OGI:02024480 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:8458526-8460664 | ||||||||
| Gene Symbol | GluB, GluB-1a, OsGluB-1a, GLUB1A | ||||||||||
| DNA seq | TCTATATATATCAATAAATTTTATATATAGCTTGGAGGGCCCATCGCGATGAGTTCGCCTAGGGCCCTCAAAATCATAGGACCGGCCCTGTCCACTATAGTCCATAATGGAATATCCATGGCATGAAGTAGGAAAATTAAGAAGTTTGTAACCTTTATTTAGTACTGATATCGAACAGAATCACCACCAAGTGTCATACTTGTGGTGTTTTATTTTACTCTACGCCGATACTAGTTCTCAATTACATTACTCTGAGGTCTCGCTTTCGGACTCATTCGATAATCCTGGGTAGTATTGTTGTTGAAATCTAGGAGTGAAGGCACCGTGCTCTTCTCCCCTGTTGTTCTTGAGGCTTCGGGCTTGCTCCCTTGAGATGCGATACGCATTAGCGACTACATCAACTGGCAAGGCACGGAATACTGAGTTTTTCCCTGCAAGGTGGCTGACGAAGGCGTTAGCGTTTGTCTTGATTGCGATATATTGGCATCCTTCACGCTCTGCTTTCTTCAAGACAGCATAATGTTGCGGAATGATCAATAATTGTCCTGGGCGAAGGACACCATCAAACACAGTCTTTCCAAAGTTACTAACGACTTGAACTCGAGATCGCCCTTGAATCATATAGACCAAACTATGAGCATTGACGTTCCAGAACGGCGAGAGAATAGCATTCTGTAGAAATCAGTAGAGAATAATGTTATATAAGCAACAAATCAAAGATCTTCCAAAAAAAATGAAGAGAACAAAACGGTGCTATAATAAATACCTGGTATAGGTTTACTCTGGTAGCGCTCATTTGGATGAGGTTAAGGATGGGGAACTTCTGACTATTGACACTTGTTATCCTTCCGGCACGTGGGTTGTATGAATCAGCACGACTAGGATTTTCAATGTTTACTCTCACCTTGATCGTGCAAAAGTTCTCCTCCAATCCGTTCCATCGAGAAGATGTTTGCTGTCGTTCACTGTATTGAACTTGTTGATATTGATCTTGTGCTTGTGCTTGTTCTTGCTGTTGTGTCAAAGTCGGTTTCAACAATTGAAGGCCATTCTTCACATGTATGATCTCTCCTCTTTGATCATTTTGGCTCTGTAGCCTCTTTGCTGCTACTGCGTTGATGCCTAAAGCCTCACTTAGCATCTCAACACCAAATCCGCTGAATATGTTTTGCCCAGAGTGTTGCTCAATTGAGCTACCATATACTTGTTGTTGTTGAGCCCGATTGTTGTTGCCGGCTAATAGGAACTCCTGAAATTTTTATCAATGAAAAATTTAATGTTTTACGCTATGAATTGCATTGTAAGAACATATGAAAAACATAGAAAATTACAACTTTGATGGAAATATTTGTTCAAAAAATTACCTTTTGCCTAGGTTCAAGCTGATTGGCGTTGTTGTTTACGTCATAAACATATACGGCAACAATAGGTGCATCACCATCATTGTAGAACCAATGTGCAACACCAGCTGGGAGTGCAACAATGTCTCCTTGCCTAAATTGATGAATCTTTTGGTGCTCATCTCTAAACTTTTGGCTCTGACTTTGGCCTTGAGATGAAAATTGTTGGAATTGTTGCTGGTAAGTCGCAGGGCAACCGGGGAAGGTTAAACCCATAGAACCTCTCCCTAAAAATTATAATGTTCACATAAGGTACATACAACATTAATTTGACCATGGAGATCATAACTACTAGTTGCATCGATAGAGTTCTCGATTATATTTATTAGGATACAAACCTTGGATGATGTAGACCACGCCAGGAATATTTGTGTATCGAGGTACCAAAAGGCCTTGAGGCTGAATGACACGTCGGATCACAAAAGTACCCGTGCACTGGAATAATTCATTCTTCTCATCGAAGTACTCAGTCACCCCAGCTTCTGACCTCACTTTCCGAAGTGGTTCAAATGCTTGTAGTCTATCAAATCTACACTCCCTAAAACTTCCTTGCCGAGGACTATGCCATGGGTTTGTGCTGGGATTAAATAGCTGGGCCATAGAACCATGGCATAATAGAAGAACACAAAAGTATATAGAAAACCGAGAGAAAACGGAACTCGCCATAGCTATTTGTACTTGCTTATGGAAACTTAAGCTAATTGATGTGAGTTCAAAGACAGACCAAGCTAGTTTATAT
More
|
||||||||||
| CDS seq | ATGGCGAGTTCCGTTTTCTCTCGGTTTTCTATATACTTTTGTGTTCTTCTATTATGCCATGGTTCTATGGCCCAGCTATTTAATCCCAGCACAAACCCATGGCATAGTCCTCGGCAAGGAAGTTTTAGGGAGTGTAGATTTGATAGACTACAAGCATTTGAACCACTTCGGAAAGTGAGGTCAGAAGCTGGGGTGACTGAGTACTTCGATGAGAAGAATGAATTATTCCAGTGCACGGGTACTTTTGTGATCCGACGTGTCATTCAGCCTCAAGGCCTTTTGGTACCTCGATACACAAATATTCCTGGCGTGGTCTACATCATCCAAGGGAGAGGTTCTATGGGTTTAACCTTCCCCGGTTGCCCTGCGACTTACCAGCAACAATTCCAACAATTTTCATCTCAAGGCCAAAGTCAGAGCCAAAAGTTTAGAGATGAGCACCAAAAGATTCATCAATTTAGGCAAGGAGACATTGTTGCACTCCCAGCTGGTGTTGCACATTGGTTCTACAATGATGGTGATGCACCTATTGTTGCCGTATATGTTTATGACGTAAACAACAACGCCAATCAGCTTGAACCTAGGCAAAAGGAGTTCCTATTAGCCGGCAACAACAATCGGGCTCAACAACAACAAGTATATGGTAGCTCAATTGAGCAACACTCTGGGCAAAACATATTCAGCGGATTTGGTGTTGAGATGCTAAGTGAGGCTTTAGGCATCAACGCAGTAGCAGCAAAGAGGCTACAGAGCCAAAATGATCAAAGAGGAGAGATCATACATGTGAAGAATGGCCTTCAATTGTTGAAACCGACTTTGACACAACAGCAAGAACAAGCACAAGCACAAGATCAATATCAACAAGTTCAATACAGTGAACGACAGCAAACATCTTCTCGATGGAACGGATTGGAGGAGAACTTTTGCACGATCAAGGTGAGAGTAAACATTGAAAATCCTAGTCGTGCTGATTCATACAACCCACGTGCCGGAAGGATAACAAGTGTCAATAGTCAGAAGTTCCCCATCCTTAACCTCATCCAAATGAGCGCTACCAGAGTAAACCTATACCAGAATGCTATTCTCTCGCCGTTCTGGAACGTCAATGCTCATAGTTTGGTCTATATGATTCAAGGGCGATCTCGAGTTCAAGTCGTTAGTAACTTTGGAAAGACTGTGTTTGATGGTGTCCTTCGCCCAGGACAATTATTGATCATTCCGCAACATTATGCTGTCTTGAAGAAAGCAGAGCGTGAAGGATGCCAATATATCGCAATCAAGACAAACGCTAACGCCTTCGTCAGCCACCTTGCAGGGAAAAACTCAGTATTCCGTGCCTTGCCAGTTGATGTAGTCGCTAATGCGTATCGCATCTCAAGGGAGCAAGCCCGAAGCCTCAAGAACAACAGGGGAGAAGAGCACGGTGCCTTCACTCCTAGATTTCAACAACAATACTACCCAGGATTATCGAATGAGTCCGAAAGCGAGACCTCAGAGTAA
More
|
||||||||||
| Protein seq | MASSVFSRFSIYFCVLLLCHGSMAQLFNPSTNPWHSPRQGSFRECRFDRLQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYTNIPGVVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNDGDAPIVAVYVYDVNNNANQLEPRQKEFLLAGNNNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSEALGINAVAAKRLQSQNDQRGEIIHVKNGLQLLKPTLTQQQEQAQAQDQYQQVQYSERQQTSSRWNGLEENFCTIKVRVNIENPSRADSYNPRAGRITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGRSRVQVVSNFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNSVFRALPVDVVANAYRISREQARSLKNNRGEEHGAFTPRFQQQYYPGLSNESESETSE |
||||||||||
| Function | Glutelin type-B 1 [UniProtKB/Swiss-Prot:P14323] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g15178 | LOC_Os02g15178.1 | Chr02 | 8458526 | 8460664 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGAGTTCCGTTTTCTCTCGGTTTTCTATATACTTTTGTGTTCTTCTATTATGCCATGGTTCTATGGCCCAGCTATTTAATCCCAGCACAAACCCATGGCATAGTCCTCGGCAAGGAAGTTTTAGGGAGTGTAGATTTGATAGACTACAAGCATTTGAACCACTTCGGAAAGTGAGGTCAGAAGCTGGGGTGACTGAGTACTTCGATGAGAAGAATGAATTATTCCAGTGCACGGGTACTTTTGTGATCCGACGTGTCATTCAGCCTCAAGGCCTTTTGGTACCTCGATACACAAATATTCCTGGCGTGGTCTACATCATCCAAGGGAGAGGTTCTATGGGTTTAACCTTCCCCGGTTGCCCTGCGACTTACCAGCAACAATTCCAACAATTTTCATCTCAAGGCCAAAGTCAGAGCCAAAAGTTTAGAGATGAGCACCAAAAGATTCATCAATTTAGGCAAGGAGACATTGTTGCACTCCCAGCTGGTGTTGCACATTGGTTCTACAATGATGGTGATGCACCTATTGTTGCCGTATATGTTTATGACGTAAACAACAACGCCAATCAGCTTGAACCTAGGCAAAAGGAGTTCCTATTAGCCGGCAACAACAATCGGGCTCAACAACAACAAGTATATGGTAGCTCAATTGAGCAACACTCTGGGCAAAACATATTCAGCGGATTTGGTGTTGAGATGCTAAGTGAGGCTTTAGGCATCAACGCAGTAGCAGCAAAGAGGCTACAGAGCCAAAATGATCAAAGAGGAGAGATCATACATGTGAAGAATGGCCTTCAATTGTTGAAACCGACTTTGACACAACAGCAAGAACAAGCACAAGCACAAGATCAATATCAACAAGTTCAATACAGTGAACGACAGCAAACATCTTCTCGATGGAACGGATTGGAGGAGAACTTTTGCACGATCAAGGTGAGAGTAAACATTGAAAATCCTAGTCGTGCTGATTCATACAACCCACGTGCCGGAAGGATAACAAGTGTCAATAGTCAGAAGTTCCCCATCCTTAACCTCATCCAAATGAGCGCTACCAGAGTAAACCTATACCAGAATGCTATTCTCTCGCCGTTCTGGAACGTCAATGCTCATAGTTTGGTCTATATGATTCAAGGGCGATCTCGAGTTCAAGTCGTTAGTAACTTTGGAAAGACTGTGTTTGATGGTGTCCTTCGCCCAGGACAATTATTGATCATTCCGCAACATTATGCTGTCTTGAAGAAAGCAGAGCGTGAAGGATGCCAATATATCGCAATCAAGACAAACGCTAACGCCTTCGTCAGCCACCTTGCAGGGAAAAACTCAGTATTCCGTGCCTTGCCAGTTGATGTAGTCGCTAATGCGTATCGCATCTCAAGGGAGCAAGCCCGAAGCCTCAAGAACAACAGGGGAGAAGAGCACGGTGCCTTCACTCCTAGATTTCAACAACAATACTACCCAGGATTATCGAATGAGTCCGAAAGCGAGACCTCAGAGTAA
More
|
|||||||
| Protein seq | MASSVFSRFSIYFCVLLLCHGSMAQLFNPSTNPWHSPRQGSFRECRFDRLQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYTNIPGVVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNDGDAPIVAVYVYDVNNNANQLEPRQKEFLLAGNNNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSEALGINAVAAKRLQSQNDQRGEIIHVKNGLQLLKPTLTQQQEQAQAQDQYQQVQYSERQQTSSRWNGLEENFCTIKVRVNIENPSRADSYNPRAGRITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGRSRVQVVSNFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNSVFRALPVDVVANAYRISREQARSLKNNRGEEHGAFTPRFQQQYYPGLSNESESETSE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 20.366346 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0249900 | SBH | 0.0 | 0.0 | 86.906532 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15169 | RBH | 0.0 | 0.0 | 20.549450 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0249800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010770 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010890 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010720 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010570 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010670 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0140300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010440 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0147300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010580 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010990 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010940 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010600 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010850 | SBH | 0.0 | 0.0 | 3.199569 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010640 | SBH | 0.0 | 0.0 | 0.0 |
