Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g01360 | OGI:02000580 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:205424-207508 | ||||||||
| Gene Symbol | MADS60, OsMADS60, OsHLS1 | ||||||||||
| DNA seq | GAGAGAGAGAGAGAGAAGGAAAAAAAAAATCCCCAAATCGAATCGATCGGAATTTGCTTCTCCGTTGAGGCGAGGCGAGGGCGAAGGGGGAACGAAGTGGAAGGAGATTTGGATTGATTGGTTGGACGCCGGCGGCGCAGATCCCCAATTCGATCTCCTCCTCTTCGATCTTCATCCTACCCTGCCTGCCAGTGCCAGGTAATTCAATTCACCCTTCCGTCTTCCCCAATTCACCTCACCTGCTTCCATCTCCACCCCCAAATCACTTGATTACGGCTTAGGCTTCGGGAATTAATCACCCCCCGCTGCTAGTTACTTAGGGATCTGATGAATCTCATCTCCTACTCCCTCAACCTCAATGAATTGAATTCTTAGTTTGTTGTTGTTCCCTCCAATTGACTCATCTCTGTGCCTCTATTTCCCCGAATTCATTCTTCTCTGTGCCCGCCCGTCATCACCAATTCCGTTATTATTATTATACCTCTATTTCCTGATTTGCTTTAAATTATCACCACCTAGGAGCCAAGTCACCGCCGGGCTTGTTTACTTTCCATTGCAACAACGATAGTTTTACTTGTTACATGTCAACACAACAATAGGCTGTTCGCATAACCCTCATGTCTAGTATTTGCAAAATCATACGTACTTACCACCGCTTTGCATAACTCTGGAGTACTAGGGATATGATATCATGCGGTCTCTGTAAATTTTACTAAGCTGATTGATCTTTTTCTTTTAATTTCCTCCTGATGCAGTATAAGATTCTTATGAGCTGGTCGGCTGTGGTTTTCCCTCAATTCTGGTGCTACTAAGATGGGTCAGGAGCTCACCACAAACAAGCCTCTCACAACCCTCTTACCAACGGATGAAATAGCAACCGCCTACCATTTCTCCCTCCTCCTCTCACCTGTCGTCTCCTTTTGGGACTGCATCTTCCGCAAGATAAGATACTCATTCAGACCTGAGTGGGTGTAGCATCCTGCACTGCCTGTTTCTTTTTAGCGCTAGCCAGTGCTTTGCTTTCTGGCCTGGATCACTCCAAACAATGAACTTTGAAGCTTTTGCTTTCCCGTAATTACAATTACAGTCACTAGTGGAGTTTAGCTGAAAATAGTACATAGTTGTCATGGAAAAGGCCGCGGCCAATCAGGCGGGCAAAGTCTTGAAGAAAGGTAAGAAGAAACAAGCCAAGGATGAATTAGATCGCCAGAAGCAGGCTGAGAAGAAGAGACGGCGGCTGGAGAAAGCGCTTGCAAACTCCGCTGCCATTATATCTGAGCTGGAAAAGAAGAAGCAGAAGAAGAGGGAAGAACAGCAAAGGCTGGATGAGGAAGGTGCTGCGATAGCTGAAGCAGTTGCTCTTCATGTCCTCATTGGTGAGGACTCCGATGAACCCTGCCATTTGATGCTAAACAAGCACAGAAGATGCAACCATTGGGATCACTCAGCTGGTTTTGATTTCGCCGTGGATGCACAAGGCGCTGATATTTATCCTCCTGATGGACTGATACAGTGCGCTGATCATGTTTATGCTCCCAAAGGGAGGTGTATTGATTGGGGGATTGGCCAGCCATTGCCATCTTGGGGAGAGGTGAAGGACTTGCAGTTGCAGGCACCGTGCTACCAAGGAATGTTCCACCAGTCAGTTGCATGCCCAGGTTTCATAGCAGCTCAAGCGGTCTCCTCCTTGCAAATCGGAGGAGATTCGTCAGATATTACCTCTCCAAGCCAAGGAGCGACTGTCGTTAATAGGATGCTTGGTGCCACCAACAGGCTCAACCTTTACAGAGAGATATAAAAACATACACTTCACGATATTATTATTGTATATAGTCATCAAACTTGTGTTGACTACTTTGCCTGCAGTATATCTCATAACCAAAGAAGAATTGGATAGAACACCTTGTTTACTGTTTCTGTGAGTCTAAAAGGATATCTTATATCAGTCAAATTGGTATTGTAATGAACATATTGTTTTGATTCCCTGTTGATTTTCTTGGAATGTATCCTGTGTCGACTTGATGTTCTGTACAGTGCTCTTGTGCTTTCTTTTACAACTATTACTATATCTAACTTGAGATGTCA
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| CDS seq | ATGGAAAAGGCCGCGGCCAATCAGGCGGGCAAAGTCTTGAAGAAAGGTAAGAAGAAACAAGCCAAGGATGAATTAGATCGCCAGAAGCAGGCTGAGAAGAAGAGACGGCGGCTGGAGAAAGCGCTTGCAAACTCCGCTGCCATTATATCTGAGCTGGAAAAGAAGAAGCAGAAGAAGAGGGAAGAACAGCAAAGGCTGGATGAGGAAGGTGCTGCGATAGCTGAAGCAGTTGCTCTTCATGTCCTCATTGGTGAGGACTCCGATGAACCCTGCCATTTGATGCTAAACAAGCACAGAAGATGCAACCATTGGGATCACTCAGCTGGTTTTGATTTCGCCGTGGATGCACAAGGCGCTGATATTTATCCTCCTGATGGACTGATACAGTGCGCTGATCATGTTTATGCTCCCAAAGGGAGGTGTATTGATTGGGGGATTGGCCAGCCATTGCCATCTTGGGGAGAGGTGAAGGACTTGCAGTTGCAGGCACCGTGCTACCAAGGAATGTTCCACCAGTCAGTTGCATGCCCAGGTTTCATAGCAGCTCAAGCGGTCTCCTCCTTGCAAATCGGAGGAGATTCGTCAGATATTACCTCTCCAAGCCAAGGAGCGACTGTCGTTAATAGGATGCTTGGTGCCACCAACAGGCTCAACCTTTACAGAGAGATATAA
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| Protein seq | MEKAAANQAGKVLKKGKKKQAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKKREEQQRLDEEGAAIAEAVALHVLIGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGADIYPPDGLIQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFIAAQAVSSLQIGGDSSDITSPSQGATVVNRMLGATNRLNLYREI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g01360 | LOC_Os02g01360.1 | Chr02 | 205424 | 207508 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAAAAGGCCGCGGCCAATCAGGCGGGCAAAGTCTTGAAGAAAGGTAAGAAGAAACAAGCCAAGGATGAATTAGATCGCCAGAAGCAGGCTGAGAAGAAGAGACGGCGGCTGGAGAAAGCGCTTGCAAACTCCGCTGCCATTATATCTGAGCTGGAAAAGAAGAAGCAGAAGAAGAGGGAAGAACAGCAAAGGCTGGATGAGGAAGGTGCTGCGATAGCTGAAGCAGTTGCTCTTCATGTCCTCATTGGTGAGGACTCCGATGAACCCTGCCATTTGATGCTAAACAAGCACAGAAGATGCAACCATTGGGATCACTCAGCTGGTTTTGATTTCGCCGTGGATGCACAAGGCGCTGATATTTATCCTCCTGATGGACTGATACAGTGCGCTGATCATGTTTATGCTCCCAAAGGGAGGTGTATTGATTGGGGGATTGGCCAGCCATTGCCATCTTGGGGAGAGGTGAAGGACTTGCAGTTGCAGGCACCGTGCTACCAAGGAATGTTCCACCAGTCAGTTGCATGCCCAGGTTTCATAGCAGCTCAAGCGGTCTCCTCCTTGCAAATCGGAGGAGATTCGTCAGATATTACCTCTCCAAGCCAAGGAGCGACTGTCGTTAATAGGATGCTTGGTGCCACCAACAGGCTCAACCTTTACAGAGAGATATAA
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| Protein seq | MEKAAANQAGKVLKKGKKKQAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKKREEQQRLDEEGAAIAEAVALHVLIGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGADIYPPDGLIQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFIAAQAVSSLQIGGDSSDITSPSQGATVVNRMLGATNRLNLYREI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.483038 | 1.506388 | 1.923344 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0104200 | RBH | 3.923061 | 2.382350 | 7.977793 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g01365 | RBH | 0.493327 | 0.443137 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0104200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0000370 | RBH | 1.176720 | 39.017246 | 5.269027 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0000400 | RBH | 0.980628 | 7.674123 | 2.789175 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000370 | RBH | 3.839468 | 36.204044 | 19.930433 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0000370 | RBH | 0.352570 | 0.517620 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0000370 | RBH | 13.960012 | 35.861557 | 18.669487 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0003500 | RBH | 5.448764 | 8.032712 | 4.7731035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0000370 | RBH | 0.597506 | 1.727457 | 2.260777 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0003900 | SBH | 29.826758 | 82.788368 | 23.182024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0000370 | RBH | 1.041391 | 0.541518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0000350 | RBH | 2.692673 | 18.134102 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0000360 | RBH | 9.130742 | 30.920429 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0000360 | RBH | 2.090799 | 2.411609 | 2.024312 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0000370 | RBH | 1.557254 | 15.675582 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G000340 | RBH | 2.010859 | 2.563663 | 5.487081 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0000370 | RBH | 7.490526 | 45.820309 | 15.958769 |
