Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g73170 | OGI:01124610 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:42429502-42432618 | ||||||||
| Gene Symbol | prx20 | ||||||||||
| DNA seq | ACAAGCCACCTCGATCGATCTCCATTGAAATCAAGGCACCTTAATAATTTCTAGTACCATATTAAGCTAAGAACAGTAGTGTACATGGCTTCTCGTAGAAGTGCAGCAGCTAGTCCGGCCATGGCAGCAGCAGCTGCGGTAGTAGCTGTATCTGTATACTTGCTGGTGTGCAGTGCTCCGGCGGCGGCGACGGCGGCGGCGGTGGCGAAGAAGCCGTCGTACCCGCCGGTGGCGAAGGGGCTATCGTTCGACCACTACAAGAAGAGTTGCCCGCAGGCGGAGGCCATCGTGTTCAGCTTCCTGCGCGACGCCATCGGCAAGGACGTCGGCCTCGCCGCGGCGCTGATCCGGCTCCACTTCCACGACTGCTTCGTCCAGGGCTGCGACGCCTCCATCCTCCTCACCAAGACGCCCGGCGGGCCCGACGGCGAGCAGCAGGCGATACCCAACGAGTCGCTGCGGCCGGCGGCGTTCAAGGCCGTCAACGACATCCGCGCCCTGCTCGACAGGGCGTGCGGCCGCGTCGTCTCCTGCTCCGACATCGTCACCCTCGCCGCCCGCGATTCCGTCAAACTGGTAACTAACTAAGTTAATTGATTAATTAATATTTTTTTCACTTACTTACTGCCACTGGAAAAGTTTTTCATGGAAGAGGAGATGGATTAAACACTACTGCTATCTAAAAAGTGGAGTTCATGAATAGAGGATAGGAAAATTAACTTAAGTAATGTGGGTTAGGATTCAAAATTTCCGAATGAAATTTTGGTCATATTAGACCATCCGATACCATACTATTTTAGCTAAATTTTTAATTTTTAATTTTTTTCATGAATTTTGGTAATATTTATTTAAATTTGAATAACATATTTTTAAAATTTCAAAAAATTTGAACCGAAATTTCGAAAATATCATCATATCGGCACCCGATACAGATACCGGAAACAAAAAGTCTGAACCCTGATGTGGGCACTGGCGCACTGCACGATGCTGCCGATGCACGAACTGTGTTTCATCCATCCATGATCCATGCATCTTGTTTCTCCAATTTTCTAGTATATCTCGATCTGGCAGCGGACAAGAGACTTTCGTTGTCCGGTCCTAAATTAATCAACAGAAATGACCAAAGAACATCTTACAATATAATGATCATCCCTTTAAAATTCTCTTAATTAATTAAATACCCAACAATTAATTATGCACGCATCGAAAAACAAAGGGAAAAGAATCTACGCAGAGTTCTGCATGTTAGAAAAGACAATTCCCTTTAAGCTAGCCTTCTTTAGAGTGAAAGATATTTGGAGATCAATTTGCACGTAAATTAATCTAATTAATTAAGCCATGTAACTGAGTAACAATTCCCTTGAAGAGCCATAGGAAACTATAACGCGGGATAATTGGACTGTCACGATCAGTACTTCTGTAGAATTTATTGGCTTGCGAGAAATGGCACAAGAAGAACAAGATAGAGATGAAGGAAACAGGAAATTGTGTTGCTGTCTCAACCACGTGTGGAATCACTGTATCATGCCCAATGGCCAAAATTATCAGAACATCGACATCTTAAATAATTAGGACGACTAATACGTGTAACAGATATTAATAAGACCATTTGCTGACTAGGAGTGTACCATCGATGTTCATTAACTAATTAATTATTTATTAATCAATTAGTCATTACATATCATTTACTTGCTCTGTTCACGAATATAAACATTTTTAAGGAGTCAAAGCATGGATTAAGATTTAGATGAAATTGTTTTGATGACTAGAAATTTTACTAATAATGTTAAAAATACGTTTTCTAAAAAAAATAATGAGATTAAAGATATGATATGGTCCCCATATCTTTGGACTTTGAGTATGTATTAGACTGTTATTAGCGTGGTGTTGTGTATGTTTGGTTTGTGCATGGTTACGGATGTGCCCGTGTAAATCAATAAATCTTAAAGGAGTAGTTGGACTGGAAAAGTGGTACGGAGTATTACATAAATGTTTGTTCTGGACAAATTTAATTAAACGTTAGAAATGTTTACGTCTGTGCAAAGATAAATATTAATCAGTGAATGTTAGAACATACTCCCTCCGTTTCATAATGTAAGTCATTCTTTGATGCCCAATTCTTTGATGTAACCCCTACTCTATCAATATACAAGCAAAGCTTTTACCCTCTTTTCAAGAAAAATAAATATAAAAACCAAAATGTTGAACATTGCAATTGGGTGCAGGCCGGTGGGCCGTCGTACAAGGTGCCGCTCGGCCGCCGTGACGGCCTCACATCGGCGACGCCGTCACAGGTGCTGGGCGCGCTCCCGCCGCCGACCTCCCACGTCCCCGAGCTCATCGCCGCGCTGGCCAAGCTCAACCTCGACGCCGCCGACCTCATCGCGCTCTCCGGCGCCCACACCGTCGGCATCGCCCACTGCACCTCCTTCACCGGGCGGCTGTACCCGAAGCAGGACGGCACCATGGACAAGTGGTTCGCCGGCCAGCTCAAGCTGACGTGCCCGAAGAACGACACGGCCAACACCACCGTCAACGACATCCGGACGCCCAACGCCTTCGACAACAAGTACTACGTCGACCTGCAAAACCGCCAGGGCCTCTTCACCTCCGACCAGGACCTCTTCGTCAACGCCACCACCAGGCCGCTCGTCGCCGAGTTCGCCGTCGACCAGTCGGCGTTCTTCCACCAGTTCGTCTTCTCCGTCGTCAAGATGGGCCAGATCCAGGTGCTCACCGGCTCGCAGGGACAGATCCGGGCAAACTGCTCCGTCCGCAACCCCGGCGCCGCCTCCGCCGACGAGGAGCTCCCGTGGTCCGCCGCCGTGGAGACCGTCGTCGAGGCGGCCGAGAGCATCGTGCTCTAGACACACAATTGTGCGCGCCATGGACGCGTACGTCAGTACGTGTACCGTACGTTGAATGTGGAAAGAGACGACGACGACTGTGGATATATGTTGGTTACTGCCATGTCGAATAAATGCATGACGTCATGACAACCTCCTTTATGATCAATATATATGGATGTGGATTTTCATCTTGCAGGAAACATCTTTTATTGTTTGTATGTTATCTAAATAGTTATTAAAAATTTAAAAAATTATATATAATAACATA
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| CDS seq | ATGGCTTCTCGTAGAAGTGCAGCAGCTAGTCCGGCCATGGCAGCAGCAGCTGCGGTAGTAGCTGTATCTGTATACTTGCTGGTGTGCAGTGCTCCGGCGGCGGCGACGGCGGCGGCGGTGGCGAAGAAGCCGTCGTACCCGCCGGTGGCGAAGGGGCTATCGTTCGACCACTACAAGAAGAGTTGCCCGCAGGCGGAGGCCATCGTGTTCAGCTTCCTGCGCGACGCCATCGGCAAGGACGTCGGCCTCGCCGCGGCGCTGATCCGGCTCCACTTCCACGACTGCTTCGTCCAGGGCTGCGACGCCTCCATCCTCCTCACCAAGACGCCCGGCGGGCCCGACGGCGAGCAGCAGGCGATACCCAACGAGTCGCTGCGGCCGGCGGCGTTCAAGGCCGTCAACGACATCCGCGCCCTGCTCGACAGGGCGTGCGGCCGCGTCGTCTCCTGCTCCGACATCGTCACCCTCGCCGCCCGCGATTCCGTCAAACTGGCCGGTGGGCCGTCGTACAAGGTGCCGCTCGGCCGCCGTGACGGCCTCACATCGGCGACGCCGTCACAGGTGCTGGGCGCGCTCCCGCCGCCGACCTCCCACGTCCCCGAGCTCATCGCCGCGCTGGCCAAGCTCAACCTCGACGCCGCCGACCTCATCGCGCTCTCCGGCGCCCACACCGTCGGCATCGCCCACTGCACCTCCTTCACCGGGCGGCTGTACCCGAAGCAGGACGGCACCATGGACAAGTGGTTCGCCGGCCAGCTCAAGCTGACGTGCCCGAAGAACGACACGGCCAACACCACCGTCAACGACATCCGGACGCCCAACGCCTTCGACAACAAGTACTACGTCGACCTGCAAAACCGCCAGGGCCTCTTCACCTCCGACCAGGACCTCTTCGTCAACGCCACCACCAGGCCGCTCGTCGCCGAGTTCGCCGTCGACCAGTCGGCGTTCTTCCACCAGTTCGTCTTCTCCGTCGTCAAGATGGGCCAGATCCAGGTGCTCACCGGCTCGCAGGGACAGATCCGGGCAAACTGCTCCGTCCGCAACCCCGGCGCCGCCTCCGCCGACGAGGAGCTCCCGTGGTCCGCCGCCGTGGAGACCGTCGTCGAGGCGGCCGAGAGCATCGTGCTCTAG
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| Protein seq | MASRRSAAASPAMAAAAAVVAVSVYLLVCSAPAAATAAAVAKKPSYPPVAKGLSFDHYKKSCPQAEAIVFSFLRDAIGKDVGLAAALIRLHFHDCFVQGCDASILLTKTPGGPDGEQQAIPNESLRPAAFKAVNDIRALLDRACGRVVSCSDIVTLAARDSVKLAGGPSYKVPLGRRDGLTSATPSQVLGALPPPTSHVPELIAALAKLNLDAADLIALSGAHTVGIAHCTSFTGRLYPKQDGTMDKWFAGQLKLTCPKNDTANTTVNDIRTPNAFDNKYYVDLQNRQGLFTSDQDLFVNATTRPLVAEFAVDQSAFFHQFVFSVVKMGQIQVLTGSQGQIRANCSVRNPGAASADEELPWSAAVETVVEAAESIVL |
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| Function | Cationic peroxidase SPC4 [UniProtKB/Swiss-Prot:P84516] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g73170 | LOC_Os01g73170.1 | Chr01 | 42429502 | 42432618 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTTCTCGTAGAAGTGCAGCAGCTAGTCCGGCCATGGCAGCAGCAGCTGCGGTAGTAGCTGTATCTGTATACTTGCTGGTGTGCAGTGCTCCGGCGGCGGCGACGGCGGCGGCGGTGGCGAAGAAGCCGTCGTACCCGCCGGTGGCGAAGGGGCTATCGTTCGACCACTACAAGAAGAGTTGCCCGCAGGCGGAGGCCATCGTGTTCAGCTTCCTGCGCGACGCCATCGGCAAGGACGTCGGCCTCGCCGCGGCGCTGATCCGGCTCCACTTCCACGACTGCTTCGTCCAGGGCTGCGACGCCTCCATCCTCCTCACCAAGACGCCCGGCGGGCCCGACGGCGAGCAGCAGGCGATACCCAACGAGTCGCTGCGGCCGGCGGCGTTCAAGGCCGTCAACGACATCCGCGCCCTGCTCGACAGGGCGTGCGGCCGCGTCGTCTCCTGCTCCGACATCGTCACCCTCGCCGCCCGCGATTCCGTCAAACTGGCCGGTGGGCCGTCGTACAAGGTGCCGCTCGGCCGCCGTGACGGCCTCACATCGGCGACGCCGTCACAGGTGCTGGGCGCGCTCCCGCCGCCGACCTCCCACGTCCCCGAGCTCATCGCCGCGCTGGCCAAGCTCAACCTCGACGCCGCCGACCTCATCGCGCTCTCCGGCGCCCACACCGTCGGCATCGCCCACTGCACCTCCTTCACCGGGCGGCTGTACCCGAAGCAGGACGGCACCATGGACAAGTGGTTCGCCGGCCAGCTCAAGCTGACGTGCCCGAAGAACGACACGGCCAACACCACCGTCAACGACATCCGGACGCCCAACGCCTTCGACAACAAGTACTACGTCGACCTGCAAAACCGCCAGGGCCTCTTCACCTCCGACCAGGACCTCTTCGTCAACGCCACCACCAGGCCGCTCGTCGCCGAGTTCGCCGTCGACCAGTCGGCGTTCTTCCACCAGTTCGTCTTCTCCGTCGTCAAGATGGGCCAGATCCAGGTGCTCACCGGCTCGCAGGGACAGATCCGGGCAAACTGCTCCGTCCGCAACCCCGGCGCCGCCTCCGCCGACGAGGAGCTCCCGTGGTCCGCCGCCGTGGAGACCGTCGTCGAGGCGGCCGAGAGCATCGTGCTCTAG
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| Protein seq | MASRRSAAASPAMAAAAAVVAVSVYLLVCSAPAAATAAAVAKKPSYPPVAKGLSFDHYKKSCPQAEAIVFSFLRDAIGKDVGLAAALIRLHFHDCFVQGCDASILLTKTPGGPDGEQQAIPNESLRPAAFKAVNDIRALLDRACGRVVSCSDIVTLAARDSVKLAGGPSYKVPLGRRDGLTSATPSQVLGALPPPTSHVPELIAALAKLNLDAADLIALSGAHTVGIAHCTSFTGRLYPKQDGTMDKWFAGQLKLTCPKNDTANTTVNDIRTPNAFDNKYYVDLQNRQGLFTSDQDLFVNATTRPLVAEFAVDQSAFFHQFVFSVVKMGQIQVLTGSQGQIRANCSVRNPGAASADEELPWSAAVETVVEAAESIVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.561063 | 1.344267 | 0.575155 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0962700 | RBH | 3.963992 | 2.100241 | 2.347865 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0962700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047940 | RBH | 1.168258 | 177.305801 | 5.683673 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047430 | RBH | 0.0 | 9.303167 | 3.123554 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047930 | RBH | 4.272111 | 51.793446 | 6.908676 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047340 | RBH | 0.238842 | 2.188922 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046940 | RBH | 6.914035 | 1.419405 | 15.293225 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0697600 | RBH | 8.5837925 | 0.5036825 | 19.397581 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046400 | RBH | 0.390010 | 4.553105 | 0.802642 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0697300 | RBH | 9.9178385 | 1.413552 | 5.77113 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046990 | SBH | 0.099767 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046840 | RBH | 0.618584 | 20.528595 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047150 | RBH | 0.0 | 11.210967 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047130 | RBH | 1.055751 | 2.092101 | 1.493966 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046890 | RBH | 0.473245 | 30.831770 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047190 | RBH | 1.157340 | 13.372015 | 2.390921 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046950 | RBH | 2.411438 | 8.158442 | 2.702874 |
