Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g07940 | OGI:02011820 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:4157108-4158505 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGAACAAGCAAAGGCGCACAACCTCTCTCCGAGTGTTAGCGGTGACGACGGGGAGCCAAACCCACGCCGTCGAGCTCGTACTCCACCGCCCCCTCCACGCCAAAGTCCTAGGCGGGAGGAGGCGCTCGAGAGGGTCGAAGGATCTGCGACTTCGACATCCACGGGTGATGGGGAAGTGCGGCGAGATGGGGAGCGTCGTCTCCTCGTCTACGGCGACGGCAGCACGCCCCAGGGCGCGCTCCAAGCTGCGGGCGCGCTCCTACGTCACCCGCCCATTGTCCCTGACCCGGAGTCTCCAGCCCAACGTTGGCTGGACGACGTGGCCAACTTGGTCATGACGGCACGGCAGCGCCTAGGTGCTGGTGGGCGGTCCTCCGCCACCAAGACCTCTGGCGCTGCTACCACCGGCTCCGTGTCGTCAAGGCGGAGGGCGCGGCGAGCGGCGGCTGTTGCTCGCCATTCGGCCGCCACTCCTTCGTCAGCGCCTCCGACCCAGGAAGATCTGCGTGGGGGGCCGGATGCCCGCATCAGTATCGAGCGCCGGCGTAATGGCCGACGTGCTGCCCACGCAACGGAGGGCGCCTCCTCGTCCGGAGTGTCACATCAACACGGACGCGGGGATCAGCCCTCCGTGCCCCCGGTTGGTGGTGTCGGCTGTAGAGCCTTTGTGGCGAGCCTTCGGAACGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCGCCGAAAAATATGACGGGAGCGTCAACCCCGCCGAGTTTCTCCAGGTCTACACGACCGGGATCGAGGCCGCCGGGGGTGACGACAGGGTCATGGCGAATTTCTTTCCCATGGCCCTGAAGGGACAGGCACGGGGTTGGCTAATGAACTTGCCACCCGCGTCCGTCCACTCTTGGGAGGATTTGTGCCAACAGTTCACCATGAACTTTCAAGGCACATATCCGCGCCCAGGTGAAGAAGCGGACTTACATGCAGTCCAGCGAAGGGATGATGAGTCACTTCGCTCATACATTCAGCGGTTCTGTCAAGTCCGCAACACCATACCATGCATCCCTGCACACGCGGTGATCTACGCGTTCAGGGGGGGTGTGCGGCACAACCGCATGCTCGAAAAGATCGCCTCCAAAGAGCCCCAGACTACCGCGGAGCTTTTTCAGCTCGCGGACCGAGTGGCTCGCAAGGAGGAGGCCTGGACTTGGAACCCCTCCGGTTCCGGTGTGGCAGCTTCGGCCGCCCCCGGGTCCGCCGCTCGGTCAGGGCGGCGGGACAGGAGGAGGAAGAAGAGGTCGGCCCATTCCGACGACGAGGGTCATGTCCTCGCCGTCGAAGGCATTTCGCTGGCCACCCGAAAGAGGAGGCCTGCGAGCGACAAAAAGAAGGAAGCCGACGCTCCCTGA
More
|
||||||||||
| CDS seq | ATGGCTGAACAAGCAAAGGCGCACAACCTCTCTCCGAGTGTTAGCGGTGACGACGGGGAGCCAAACCCACGCCGTCGAGCTCGTACTCCACCGCCCCCTCCACGCCAAAGTCCTAGGCGGGAGGAGGCGCTCGAGAGGGTCGAAGGATCTGCGACTTCGACATCCACGGGTGATGGGGAAGTGCGGCGAGATGGGGAGCGTCGTCTCCTCGTCTACGGCGACGGCAGCACGCCCCAGGGCGCGCTCCAAGCTGCGGGCGCGCTCCTACGTCACCCGCCCATTGTCCCTGACCCGGAGTCTCCAGCCCAACGTTGGCTGGACGACGTGGCCAACTTGGTCATGACGGCACGGCAGCGCCTAGGTGCTGGTGGGCGGTCCTCCGCCACCAAGACCTCTGGCGCTGCTACCACCGGCTCCGTGTCGTCAAGGCGGAGGGCGCGGCGAGCGGCGGCTGTTGCTCGCCATTCGGCCGCCACTCCTTCGTCAGCGCCTCCGACCCAGGAAGATCTGCGTGGGGGGCCGGATGCCCGCATCAGTATCGAGCGCCGGCGTAATGGCCGACGTGCTGCCCACGCAACGGAGGGCGCCTCCTCGTCCGGAGTGTCACATCAACACGGACGCGGGGATCAGCCCTCCGTGCCCCCGGTTGGTGGTGTCGGCTGTAGAGCCTTTGTGGCGAGCCTTCGGAACGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCGCCGAAAAATATGACGGGAGCGTCAACCCCGCCGAGTTTCTCCAGGTCTACACGACCGGGATCGAGGCCGCCGGGGGTGACGACAGGGTCATGGCGAATTTCTTTCCCATGGCCCTGAAGGGACAGGCACGGGGTTGGCTAATGAACTTGCCACCCGCGTCCGTCCACTCTTGGGAGGATTTGTGCCAACAGTTCACCATGAACTTTCAAGGCACATATCCGCGCCCAGGTGAAGAAGCGGACTTACATGCAGTCCAGCGAAGGGATGATGAGTCACTTCGCTCATACATTCAGCGGTTCTGTCAAGTCCGCAACACCATACCATGCATCCCTGCACACGCGGTGATCTACGCGTTCAGGGGGGGTGTGCGGCACAACCGCATGCTCGAAAAGATCGCCTCCAAAGAGCCCCAGACTACCGCGGAGCTTTTTCAGCTCGCGGACCGAGTGGCTCGCAAGGAGGAGGCCTGGACTTGGAACCCCTCCGGTTCCGGTGTGGCAGCTTCGGCCGCCCCCGGGTCCGCCGCTCGGTCAGGGCGGCGGGACAGGAGGAGGAAGAAGAGGTCGGCCCATTCCGACGACGAGGGTCATGTCCTCGCCGTCGAAGGCATTTCGCTGGCCACCCGAAAGAGGAGGCCTGCGAGCGACAAAAAGAAGGAAGCCGACGCTCCCTGA
More
|
||||||||||
| Protein seq | MAEQAKAHNLSPSVSGDDGEPNPRRRARTPPPPPRQSPRREEALERVEGSATSTSTGDGEVRRDGERRLLVYGDGSTPQGALQAAGALLRHPPIVPDPESPAQRWLDDVANLVMTARQRLGAGGRSSATKTSGAATTGSVSSRRRARRAAAVARHSAATPSSAPPTQEDLRGGPDARISIERRRNGRRAAHATEGASSSGVSHQHGRGDQPSVPPVGGVGCRAFVASLRNVRWPPRFRPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHAVQRRDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAARSGRRDRRRKKRSAHSDDEGHVLAVEGISLATRKRRPASDKKKEADAP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g07940 | LOC_Os02g07940.1 | Chr02 | 4157108 | 4158505 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTGAACAAGCAAAGGCGCACAACCTCTCTCCGAGTGTTAGCGGTGACGACGGGGAGCCAAACCCACGCCGTCGAGCTCGTACTCCACCGCCCCCTCCACGCCAAAGTCCTAGGCGGGAGGAGGCGCTCGAGAGGGTCGAAGGATCTGCGACTTCGACATCCACGGGTGATGGGGAAGTGCGGCGAGATGGGGAGCGTCGTCTCCTCGTCTACGGCGACGGCAGCACGCCCCAGGGCGCGCTCCAAGCTGCGGGCGCGCTCCTACGTCACCCGCCCATTGTCCCTGACCCGGAGTCTCCAGCCCAACGTTGGCTGGACGACGTGGCCAACTTGGTCATGACGGCACGGCAGCGCCTAGGTGCTGGTGGGCGGTCCTCCGCCACCAAGACCTCTGGCGCTGCTACCACCGGCTCCGTGTCGTCAAGGCGGAGGGCGCGGCGAGCGGCGGCTGTTGCTCGCCATTCGGCCGCCACTCCTTCGTCAGCGCCTCCGACCCAGGAAGATCTGCGTGGGGGGCCGGATGCCCGCATCAGTATCGAGCGCCGGCGTAATGGCCGACGTGCTGCCCACGCAACGGAGGGCGCCTCCTCGTCCGGAGTGTCACATCAACACGGACGCGGGGATCAGCCCTCCGTGCCCCCGGTTGGTGGTGTCGGCTGTAGAGCCTTTGTGGCGAGCCTTCGGAACGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCGCCGAAAAATATGACGGGAGCGTCAACCCCGCCGAGTTTCTCCAGGTCTACACGACCGGGATCGAGGCCGCCGGGGGTGACGACAGGGTCATGGCGAATTTCTTTCCCATGGCCCTGAAGGGACAGGCACGGGGTTGGCTAATGAACTTGCCACCCGCGTCCGTCCACTCTTGGGAGGATTTGTGCCAACAGTTCACCATGAACTTTCAAGGCACATATCCGCGCCCAGGTGAAGAAGCGGACTTACATGCAGTCCAGCGAAGGGATGATGAGTCACTTCGCTCATACATTCAGCGGTTCTGTCAAGTCCGCAACACCATACCATGCATCCCTGCACACGCGGTGATCTACGCGTTCAGGGGGGGTGTGCGGCACAACCGCATGCTCGAAAAGATCGCCTCCAAAGAGCCCCAGACTACCGCGGAGCTTTTTCAGCTCGCGGACCGAGTGGCTCGCAAGGAGGAGGCCTGGACTTGGAACCCCTCCGGTTCCGGTGTGGCAGCTTCGGCCGCCCCCGGGTCCGCCGCTCGGTCAGGGCGGCGGGACAGGAGGAGGAAGAAGAGGTCGGCCCATTCCGACGACGAGGGTCATGTCCTCGCCGTCGAAGGCATTTCGCTGGCCACCCGAAAGAGGAGGCCTGCGAGCGACAAAAAGAAGGAAGCCGACGCTCCCTGA
More
|
|||||||
| Protein seq | MAEQAKAHNLSPSVSGDDGEPNPRRRARTPPPPPRQSPRREEALERVEGSATSTSTGDGEVRRDGERRLLVYGDGSTPQGALQAAGALLRHPPIVPDPESPAQRWLDDVANLVMTARQRLGAGGRSSATKTSGAATTGSVSSRRRARRAAAVARHSAATPSSAPPTQEDLRGGPDARISIERRRNGRRAAHATEGASSSGVSHQHGRGDQPSVPPVGGVGCRAFVASLRNVRWPPRFRPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHAVQRRDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAARSGRRDRRRKKRSAHSDDEGHVLAVEGISLATRKRRPASDKKKEADAP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43460 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0065000 | RBH | 1.449216 | 0.852455 | 0.0383295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0067700 | SBH | 1.5315175 | 0.83096 | 0.484365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
