Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g06820 | OGI:07006270 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:3440051-3441653 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACAGACCATGGAAACACATGTCTTTTTGGGTGTGCATTCCTAGGAGATGAGACAACTGAGACATTTAAGTGGGTTTTTGAGACATTCAGGACAGCTATGAGAGGCAAAGATCCTATTAGCATAATAACAGACCAAGACAGTGCAATGAGATCTGCAATAGGGCAAGTGTTCAAGAAAACCAAGCATAGGAACTGCCTATTTCATATCAAGAAAATTGCAGAGAGAGAACAGGTAACACATTCACTGACAGTACAAAGAAAGATCTATACAATGAATTTGAAGACATTGTTAACAATTGTTTGACAGAGCATGAGTTTGAAACCTTGTGACACAAATGATTGATAAATATGAGCTGCACAATGTGAAATACTTGCAATCAATTTGGGATACAAGACAAAGCTGCATCCCTGTCTATTGCAAGAATGACTTTTTCCCATTTATTCAAAGCACAACGCTAAGTGAAGGGACTAATGCAAGGTTTAAAAGAGGAGTTGGGCCAAGGCATAGTGTTACAAGCTTCCTAAAGGAATATGACAGAATAAATGACACTATATTTGATACACTGTATTGGAATGCCTATAACTCAAACACAAAACAACCCAAAAATCTATGGTCAGGATACTACATAGAAGAGCAAGCTTCGGAGATGTACAATTTAAGCATTTTCAAAAAGTTCCAGCTTGAATTAAAGAAATCAACAAGGCTTCAGGTGACAGTGCTTGAACATGGCAAAGCATACTTGGTATTCTTGGCTCTAAATCAAAAAAGAAGGAATGGAGAGCAAGGAATTATGTAGTTCTCACAGACTTACAAAATGATGAGTACTCCTGTGTGTGTGCAAAGTTCTCGAAGGATGGAATCCTTTGCTCCCATATCCTGAAAGTAATGTTGGACCTAAATGTTAGCAAAATTCCGAACAAATACATCATAGAAAGGTGGAGGAAGAAAGACAACAACATAACAGGTCTATTCAGAGGAGAATCAAGTAATGGACCTAATGCTATGCTAATGTACAACGTGCTCTCGCAAAAAATGTCAGAATTAGCATCAAAGGGTTGTAAGAGACCAGAGATATATAGTTACCTGGTTGGAGAAGTGGAGAAGTTGGATAGCATAGTGGACAGCATGATTCTAGAAGCCCATGGAAATCACACATGCCAGGTCCAAAGTAATGCAACAAACAACGCTGTTGTTGAGGGGCAACAACATGGGAATCTGAATGATGAAGAGGAAATTGAAGACCCAGAGCAAGCTAATACAAAAGGCAGGAAATCAATAAGGCAGAAAAGATTGGTGGAAAAGATTATGGATAAAGAATGCAAAAAATACAAAGGCAAGAGTAAGGGGAAGAATAAAACATTGATCTTAACTTTTCCACAAAATTGTCGATTTCCAGCAATACAGCTGATAAAATAAATATAAATCTGTTGCAGGTGGCCAAAGTAATGAGAATCAGTTGAAGACAAAGAGAACAAGTAATGTTGCGCAAGGTGGGACTGCTTGTGAGATGCAACCAAAACCAAAGAGGCGGAAGAAAGGACAGGAAAACAACACCAAAGAAATAATAGGTAAAAACAGGGCAAGAAAAATATGTAACTAG
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| CDS seq | ATGACAGACCATGGAAACACATGTCTTTTTGGGTGTGCATTCCTAGGAGATGAGACAACTGAGACATTTAAGTGGGTTTTTGAGACATTCAGGACAGCTATGAGAGGCAAAGATCCTATTAGCATAATAACAGACCAAGACAGTGCAATGAGATCTGCAATAGGGCAAGTGTTCAAGAAAACCAAGCATAGGAACTGCCTATTTCATATCAAGAAAATTGCAGAGAGAGAACAGCTGCACAATGTGAAATACTTGCAATCAATTTGGGATACAAGACAAAGCTGCATCCCTGTCTATTGCAAGAATGACTTTTTCCCATTTATTCAAAGCACAACGCTAAGTGAAGGGACTAATGCAAGGTTTAAAAGAGGAGTTGGGCCAAGGCATAGTGTTACAAGCTTCCTAAAGGAATATGACAGAATAAATGACACTATATTTGATACACTGTATTGGAATGCCTATAACTCAAACACAAAACAACCCAAAAATCTATGGTCAGGATACTACATAGAAGAGCAAGCTTCGGAGATGTACAATTTAAGCATTTTCAAAAAGTTCCAGCTTGAATTAAAGAAATCAACAAGGCTTCAGTTCTCGAAGGATGGAATCCTTTGCTCCCATATCCTGAAAGTAATGTTGGACCTAAATGTTAGCAAAATTCCGAACAAATACATCATAGAAAGGTGGAGGAAGAAAGACAACAACATAACAGGTCTATTCAGAGGAGAATCAAGTAATGGACCTAATGCTATGCTAATGTACAACGTGCTCTCGCAAAAAATGTCAGAATTAGCATCAAAGGGTTGTAAGAGACCAGAGATATATAGTTACCTGGTTGGAGAAGTGGAGAAGTTGGATAGCATAGTGGACAGCATGATTCTAGAAGCCCATGGAAATCACACATGCCAGGTCCAAAGTAATGCAACAAACAACGCTGTTGTTGAGGGGCAACAACATGGGAATCTGAATGATGAAGAGGAAATTGAAGACCCAGAGCAAGCTAATACAAAAGGCAGGAAATCAATAAGGCAGAAAAGATTGGTGGAAAAGATTATGGATAAAGAATGCAAAAAATACAAAGGCAAGAGTGGCCAAAGTAATGAGAATCAGTTGAAGACAAAGAGAACAAGTAATGTTGCGCAAGGTGGGACTGCTTGTGAGATGCAACCAAAACCAAAGAGGCGGAAGAAAGGACAGGAAAACAACACCAAAGAAATAATAGGTAAAAACAGGGCAAGAAAAATATGTAACTAG
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| Protein seq | MTDHGNTCLFGCAFLGDETTETFKWVFETFRTAMRGKDPISIITDQDSAMRSAIGQVFKKTKHRNCLFHIKKIAEREQLHNVKYLQSIWDTRQSCIPVYCKNDFFPFIQSTTLSEGTNARFKRGVGPRHSVTSFLKEYDRINDTIFDTLYWNAYNSNTKQPKNLWSGYYIEEQASEMYNLSIFKKFQLELKKSTRLQFSKDGILCSHILKVMLDLNVSKIPNKYIIERWRKKDNNITGLFRGESSNGPNAMLMYNVLSQKMSELASKGCKRPEIYSYLVGEVEKLDSIVDSMILEAHGNHTCQVQSNATNNAVVEGQQHGNLNDEEEIEDPEQANTKGRKSIRQKRLVEKIMDKECKKYKGKSGQSNENQLKTKRTSNVAQGGTACEMQPKPKRRKKGQENNTKEIIGKNRARKICN |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g06820 | LOC_Os02g06820.1 | Chr02 | 3440051 | 3441653 | + | MSU_osa1r7 | ||
| CDS seq | ATGACAGACCATGGAAACACATGTCTTTTTGGGTGTGCATTCCTAGGAGATGAGACAACTGAGACATTTAAGTGGGTTTTTGAGACATTCAGGACAGCTATGAGAGGCAAAGATCCTATTAGCATAATAACAGACCAAGACAGTGCAATGAGATCTGCAATAGGGCAAGTGTTCAAGAAAACCAAGCATAGGAACTGCCTATTTCATATCAAGAAAATTGCAGAGAGAGAACAGCTGCACAATGTGAAATACTTGCAATCAATTTGGGATACAAGACAAAGCTGCATCCCTGTCTATTGCAAGAATGACTTTTTCCCATTTATTCAAAGCACAACGCTAAGTGAAGGGACTAATGCAAGGTTTAAAAGAGGAGTTGGGCCAAGGCATAGTGTTACAAGCTTCCTAAAGGAATATGACAGAATAAATGACACTATATTTGATACACTGTATTGGAATGCCTATAACTCAAACACAAAACAACCCAAAAATCTATGGTCAGGATACTACATAGAAGAGCAAGCTTCGGAGATGTACAATTTAAGCATTTTCAAAAAGTTCCAGCTTGAATTAAAGAAATCAACAAGGCTTCAGTTCTCGAAGGATGGAATCCTTTGCTCCCATATCCTGAAAGTAATGTTGGACCTAAATGTTAGCAAAATTCCGAACAAATACATCATAGAAAGGTGGAGGAAGAAAGACAACAACATAACAGGTCTATTCAGAGGAGAATCAAGTAATGGACCTAATGCTATGCTAATGTACAACGTGCTCTCGCAAAAAATGTCAGAATTAGCATCAAAGGGTTGTAAGAGACCAGAGATATATAGTTACCTGGTTGGAGAAGTGGAGAAGTTGGATAGCATAGTGGACAGCATGATTCTAGAAGCCCATGGAAATCACACATGCCAGGTCCAAAGTAATGCAACAAACAACGCTGTTGTTGAGGGGCAACAACATGGGAATCTGAATGATGAAGAGGAAATTGAAGACCCAGAGCAAGCTAATACAAAAGGCAGGAAATCAATAAGGCAGAAAAGATTGGTGGAAAAGATTATGGATAAAGAATGCAAAAAATACAAAGGCAAGAGTGGCCAAAGTAATGAGAATCAGTTGAAGACAAAGAGAACAAGTAATGTTGCGCAAGGTGGGACTGCTTGTGAGATGCAACCAAAACCAAAGAGGCGGAAGAAAGGACAGGAAAACAACACCAAAGAAATAATAGGTAAAAACAGGGCAAGAAAAATATGTAACTAG
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| Protein seq | MTDHGNTCLFGCAFLGDETTETFKWVFETFRTAMRGKDPISIITDQDSAMRSAIGQVFKKTKHRNCLFHIKKIAEREQLHNVKYLQSIWDTRQSCIPVYCKNDFFPFIQSTTLSEGTNARFKRGVGPRHSVTSFLKEYDRINDTIFDTLYWNAYNSNTKQPKNLWSGYYIEEQASEMYNLSIFKKFQLELKKSTRLQFSKDGILCSHILKVMLDLNVSKIPNKYIIERWRKKDNNITGLFRGESSNGPNAMLMYNVLSQKMSELASKGCKRPEIYSYLVGEVEKLDSIVDSMILEAHGNHTCQVQSNATNNAVVEGQQHGNLNDEEEIEDPEQANTKGRKSIRQKRLVEKIMDKECKKYKGKSGQSNENQLKTKRTSNVAQGGTACEMQPKPKRRKKGQENNTKEIIGKNRARKICN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.364322 | 0.105769 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0284500 | SBH | 1.183221 | 0.579924 | 2.876473 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0284500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004920 | RBH | 0.0 | 0.000000 | 2.468127 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012710 | SBH | 0.291923 | 1.039042 | 1.338261 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012550 | SBH | 0.529991 | 1.440129 | 5.804086 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012380 | SBH | 0.150447 | 0.071156 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0096600 | SBH | 1.875243 | 4.2945215 | 6.2171145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0009700 | SBH | 0 | 0 | 0.0113355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004920 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004880 | RBH | 0.0 | 0.0 | 0.000000 |
