Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g74130 | OGI:01125880 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:42937166-42940151 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATAACAGGCCAGCCGTGCAGGCGGTGACACCAGTCAGCGGCGGATGCGGCGGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAGCACCAGTCGGCGGCGGTCGAGGCGTCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAACCGTGCAGGCGGAAACACCAGTCGGCAGCGGCGAAGGCAAGCCGGTCGGTAAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCAGCGGCGAAGGCAAGCCGGTCGGTAAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGGCGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCAAGCCGGTCAGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCAGCGGCGAAGGCAAGCCGGTCGGTAAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGTCAAGGCGAGCCGGTGGTGATGTTCTGACTGATCCATTCCTGGAGCGTAAGAGATAAGCTTAAAGCCATGAATCCCTTTTATGCATATCTGGATCTGGATCCTGCAGAACAAACATATAGGATGAGTAGTATCTGATATAAATATAATACTCGAGAAAAAATCAAGTATTTTAAAATATTTATAAATATGTATTTCTCCTCTTGTCAATTTTGATTTCCCCGAGCAGATGACTCTGTACGTTTAAACACTCTGTCCGACTAGTCATAGCCCCCAAGCATCGGGAGTCGACCTAGGCATTTCCCAAACATGCATATGAGTGACATGAGTTCGTCATTAATGGAACAAAGTTTCACGGATCGGAGTTTACTACTCGGGTACTTTTAATTATTAAGAGCAGAAAATAAATTATCTTATCTCTATGCTTTTGATTTATTCCGAATAATACTTAGCACCTTGCGTTACTCGGTCCATCCAACGAGCCCCCGGGTGCTAGGAATCGGCCCAAAGGCAACCATCCATTGACAAACCAAACGGAAAGCATAGGAAGATAGAACTCCATAACTCGATAGGTACTTTTGTACTCAGATTATGTCGCAAGCAATCAAGATAAATATTATGGAAAATATGATATAACATCTGTAGCCCCCGACTCACTGCTCAATGGAAGACCAATTGGTGTAGTGAGGCAGAGGAAAAGGAAAAATATCATATAAAGAATAAAATAAATGATGACTTAGCTTTGTCGTATTCCCTCGGTGACAGCAGAAGTAGCCGATGTGGGAATGAAGCAGTCCATCAATGGTGACAAAAACACCAGTCGGCGCCAGTGGAACCAAGCCAGTGGTGTAGATGGTGAAGCCCATTAACAACGGCGGAGTCCGCCAACCGTATAGGCAAAAACACCAGTCAGTGGCGGCAGAGGCAGGCCAACGGTGAAGTCGTAGACGCCCAACAGCAGCGGCATAATAGGCTAGCCGTGTAGGCAGAAACACCAGTCGGCGGCGGCGAAGGCCAGTCGGTCGGCGAAGACGTGGACGCCCATGAACGGTGGTGTGACCAACCAACCGTATAGGCGAGGACACCAGTCGGCGGCGACGGAGGCAGGCCGGCGGTGAAGTCGTAGACGTCCAACAGCGGCGGCATAATAGGCCAGCCGTGTAGGCGGAAACACCAGTCGGCGGCGGCAGAGGCAGGCCAACGGTGAAGTCGTAGACGCCCAACAGCAGCGGCATAATAGGCTAGCCGTGTAGGCAGAAACACCAGTCGGCGGCGGCGAAGGCCAGCCGGTCGGCGAAGACGTGGACGCCCATGAACGGTGGTGTGACCAACCAACCGTATAGGCGAGGACACCAGTCGGCGGCGACGGAGGCAGGCCGGCGGTGAAGTCGTAGACGTCCAACAGCGGCGGCATAATAGGCCAGCCGTGTAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCCAGCCGGTCGGCGAAGACGTGGACGCCCATGAACGGTGGTGTGACCAACCAACCGTATAGGCGAGGACACCAGTCGGCGGCGACGGAGGCAGGCCGGCGGTGAAGTCGTAGACGCCCAACAGCGGCGGCATAATAGGCCAGCCGTGTAGGCGGAGGCACCACTCGGCGGCAACGGAGGCAAGCCGGCGGTGAAGTCGTAGACGCCCAACAGCGGCGGCATAATAGGCCAGCCGTGTAGGCGGAGGCACCACTCGGCGGCGACGGAGGCAAGCCGGCGGTGAAGTCGTAGACGCCCAACAGCGGCGGCATAATAGGCCAGCCGTGTAGGCGGAGGCACCAATCGGCGGCGACGGAGGTAGGCCGGCGGTGAAGTCGTAGATGCCCAATAGCGGCGGCATAATAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCCAGCCGGTCGGTGAAGACGTGGACGCCCATGAACGGTGGTGTGACCAACCAACCGCAT
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| CDS seq | ATGCGGTTGGTTGGTCACACCACCGTTCATGGGCGTCCACGTCTTCACCGACCGGCTGGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTATTATGCCGCCGCTATTGGGCATCTACGACTTCACCGCCGGCCTACCTCCGTCGCCGCCGATTGGTGCCTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGGCGTCTACGACTTCACCGCCGGCTTGCCTCCGTCGCCGCCGAGTGGTGCCTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGGCGTCTACGACTTCACCGCCGGCTTGCCTCCGTTGCCGCCGAGTGGTGCCTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGGCGTCTACGACTTCACCGCCGGCCTGCCTCCGTCGCCGCCGACTGGTGTCCTCGCCTATACGGTTGGTTGGTCACACCACCGTTCATGGGCGTCCACGTCTTCGCCGACCGGCTGGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGACGTCTACGACTTCACCGCCGGCCTGCCTCCGTCGCCGCCGACTGGTGTCCTCGCCTATACGGTTGGTTGGTCACACCACCGTTCATGGGCGTCCACGTCTTCGCCGACCGGCTGGCCTTCGCCGCCGCCGACTGGTGTTTCTGCCTACACGGCTAGCCTATTATGCCGCTGCTGTTGGGCGTCTACGACTTCACCGTTGGCCTGCCTCTGCCGCCGCCGACTGGTGTTTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGACGTCTACGACTTCACCGCCGGCCTGCCTCCGTCGCCGCCGACTGGTGTCCTCGCCTATACGGTTGGTTGGTCACACCACCGTTCATGGGCGTCCACGTCTTCGCCGACCGACTGGCCTTCGCCGCCGCCGACTGGATCCAGATCCAGATATGCATAAAAGGGATTCATGGCTTTAAGCTTATCTCTTACGCTCCAGGAATGGATCAGTCAGAACATCACCACCGGCTCGCCTTGACCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTTACCGACCGGCTTGCCTTCGCCGCTGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACTGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGCCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTTACCGACCGGCTTGCCTTCGCCGCTGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTTACCGACCGGCTTGCCTTCGCCGCTGCCGACTGGTGTTTCCGCCTGCACGGTTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGACGCCTCGACCGCCGCCGACTGGTGCTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCCGCCGCATCCGCCGCTGACTGGTGTCACCGCCTGCACGGCTGGCCTGTTATAA
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| Protein seq | MRLVGHTTVHGRPRLHRPAGLRRRRLVFPPARLAYYAAAIGHLRLHRRPTSVAADWCLRLHGWPIMPPLLGVYDFTAGLPPSPPSGASAYTAGLLCRRCWASTTSPPACLRCRRVVPPPTRLAYYAAAVGRLRLHRRPASVAADWCPRLYGWLVTPPFMGVHVFADRLAFAAADWCFRLHGWPIMPPLLDVYDFTAGLPPSPPTGVLAYTVGWSHHRSWASTSSPTGWPSPPPTGVSAYTASLLCRCCWASTTSPLACLCRRRLVFPPTRLAYYAAAVGRLRLHRRPASVAADWCPRLYGWLVTPPFMGVHVFADRLAFAAADWIQIQICIKGIHGFKLISYAPGMDQSEHHHRLALTAADWCFRLHGWPLCRRCWASTSSPTGLPSPPPTGVSACTAGLYAAVVGRLRLYRPACLRRCRLVFPPARLAFMPPLLGVYVFTDRLAFAAADWCFRLHGWPLCRRCWAPTSSPTGLPSPPPTGVSACTAGLYAAVVGRLRLYRPACLRRCRLVFPPARLAFMPPLLGVYVFTDRLAFAAADWCFRLHGWPLCRRCWASTSSPTGLPSPPPTGVSACTAGLYAAVVGRLRLHRPACLRRRRLVFPPARLAFMPPLLGVYVFTDRLAFAAADWCFRLHGWPLCRRCWASTSSPTGRLDRRRLVLPPARLAFMPPLLGVYVFTDRPPHPPLTGVTACTAGLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g74130 | LOC_Os01g74130.1 | Chr01 | 42937166 | 42940151 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGGTTGGTTGGTCACACCACCGTTCATGGGCGTCCACGTCTTCACCGACCGGCTGGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTATTATGCCGCCGCTATTGGGCATCTACGACTTCACCGCCGGCCTACCTCCGTCGCCGCCGATTGGTGCCTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGGCGTCTACGACTTCACCGCCGGCTTGCCTCCGTCGCCGCCGAGTGGTGCCTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGGCGTCTACGACTTCACCGCCGGCTTGCCTCCGTTGCCGCCGAGTGGTGCCTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGGCGTCTACGACTTCACCGCCGGCCTGCCTCCGTCGCCGCCGACTGGTGTCCTCGCCTATACGGTTGGTTGGTCACACCACCGTTCATGGGCGTCCACGTCTTCGCCGACCGGCTGGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGACGTCTACGACTTCACCGCCGGCCTGCCTCCGTCGCCGCCGACTGGTGTCCTCGCCTATACGGTTGGTTGGTCACACCACCGTTCATGGGCGTCCACGTCTTCGCCGACCGGCTGGCCTTCGCCGCCGCCGACTGGTGTTTCTGCCTACACGGCTAGCCTATTATGCCGCTGCTGTTGGGCGTCTACGACTTCACCGTTGGCCTGCCTCTGCCGCCGCCGACTGGTGTTTCCGCCTACACGGCTGGCCTATTATGCCGCCGCTGTTGGACGTCTACGACTTCACCGCCGGCCTGCCTCCGTCGCCGCCGACTGGTGTCCTCGCCTATACGGTTGGTTGGTCACACCACCGTTCATGGGCGTCCACGTCTTCGCCGACCGACTGGCCTTCGCCGCCGCCGACTGGATCCAGATCCAGATATGCATAAAAGGGATTCATGGCTTTAAGCTTATCTCTTACGCTCCAGGAATGGATCAGTCAGAACATCACCACCGGCTCGCCTTGACCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTTACCGACCGGCTTGCCTTCGCCGCTGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACTGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGCCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTTACCGACCGGCTTGCCTTCGCCGCTGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTTACCGACCGGCTTGCCTTCGCCGCTGCCGACTGGTGTTTCCGCCTGCACGGTTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGACGCCTCGACCGCCGCCGACTGGTGCTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCCGCCGCATCCGCCGCTGACTGGTGTCACCGCCTGCACGGCTGGCCTGTTATAA
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| Protein seq | MRLVGHTTVHGRPRLHRPAGLRRRRLVFPPARLAYYAAAIGHLRLHRRPTSVAADWCLRLHGWPIMPPLLGVYDFTAGLPPSPPSGASAYTAGLLCRRCWASTTSPPACLRCRRVVPPPTRLAYYAAAVGRLRLHRRPASVAADWCPRLYGWLVTPPFMGVHVFADRLAFAAADWCFRLHGWPIMPPLLDVYDFTAGLPPSPPTGVLAYTVGWSHHRSWASTSSPTGWPSPPPTGVSAYTASLLCRCCWASTTSPLACLCRRRLVFPPTRLAYYAAAVGRLRLHRRPASVAADWCPRLYGWLVTPPFMGVHVFADRLAFAAADWIQIQICIKGIHGFKLISYAPGMDQSEHHHRLALTAADWCFRLHGWPLCRRCWASTSSPTGLPSPPPTGVSACTAGLYAAVVGRLRLYRPACLRRCRLVFPPARLAFMPPLLGVYVFTDRLAFAAADWCFRLHGWPLCRRCWAPTSSPTGLPSPPPTGVSACTAGLYAAVVGRLRLYRPACLRRCRLVFPPARLAFMPPLLGVYVFTDRLAFAAADWCFRLHGWPLCRRCWASTSSPTGLPSPPPTGVSACTAGLYAAVVGRLRLHRPACLRRRRLVFPPARLAFMPPLLGVYVFTDRLAFAAADWCFRLHGWPLCRRCWASTSSPTGRLDRRRLVLPPARLAFMPPLLGVYVFTDRPPHPPLTGVTACTAGLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0265800 | SBH | 0.100539 | 0.068813 | 0.164000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g06150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0265800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0655400 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0367100 | RBH | 0.0030525 | 0.009363 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003171 | SBH | 0.799205 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
