Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g12110 | OGI:02068210 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:6298111-6298881 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAACGATCGCGAAACTGTAAGTCTGTTGAGCTTGTTCTAAACGATCGCGAAACGCCCTTAGGAAGTCATCCCGCTCCTGTAACGTCTGTTGAACTGCGGGCAGACGAGATGAACTCGGATCGTAGGCACGCAGCGTCGGCAGCTCGTGACAATATACGACGCGGAACGGCGATGTCCGAAGTGATGACTGATACGACATGTTGTAGCAATACACCGCGCACGGTTGCCATCGAAGCCATTGACACGGACGATTCCTAGTGAAACATCGAAGATACATCACGATGATCTTGTTAGTCACCTCGGACTGGCCATCGGATTGAGGGTGAAGGGCTGATGAAAGATTCGGCTGCACACCCGCCAACCGGAAAATTTCACGCCAAAAAGGGCTGCTGAAGACTGGATCTTGGTCGATGACAATGGAGACCGGAACACCGTGCAAGCAGACGATCTCCGCGAAGAAGGCAGCTGCTACCGATGTCGCCGTGTACGGATGAGAACGGGATGAAGTGGGCAACGTTACGATGACCGTCTTGCCATGTTCTCGCGGGAGCCCCTCGACGAAGTCCATAGCGATGTCAGCCCACTCCGCCGAAGGCACCGGCAAGGATTGCAGCAGGTCGGCTGGATGGAGGTGCTCCGTCTTGTTCTGTTGGCACGTGCGGCACGCGCGCACGAAATCTTGCACCGTCACTTTGTCCCGCGCGATATGGAAATACGCACAAAGGCGAGATAGGGTCTTTTGTGTTAGTATTTCAATGGTTACTCTCAT
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| CDS seq | ATGAGAGTAACCATTGAAATACTAACACAAAAGACCCTATCTCGCCTTTGTGCGTATTTCCATATCGCGCGGGACAAAGTGACGGTGCAAGATTTCGTGCGCGCGTGCCGCACGTGCCAACAGAACAAGACGGAGCACCTCCATCCAGCCGACCTGCTGCAATCCTTGCCGGTGCCTTCGGCGGAGTGGGCTGACATCGCTATGGACTTCGTCGAGGGGCTCCCGCGAGAACATGGCAAGACGGTCATCGTAACGTTGCCCACTTCATCCCGTTCTCATCCGTACACGGCGACATCGGTAGCAGCTGCCTTCTTCGCGGAGATCGTCTGCTTGCACGGTGTTCCGGTCTCCATTGTCATCGACCAAGATCCAGTCTTCAGCAGCCCTTTTTGGCGTGAAATTTTCCGGTTGGCGGGTGTGCAGCCGAATCTTTCATCAGCCCTTCACCCTCAATCCGATGGCCAGTCCGAGGTGACTAACAAGATCATCGTGATGTATCTTCGATGTTTCACTAGGAATCGTCCGTGTCAATGGCTTCGATGGCAACCGTGCGCGGTGTATTGCTACAACATGTCGTATCAGTCATCACTTCGGACATCGCCGTTCCGCGTCGTATATTGTCACGAGCTGCCGACGCTGCGTGCCTACGATCCGAGTTCATCTCGTCTGCCCGCAGTTCAACAGACGTTACAGGAGCGGGATGACTTCCTAAGGGCGTTTCGCGATCGTTTAGAACAAGCTCAACAGACTTACAGTTTCGCGATCGTTTAG
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| Protein seq | MRVTIEILTQKTLSRLCAYFHIARDKVTVQDFVRACRTCQQNKTEHLHPADLLQSLPVPSAEWADIAMDFVEGLPREHGKTVIVTLPTSSRSHPYTATSVAAAFFAEIVCLHGVPVSIVIDQDPVFSSPFWREIFRLAGVQPNLSSALHPQSDGQSEVTNKIIVMYLRCFTRNRPCQWLRWQPCAVYCYNMSYQSSLRTSPFRVVYCHELPTLRAYDPSSSRLPAVQQTLQERDDFLRAFRDRLEQAQQTYSFAIV |
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| Function | Transposon Ty3-G Gag-Pol polyprotein [UniProtKB/Swiss-Prot:Q99315] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g12110 | LOC_Os02g12110.1 | Chr02 | 6298111 | 6298881 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGAGTAACCATTGAAATACTAACACAAAAGACCCTATCTCGCCTTTGTGCGTATTTCCATATCGCGCGGGACAAAGTGACGGTGCAAGATTTCGTGCGCGCGTGCCGCACGTGCCAACAGAACAAGACGGAGCACCTCCATCCAGCCGACCTGCTGCAATCCTTGCCGGTGCCTTCGGCGGAGTGGGCTGACATCGCTATGGACTTCGTCGAGGGGCTCCCGCGAGAACATGGCAAGACGGTCATCGTAACGTTGCCCACTTCATCCCGTTCTCATCCGTACACGGCGACATCGGTAGCAGCTGCCTTCTTCGCGGAGATCGTCTGCTTGCACGGTGTTCCGGTCTCCATTGTCATCGACCAAGATCCAGTCTTCAGCAGCCCTTTTTGGCGTGAAATTTTCCGGTTGGCGGGTGTGCAGCCGAATCTTTCATCAGCCCTTCACCCTCAATCCGATGGCCAGTCCGAGGTGACTAACAAGATCATCGTGATGTATCTTCGATGTTTCACTAGGAATCGTCCGTGTCAATGGCTTCGATGGCAACCGTGCGCGGTGTATTGCTACAACATGTCGTATCAGTCATCACTTCGGACATCGCCGTTCCGCGTCGTATATTGTCACGAGCTGCCGACGCTGCGTGCCTACGATCCGAGTTCATCTCGTCTGCCCGCAGTTCAACAGACGTTACAGGAGCGGGATGACTTCCTAAGGGCGTTTCGCGATCGTTTAGAACAAGCTCAACAGACTTACAGTTTCGCGATCGTTTAG
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| Protein seq | MRVTIEILTQKTLSRLCAYFHIARDKVTVQDFVRACRTCQQNKTEHLHPADLLQSLPVPSAEWADIAMDFVEGLPREHGKTVIVTLPTSSRSHPYTATSVAAAFFAEIVCLHGVPVSIVIDQDPVFSSPFWREIFRLAGVQPNLSSALHPQSDGQSEVTNKIIVMYLRCFTRNRPCQWLRWQPCAVYCYNMSYQSSLRTSPFRVVYCHELPTLRAYDPSSSRLPAVQQTLQERDDFLRAFRDRLEQAQQTYSFAIV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.216969 | 1.376140 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0272800 | SBH | 1.659576 | 0.996415 | 3.277498 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12220 | RBH | 0.070433 | 0.315816 | 0.236506 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012111 | SBH | 0.182933 | 2.695740 | 2.795457 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011981 | SBH | 0.908975 | 3.743392 | 9.726171 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0106000 | SBH | 0.6131475 | 2.1251565 | 2.289213 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0004800 | SBH | 0.018788 | 0.003451 | 0.0175655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
