Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g01730 | OGI:02001000 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:404245-406691 | ||||||||
| Gene Symbol | RLCK58, OsRLCK58 | ||||||||||
| DNA seq | TCATAGCATCCAAATGCACAAGCTGCACTCTTAATTTAGAAATCAATATTTACATTCCAGTATTTCATCACTCTAATCAATTGATTCCAGTTCTTTCCTAAGCAGTGTTCATCGTTTCCTACAATTAATTAATTACCTTGCCAATAATAAAACACACAGACACAAAAATAACTAAGTAAATCATCTACAAAATAAAAATAAACTGCAATCCGATATCCATCATGTGGAATCGGAGGCATCGTGCAGGTCGTGATGAGCAATGGAGATGGACGTCGCCGCCTTCTCCGCGATGGCCGCGCGCACCTGCGCCATCGTCGGCCGGAGGCCCGGCTGCGCCGCCAGGCACTCGACGGCGATCCTCGCCACGTCGCCGGCCTCCGCCGCGTCGTAGTCGTCGCCCAGCCGGCGGTCGGCGAGCCCGTCCACCCCCTCCGTCCTGACACGCGGCAGCAACCGCGCCGTGAGGTTGCCCCCGCCGGCGCCGCCATCCGGGCCGGGTATCCCGGCGGCCGGCGAGCCGGTGATGGCCTCGAGCAGAAGCACGCCGAAGCTGTAGACGTCGGACTTCTTGGAGACGATGCCGGTGCGGAGGAAGAAGGGGTCGACGTAGCCCGGCGAGCCGACGGCCGCCCTGGTGGGCGCGACGGCGGCGGAGAACCCCTCGCAGGCGGAGCCCAGGTCGCAGAGCCGCGCGCCCAGGCCACGGCCGTCGAGGAGCACGTTGGACGCCGACACGTCGCCGTGCACCACCGGAGGCGCGCCGTCGTGGAGGTGCTCGAGCGCGCCGGCCACGTCGTGGACGACGCGCATGCGGTGGCGCCATGGCAGAGGCGGCGATGCGCCGCCGTGGAGGCGGTCGGCGAGGGTGCCGCCGGAGAGGTACTCCAGGACCAGTGCACCTCCCTCCTCTGCACGCAGTAATAAAATTTCTTTTAATTAATTAATCTCTTTAATTAACAAAAAATCTCTCTCTTAGTAACAAACGTATAATATTATAAATCATTTTGACATACATATAATACCAAAATAGTTTTATTAAAATAAAATTAAATATATTTTGATAACAAGTTTGTTTTATGTTTTGTATATAAACTTAAATAAGTTTAACAAAGAAAAATCAAAATGATTTATAATATAAAACGGAGGGGTAGCAGGTTAATTAGATGAAGTATAAAATCATTTGCAATTTCTTTTTCTTTTTTGGGGGGATTTGCAATTTCATTCATCTGGGGATCAAAATTGAATTAGAATTAGGATTAAAATGATATATACGATCGAAAGCGATCGTGTTGAGTTAAGTTTTGGACGACGAAATGGGACGAAAATAACACAGGTCGTTACTCGTTAACGTACTAGACATAAATAGGCAACAGTGAAGTGACGTTTGTTCTTAATCGATCGGTAGGTAGGAGGTAATCTCCATTTCTTCTTCTTATTGTTTTCCCCCCGTACGACGTACGCATGCCATTCTCTACACATGTTTTATTCGGTCGATTTGAAATTTAATTTGTGAGGTGAAATGTAACATCATACTAGTAGTATTCATATTGAACTAACTTAATAACAAATCTTAAGAGGAGAAAGAAATTAAGCAAAGTAAATAAATAAGAAAGTGAAGAACATAGCAAGCAGCAAGCTGGAGTAGCTAGCATCAGAGTTGCATGCAGATGCAGTGTAAAGCAAGTGAAGAACAGAAAAAAGATGTTCCCTTTTAAGACTTTTAACCACACCGAGACGAGGTAACGTAAGCTTAGAGTCAAAGCTTCAATAATTTGTGCAAGGAAAAAAAACACACATAATTCAAGCAGTTGGAGTAGTAGGAGAGAGGAGAGTGACGTGTACCGTGGTCGTCGGAGTAGGCGAGGAGGGAGACGATGTGGGGGTGGCGGAGGCGGCGGAGCAGGTCGAGCTCCTGCCGGAACGCGCGCAGCCACCGCTCGCCGCCGCACCACCGGTGCACCTTCACCGCCACGGGCGGCGAGACGACGGCGACCCTGCAGCTGCTTGCCAGGTAGACCGTGCTGGAGCCACCTCGCCCCACCACCGCCGCCTCGTCGAAGCCGCCGGTGAGCGCCTCCACCTCCCGCCACGTCAGCTTCCAAGGCTCCCCCTCCTCCTTCGTCGACGGCACCAACTTCGCCGCCGGCCGCAACAACGGCAGCTCTTGCTGAGGAGGAGGAGAACACGGCGGCATCAGCTGTCGTGCTCCCGCCCCGCCTTCTGCGGCCTCGGCGTCGACGTCGGCGGCGGCGGCAGCACGGTGGCGGCGCCGGAGCCCGGAGAGGCAGTGACGGAGGAGGAGGAAGGTGATGGCGGCGGAGGAGAGGAGGAGGAGGCAGAAGAAGAGGACGGCGAGCGCCATGGCCACGTCCATGGCGCCGCGCTAAGCTTAGCTTCTTCAGTTTGGGAAAGAAATGCAAAGCAAAGCAAGAGCAGAGCAGAAAATG
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| CDS seq | ATGGACGTGGCCATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTCCTCCTCCTCCGTCACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCCGACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGTTCTCCTCCTCCTCAGCAAGAGCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGCGGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGCAGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGCGGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCACCCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCTCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCGACCTGGGCTCCGCCTGCGAGGGGTTCTCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGGCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCCATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCCGATTCCACATGA
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| Protein seq | MDVAMALAVLFFCLLLLSSAAITFLLLRHCLSGLRRRHRAAAAADVDAEAAEGGAGARQLMPPCSPPPQQELPLLRPAAKLVPSTKEEGEPWKLTWREVEALTGGFDEAAVVGRGGSSTVYLASSCRVAVVSPPVAVKVHRWCGGERWLRAFRQELDLLRRLRHPHIVSLLAYSDDHEEGGALVLEYLSGGTLADRLHGGASPPLPWRHRMRVVHDVAGALEHLHDGAPPVVHGDVSASNVLLDGRGLGARLCDLGSACEGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDGGAGGGNLTARLLPRVRTEGVDGLADRRLGDDYDAAEAGDVARIAVECLAAQPGLRPTMAQVRAAIAEKAATSISIAHHDLHDASDST |
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| Function | Salt tolerance receptor-like cytoplasmic kinase 1 [UniProtKB/Swiss-Prot:Q7XR88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g01730 | LOC_Os02g01730.1 | Chr02 | 404245 | 406691 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACGTGGCCATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTCCTCCTCCTCCGTCACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCCGACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGTTCTCCTCCTCCTCAGCAAGAGCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGCGGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGCAGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGCGGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCACCCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCTCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCGACCTGGGCTCCGCCTGCGAGGGGTTCTCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGGCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCCATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCCGATTCCACATGA
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| Protein seq | MDVAMALAVLFFCLLLLSSAAITFLLLRHCLSGLRRRHRAAAAADVDAEAAEGGAGARQLMPPCSPPPQQELPLLRPAAKLVPSTKEEGEPWKLTWREVEALTGGFDEAAVVGRGGSSTVYLASSCRVAVVSPPVAVKVHRWCGGERWLRAFRQELDLLRRLRHPHIVSLLAYSDDHEEGGALVLEYLSGGTLADRLHGGASPPLPWRHRMRVVHDVAGALEHLHDGAPPVVHGDVSASNVLLDGRGLGARLCDLGSACEGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDGGAGGGNLTARLLPRVRTEGVDGLADRRLGDDYDAAEAGDVARIAVECLAAQPGLRPTMAQVRAAIAEKAATSISIAHHDLHDASDST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.205751 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0106900 | RBH | 0.000000 | 0.255457 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02040 | RBH | 0.136618 | 0.435070 | 0.127105 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0106900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0000570 | RBH | 0.110192 | 1.629900 | 0.961316 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0000600 | RBH | 0.0 | 2.841682 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000580 | RBH | 0.000000 | 0.0 | 2.629400 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0000580 | RBH | 0.059422 | 0.170226 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0000570 | RBH | 1.264293 | 0.000000 | 0.910432 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0006100 | RBH | 5.3705885 | 4.5955525 | 1.847565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0000570 | RBH | 0.0 | 0.000000 | 0.081619 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0006400 | RBH | 4.794926 | 1.2770495 | 1.8544735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0000580 | RBH | 0.054336 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0000560 | RBH | 0.0 | 2.360311 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0000590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0000570 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0000570 | RBH | 0.078034 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G000580 | RBH | 0.0 | 0.0 | 0.954242 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0000570 | RBH | 0.000000 | 2.609249 | 1.299528 |
