Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g15100 | OGI:02024320 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:8411434-8411967 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACACTGGAGGTGCCTGATCCTTGAGAGGAGTCTCCTTGCCAAGAGGCTCCACGCTGGCCCTGCAGAGAGGACACGTGGAGTGGGAGTGGAGCCACATGTCGATGCATCCGACGTGGAACAGGTGCTTGCACGCCGGCAGCTGCCGCACCGTCTCCCCTTCCTGCACGATGCTCAGGCACACCGCGCACTGCGCCCACCCACCGCCGCCGCCGCGCCCGCTGCCGCTGCCGTCGCCGCGGGGCGCCGCCTCGGCCCACTCTTCTCTGCGGTACACGAACGACGGCAGCGTGGCGACGGCGGACGCGCTGAGCCCGCCGCCGCCGAGGAAGAACGGCCTGGCCGCCACGTAGACGACGGTGCCGCCGCCGCGGCGGCGGCGGCGGCAGCAGAGGCACTCGCAGAGCACGATCATGAGGACGGAGACGGCGGTGGCGAAGAAGCCGATGCCGAGGAGGACGAGCGTGTCGTGCGTGCTGTACCCGCCCTGGTCCGTCGAGTACGGCAGCGAGTTGGAGCTCGACGACAGCGACAT
More
|
||||||||||
| CDS seq | ATGTCGCTGTCGTCGAGCTCCAACTCGCTGCCGTACTCGACGGACCAGGGCGGGTACAGCACGCACGACACGCTCGTCCTCCTCGGCATCGGCTTCTTCGCCACCGCCGTCTCCGTCCTCATGATCGTGCTCTGCGAGTGCCTCTGCTGCCGCCGCCGCCGCCGCGGCGGCGGCACCGTCGTCTACGTGGCGGCCAGGCCGTTCTTCCTCGGCGGCGGCGGGCTCAGCGCGTCCGCCGTCGCCACGCTGCCGTCGTTCGTGTACCGCAGAGAAGAGTGGGCCGAGGCGGCGCCCCGCGGCGACGGCAGCGGCAGCGGGCGCGGCGGCGGCGGTGGGTGGGCGCAGTGCGCGGTGTGCCTGAGCATCGTGCAGGAAGGGGAGACGGTGCGGCAGCTGCCGGCGTGCAAGCACCTGTTCCACGTCGGATGCATCGACATGTGGCTCCACTCCCACTCCACGTGTCCTCTCTGCAGGGCCAGCGTGGAGCCTCTTGGCAAGGAGACTCCTCTCAAGGATCAGGCACCTCCAGTGTAG
More
|
||||||||||
| Protein seq | MSLSSSSNSLPYSTDQGGYSTHDTLVLLGIGFFATAVSVLMIVLCECLCCRRRRRGGGTVVYVAARPFFLGGGGLSASAVATLPSFVYRREEWAEAAPRGDGSGSGRGGGGGWAQCAVCLSIVQEGETVRQLPACKHLFHVGCIDMWLHSHSTCPLCRASVEPLGKETPLKDQAPPV |
||||||||||
| Function | E3 ubiquitin-protein ligase ATL41 [UniProtKB/Swiss-Prot:Q9SLC3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g15100 | LOC_Os02g15100.1 | Chr02 | 8411434 | 8411967 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGCTGTCGTCGAGCTCCAACTCGCTGCCGTACTCGACGGACCAGGGCGGGTACAGCACGCACGACACGCTCGTCCTCCTCGGCATCGGCTTCTTCGCCACCGCCGTCTCCGTCCTCATGATCGTGCTCTGCGAGTGCCTCTGCTGCCGCCGCCGCCGCCGCGGCGGCGGCACCGTCGTCTACGTGGCGGCCAGGCCGTTCTTCCTCGGCGGCGGCGGGCTCAGCGCGTCCGCCGTCGCCACGCTGCCGTCGTTCGTGTACCGCAGAGAAGAGTGGGCCGAGGCGGCGCCCCGCGGCGACGGCAGCGGCAGCGGGCGCGGCGGCGGCGGTGGGTGGGCGCAGTGCGCGGTGTGCCTGAGCATCGTGCAGGAAGGGGAGACGGTGCGGCAGCTGCCGGCGTGCAAGCACCTGTTCCACGTCGGATGCATCGACATGTGGCTCCACTCCCACTCCACGTGTCCTCTCTGCAGGGCCAGCGTGGAGCCTCTTGGCAAGGAGACTCCTCTCAAGGATCAGGCACCTCCAGTGTAG
More
|
|||||||
| Protein seq | MSLSSSSNSLPYSTDQGGYSTHDTLVLLGIGFFATAVSVLMIVLCECLCCRRRRRGGGTVVYVAARPFFLGGGGLSASAVATLPSFVYRREEWAEAAPRGDGSGSGRGGGGGWAQCAVCLSIVQEGETVRQLPACKHLFHVGCIDMWLHSHSTCPLCRASVEPLGKETPLKDQAPPV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0178600 | SBH | 1.424589 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11460 | SBH | 0.0 | 0.0 | 0.575985 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0178600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010670 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010790 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010630 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010460 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010590 | SBH | 0.0 | 0.338724 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0139400 | RBH | 0.0075765 | 1.2287325 | 0.0014475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010350 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0146200 | SBH | 0 | 0.049194 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010860 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010500 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010900 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010860 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010520 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010760 | SBH | 0.0 | 0.0 | 0.151545 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010560 | SBH | 0.0 | 0.0 | 0.0 |
