Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g71100 | OGI:01121180 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:41149955-41154678 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGCTTCAAATTAAACATGTTGCATAATGACCAGGGCAATGACTGTAGCTTAGAACAACTTGTGAGGTTCAAAGACTGGAGCTCAGAGAGATCACCAAAGCATTCAGGGAGTTGTATCAGCCCATGGCAGTCTGAAAGATTAAGGTATTTCAAATGCTTAAGTTGGCAAAAGGTTTTTGGTAGCACTTGAACCCTGTAGCAGTCAGACATATCCAAAACCTCAAGTCTATAAAGATTACCAAGATCTTCTGGTAGTTGTTCTAGCTCATGGCAGTCTGAGAGGATTAGGTGCTCTAGAGACTCAAGGTTAAGACTATCTGGAAGTTTGGTTAGCTTTGAACAACTTGACAAGTTTACAAATGAGAGTTTAGCAAGGCTACCGAATTTACCAGGGAGCTTTTGAAGAGCACAACAACCTGATATGTCTAGATGCTGTAAGCATTTAAGGTTGTTAATTGATTCAGGCAACTCTTCAAGCTTAGCACACCCAGATAGGTTTAGAAAATATAGCTCAACAAGGTCTGTGACTGATGACGGCAGTTTATTAAGGTTACTATTCCTTGATAGGTCCAAATAACAAAGTTTTTGGAGGCTACCAATGTTGGCAGGCAATATTTCAAGAGAGCAATTGGAGAGAATTAGACTCTGCATATTTTGAAGTGTGTGGAAAGATTTAGGGAGGGATATAATAGGAAAGCCTGAGACATCAAGATACCCCAGCAACATCAGTCGACGAATGGAAGATGGCAGGACTGGATTGCTTGGAGTAGATTGCTCTTCATTGGACAATCCACTCAGGTCCAATATACGTATGTAACTGGTTTGAGAGAATGCTTTTCGGGGAAGTTGCATTTCAGGACATTCTCTAAAACAGAGGGTTCGTATCTTGCAGGGTATATGTTTAAAAATCTCAGTTCGCTTATGGTAGTTGACCAACTGTGCATGTCGACAGTAATGCTCATTAGCTTTGTCCCATGTTGTTGGTTTGTTGGCATCCATAACAAGGACTTCATCAGCAGCAATTATTTTTGCAAGATCATACACTAAATCATGCATGGTGAGCTTTCGTGGAGCTTTGGCATGCACTGGGCTAACCTGCAAAAATATAAAGCAGACATTGAAATTATTAGGTAGGAGTATCAATGAAATACATGTCTTTTGAACAGCTTTCATGGATGTCGAACTCTTACATGTACAGATTGAGAAATGGCAAAATCAAAGAAACAAGACAAAACAGATTACAAACACATTTATATCTATTATTCTCCAGGCTGTCAAAAAACACAATGTAATTTGTACTGCACATAGACCAATAGGAAAATAAAAGAAGATATTTACAAGGAATGCACATTTATTTTGTGTTGGAATATGAAATATGGCATGTATCAGTGAATAGACTATAAAATACTATAGGTAATAATTAGGGTTACAGGTGATAATAAATACTCACTACAGTCTCAATGGAAATAAATAGGGGCTATATTACGAAAGGTATTGCAACCCAATTTCAAGCACGAGTATAGCAAAGTAAAAATATAATATATATTGAGAATAAGTGTAATTAAAATAGAATTATGAATAAAAAATGAAGATATTGAAATGTTTGGTTACGAATGTTTGACCAATCATGCATAAAATATTCTATCAGAAACATATGTTCCTAGCAAGTAATGATGAACTATCTATGTAACCATTACTTGTAAGTTACCTACAAGAAAAATGTAAATATAAAGTCACTGTTTCATTTTACTAGCAAGGCATACTGCCATACCCCCAAATAATAAATATACAGTGCATGAATGGCCAAACAGGAACTTAAATACTTACTGATGAAGACTTGGAAATCTGAAGAAAGGACATCCCCAGAAGATAATCAATACAACTTTGACCAGTATGCCTTGCTTGAATGTATCCAAGGGCGCTCCATTGCAGGATCAGGCGGTCACTGTCCACAACGAAGCCCTTCGAGAATGATGCAAGACATGTAAAGCACATTTTGTAGTTTGGCTTCATGTAGTAATAGCTCAACAAGACGCGTTCCAAAGTGTCTCGCCGATTATCTACTATGAAATCCAAAACAATCTTTCTGTCTCTTATATCTCTCCATGCCTCAACGGTCCTTTGCTCAGACATTACTTGCCCAAGAGCATTAGCCACCAGTGGTAGTCCCCCGCACCTCCCAGCAATTTGCCTTCCGATTTCCTCTAAGCCACTTTGATCATCATCAGGTCCAAATATTCTTTGCTTCATCACCTTCCAGCAGTCATCAGGTGATAAAACATCCAAATTGATATGATCGGCCTCATGCACAGGGCATATTTTCCGCTGATTTGCAAGACAACCAGTGTGTAGTACTTGCACTACACTTCCATTGCGTGTAGTTACTATAATCTTGCTACCCTTGCCGCCATGTTGTAACATCTGCTTCAACTTTTCCAAATTTTCTCCATATTCTTCCCAGAGATCATCTAGACCAATCAAGTATCTCCTATTGGCAAGTTCTTTTATCAGATTATCTTGTACAAACTGCAAGTTGCAGTTGTCTAGGCTGATACTTCTGTTTGCTCCTCTGATGATAGCTTTCCCAATTTTGAGCAGATCAAAATCCTCTGAAACATAAACCCAGATTTTCATATCAAAGACACGGACCCTTTTGTCTGCAAAAACTGCTTGGGCTAAGGTTGTCTTCCCTAGTCCACCAAGCCCAACAATTGGAATAATTGAGATATCCTCCTTGGCTTCAGTTTTCAATAGAAGGCTGATTATTTTTTCTGTTTCAGCATCCCTCCCTAGCATTCCAATCTCCATATCATCACTGACAGTAAAAGTTTCGTTGCTTCTACTCCCTTTTGCATGTGGTTCATGACGCACAAGATTGAGCATCTTGCCATCCTTTTCTATTGCAACTATTTTATCCCTCAAGTTCTTCATGTTGCGTGCTATGGTCATTTTCTGGAGGAGCGGATTGTTCCAGGAAAAGTATAACTTGAGCTGAAAAATAAAATTGGAGTCAAAGTCACTGTCTATATTAGTGTCCTTTGTAGATCAATTTTCATCTACTCAGACTAGTCTCTGATAGTCCGATATGGATCGGGAAATGGCATGGTAGTGGAAAAGATGAATTTCCTTTTTAATTTTAGAAATTAATCGGGCTGGTATGATGCAAAAAAGTTCCACAAAGAAAATCACACATGTGCAGCAGCTGATCCGTAAAGTTGAAGCATATAACATTTATTCAAACACGACAATATGTGGAAGTACCTTGGATTGATGGTTCCTGATGAGCTGAGCAGCATCGAATTCATCCAGCACGTCCTCAACGTCGTAGGCGACGGACTTAACTTTGGAGAGCCACCGCCGTGCCACTGCTCCATCTTTTCCTACTTGGCGCACCTTATCGTCAGCATCTTGCATCACAGCAACCAGATCTCTCATCTTCTCCTTCATGTCATTCACATCATCCTTGAACCTCCACAGCAGAGTGGCCTCCTCCACTGCGAGGTCGCCAAGCTTGCTGGCGACCCGTCTCGCCACGGAACTCACAATCATCTCTCCAACCCCGCTCATGGCCTCGAAGCTACCAGCCAGCTAGAGCACAAACTCCCTATCTCTCCCACAAGAGTATATGCTGCCAATTTGTTTGTGAAAGCTCTCTTCCCACAAGTGCACTCCGTCTCTTTGCTTTAGGGAAGACCCTACCACAGTCCACCATGAGCAAAGTTATTCCATGCGACGGCATGCTCCACCTACATGTCGCTTGCATGAGCAAAGTTATTCTATTTGCCCACCAAATAGATTTTAAAATTTTTAGTGCGTTTTCCTTAATGAAATTTGGTCGACCGAACCTTTCGGCCGACCCGGCAAAAAATTTTTTAGTGCGCACACTTTGCATTGACACCTGATGTGCTGAGTAGGCAGTTTCAGTGCTTGCTATATCGTCTAAAGGCAAAATGCACTGATTCTGATAAAGCATTAAGATTTGCAAGTATCAGCATTTTGATGAAAGGAATTCATAGTTTAGTCCATGGCATAGTGCGCTTGGTAGGTGGTGCGTGGTGGCCTTCCTGGAGAGGATACATATTTAATATTTTACAGAAAAGGTTAAAGCGATGGAGTCCAAATTAATTGGAAGATAAAATTAAAATGATTTGCAATAGCCAAACAATGGTGAAACCTGGGTAATCTGTCAACAAGAAGAAATGACTATGGAGACTTATCCAACAACTTGCCTTAGATTGAATCCTTTTCAAGCCTTACAAGACATCCATTTTGGAAGGATTTACCCGGCCCGTGCGTGAGGATGAGGACCACACACTATTCAGAATTACTCCTCCGGATGGAATGGGACTGACTGAGGAACAGCCAGCAAGAAGGCAAGAATCAGGGTCGCAACTCGCAAGATGAGATTATTTCCAATTTTTTGAGTTGTGTTAGAGGAATTCGTTTCAATCCCAAATGTTGAACCGGATATACATATTTATAGAGAGAGAGAGCTTACCGATTCCAACACCAGGAAATCGAGGCGCCGCCAGCCACTGCACTTCCGCCTGTGGATAGAAGGGCTCAAGGTGCTCGGCTCGATCCATCGTTCTGCAGAGGGAGAACCCGCTCGACCGCCTCCTCCAACCCCTTCACCGCCTCGCCGCCGGTGTGTTCGCTCCGCCCTTATGGCCGACACGGGGTGAGGAGAGCATCTGCGCCGCCGCCGCCTCTGTCCTCTTGGGC
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| CDS seq | ATGCTTTATCAGAATCAGTGCATTTTGCCTTTAGACGATATAGCAAGCACTGAAACTGCCTACTCAGCACATCAGGTGTCAATGCAAAGTGTGCGCACTAAAAAATTTTTTGCCGGGTCGGCCGAAAGGTTCGGTCGACCAAATTTCATTAAGGAAAACGCACTAAAAATTTTAAAATCTATTTGGTGGGCAAATAGAATAACTTTGCTCATGCAAGCGACATGTAGGTGGAGCATGCCGTCGCATGGAATAACTTTGCTCATGGTGGACTGTGGTAGGGTCTTCCCTAAAGCAAAGAGACGGAGTGCACTTGTGGGAAGAGAGCTTTCACAAACAAATTGGCAGCATATACTCTTGTGGGAGAGATAG |
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| Protein seq | MLYQNQCILPLDDIASTETAYSAHQVSMQSVRTKKFFAGSAERFGRPNFIKENALKILKSIWWANRITLLMQATCRWSMPSHGITLLMVDCGRVFPKAKRRSALVGRELSQTNWQHILLWER |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g71100 | LOC_Os01g71100.1 | Chr01 | 41149955 | 41154678 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTTTATCAGAATCAGTGCATTTTGCCTTTAGACGATATAGCAAGCACTGAAACTGCCTACTCAGCACATCAGGTGTCAATGCAAAGTGTGCGCACTAAAAAATTTTTTGCCGGGTCGGCCGAAAGGTTCGGTCGACCAAATTTCATTAAGGAAAACGCACTAAAAATTTTAAAATCTATTTGGTGGGCAAATAGAATAACTTTGCTCATGCAAGCGACATGTAGGTGGAGCATGCCGTCGCATGGAATAACTTTGCTCATGGTGGACTGTGGTAGGGTCTTCCCTAAAGCAAAGAGACGGAGTGCACTTGTGGGAAGAGAGCTTTCACAAACAAATTGGCAGCATATACTCTTGTGGGAGAGATAG
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| Protein seq | MLYQNQCILPLDDIASTETAYSAHQVSMQSVRTKKFFAGSAERFGRPNFIKENALKILKSIWWANRITLLMQATCRWSMPSHGITLLMVDCGRVFPKAKRRSALVGRELSQTNWQHILLWER |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.438429 | 0.517993 | 0.582771 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046380 | SBH | 0.132912 | 6.317603 | 5.871472 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045890 | SBH | 0.266118 | 6.178813 | 3.314190 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046260 | SBH | 1.107277 | 12.062038 | 12.954419 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0677500 | SBH | 1.1574795 | 22.944889 | 1.908075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0679400 | SBH | 1.3340915 | 12.6515895 | 3.644632 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045630 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
