Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g68490 | OGI:01117850 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:39794226-39799341 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACATCTATGATACTGATTCCATGTTACCGTCAATCGTGAGGCCATCAGTTCCAGACACAAAGAGCCATCTACAAATGTTAGACAAGCTCTCTCCTCCATGAAACCTCAGAGATGCGCAGGCACCACACAACCCGATCTTTCAGATACCGGAAATGCCCCATCCCACAGAAAGCTATAGGTGGAGTGCCACCACAAAAGTGCAGGAATTACCTGGGGCAGCCATGTCATTTCCCCGCCAAGAAACTATCTCCACTAGAAAGGCTATGAATACCGCCAAGCAATGCAAGATATCCTTTCAAGCTCACCACTCATCTGCCGCTGCCGCTGCTGAAGAAAAACGCACATCCTTCCTTCCTAGCACCAACTCGCCACCCAATTAGGCCATTACCTTCCAAAATTCTCCCATCCAATGGCGCTACGCCTCTCCGTCTCCTCCTCGCACGGGCCGGCTTCCTCGCCGGCCATCTCCACATGCCGCCCCGCCGCCTGCGGGCGCTTCCCCGCCTTGCTCGGCGGCGGTGTGGCTTCTCAGAGGAGGAGCCTGACGGTGGTGTCTGGCCCTGAGACAAGGGCGGTGATCCCCGTGAGGTCGAGCGGCTCGGACACCGCCACTGTTGGGGCCGAGGCGGAGGCGGTGGCCGTGACCGGGCAGGTGACGGAGGTGAACAAGGATACCTTCTGGCCAATTGTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGGTACTTCACAAAAGCCACAAAACTCCACTGATCTCTTCGCGTCAATCTCCATTGATGAACTGTTGCCTCGCATGAATTCTTCAGTCTTATCACGAGCTGGATTTATTTTGAAATGAGCGGCGTGAATAAGAAAGGGAACAGATCTCATCCCACTGCTCAGTGTAATAACTGTAAAACTGACTGGTTGATTTGCAGGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGGTCAGTTAGAACTGATTTTCTTTCTCTTGTCTACGCTCCACCCACCATTATTCGATTGGAATGTATCTGCTGTTTTCCTGAATAAATCGTGCTAAGCCTCCTTGGTGCGTGCGATTCGCAGTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTCAAGGACGGGAAGGTCGTCAAGGAGGTCACAGGTGCCAAACTAGATGAATTAATCCAAGCGATCGAGACGGTGAAGTCAAGCTGAGGAATGCCCTGAAAATTTGCATCAGTTAGCTTGTTGTCACTAGTGTACGTTATGGGTGAACCACCAGTTATTGAAGTGGGTATTCGACATGGAGACAAACAGTTAATCTAGTTCTTCTGCCTATGATGATTTATCAAGCATCCAGAACAATATACGGCCATTTATATGGAATGCACCATGTAAATAACTATTTCCAACGTCATGATGATCTGTTTTCTAATCTTACTGATTTGCAAGTGAACATTGTATTCATGGTTAGCAAAATTTCAAAATATATCAACAAATTTCCAGCTGAACCATCATAGTTTAAACATTCGGATGCCGGTTTTTTTTTATGACACATCTTAAATTCTTGATAACACAGATACCTACCTAAGATGACGAGCTTAAATTGCAAGTGTCATGAAACTATACTCAATTCTTCTAGAGATAAACAAGCATATTTTTTTAAAAAAAAACATGGCTCAATGAACACATAAAAGGATCAAAGTAATTTATCATGGCAAATTTCAGACATGACATGAACCATGAAGAATTGAAGTTACCTTAACGACAAACTGATCCATAGATCATCCGCCCCTGATAATTAGCTTGTTTAAAACCAGCTTAGCTTGCAGCATCTCAGAAAAGTTAACAATCTTGCAGCAACGAGAATTGTCTATCAATTCCTTGTAGTCAGACTACTATGCTCCCGCTGTCAAGAGTGAAATCAGGCTGATCAATAATACCCAGAATAATTGCACCAATTAGCATCCTTTCGTGAAAGTGGATAATGAACATGGAGAAAAAACTATTGTTCTAGTTCTTCTGCACATGATTTACCAAACATTCAGAACAAAATACAATCATGCATGATGGTGATGCAAATAATCGTTCCATACTTCATGTCTTCGTGAGGAGACTGTTACTTTCTGAAATTATTGATTTGGAAGCGATCGACATGCTCTTGCCTGAGCATTTTCTGCATACTAGATTACAGAAAATTTTCTTTCTAAACTCTTGCAGTTACAAGCATTAAGATATGGATTGCAAATTGCCTTATTTGCTTACCCCACACCATTTATTAAAATATCTTGCCAAACAATTATCTAAGATATAGAGGTTAAAATACAAGTGTTGGTATTATGCTGTACCGCATCAATTCATTGAGATGCCAAACTTACTAAAGCAATAAAGTTATCTGAATACTTCCACAAAATAATTTGCATTGGGATCTTTCAGATATAACATGAACTGTAAAGAAGTGAAAGTACCTTAATGGCATCAGTAGCTCCTGCATTTCTGGCAGTTCAATAAGATCTGTTTGGCATCATCTGAAAATTTACATTTGAAACAAAGAGAGATATGTGTTCGGGTTTTCAGCTCCTCAAAGGAAACCTGCCACGCTCCCTCTGTCGATCCTCCACCCAACTAGAGCCTGGCTGTTTGAAGGGCAGTCTTGTTCTCATAACTGATCTAATTCTTTCTGCCTCCTCCCATTGTTCTTTCTCAGCATATATATTTGACAACATTATATAGTTCCCAGTGTTGTGAGGTTCCAACTCAAAAAGTTTGTTTGCAACAATTTCAGCAATCTCAACATTGCCATGCGTCTTGCAGGCACTAAGCAATGCACCAAGAGCCCCTGGGTGGGGGCCCATTGGCATCGTTTGCACCATTTCAAAAGCCTCCTCAAGCCTCCCCGCTCGGCCAAGCATGTCAACTACACAAGCATAGTGATCAGCTCGACGCTCCATCCCATAGTACTTCACCATTGCCTCCCAGTAATCCAAACCTTTATCGACAAGTCCTGCATGGCTGCATGCGGTAAGCACACCGACGAAAGTGATTGGATCAGGCCAAACTGACTGAGCTTGCATCCTTTCAAACACTTGAAGCGCTAATTTTGCATGACCATGAGCTGCCAGCCCACTAATAAGTGCAGTATAAGGGTATGCATCTGGCTGTGCAATCTCCCTAAAAGCACTGAGAGCCTCGTCAACATTCCCACACTTAGCATGCATATCTACAAGTGCTGTAAGAACTTTATCGTTCCTTTCAATCCTCTTCTTGTCAACATAACTTCCAACCCACCCAGCCAACTCCGTGCTGCCAATCTGCGAGGCAGCAGATATAACGCCGACCATAGTTGCTGCATCAGGCTCAATCCCAGCAGCCTCCATTTCTCTAAACAGCGCAAGTGATTCCTTTGGCACCCCACTCTGCGCATACCCATTGATCATCGCTGTCCATGCCACAAGATTCTTTGCCGGCATTCTATCGAACACCTCTCGTGCACTCCGCATTGAACCACACTTGCAGTACCCAACAATCAGCACCGACCACGAGGTGGAGTCCCTGGTAGGCATTTGATCGAACACGCGGCGAGCAGAAGAGACGTCCCCTGCATTGACGTAGACGACCACCATGGCGTTCCACGATACCTGGGTTCTGGATGGCATGGCAACAAAGAGGGACTCGGCGTCGGGCACGGAGGCGAGGCGGGCGTGCGCGCAGAGGAGCGAGTTGAACGAGACGGCGTCGGGGGCCGCGATGTCGGCGAGCGCGGTGTGTGCGGCGGGGAGATCGTCGCACTTGGCGTAGAGATCAACGAGCGCGTTGGCGACGGGGAGGCGGCAGGGGAGGAGCGCGAGGCGGAGGGCGAGCGCGTGCAGGGAGGCGCCGAGCGGGAGCAACCGGAGCGACGCGGCGGCGTTGAGCGCGAAGGGGAGGGAGAAGTGGTCGGGGGAGACGGGGAGGCGCGGCATGAGGAGGAGCAGGCGGAGCGCGGCGCGCGGGTGCGGCTTGGAGAGGCGGCGAATGGCGCGGTTGAGGAGGGACCGGATGACGGGGGGCGGCGTGCCGGCGTGCGCGCGGACGAGATGCGCGTGGACCGCGGCGGCCGCCGGCGGCGGGTGGTCGGAGGCGAGGGCACGCGAGAGGCGGTCGAGGCGCGGGTCGCCGCCGTGCTGGGACGCCATGGGAGGTGGCCCAGCTGTGGTCGGTGGAGGCGATTGAGTCAGGAGCAAGAAATAAGGGAGGCAAAGTAGACTTCCACTGTGCCGGAGACGTGTAGTTGGGGTTGCGGTTTTTTTTTGTATCTTGGGCCTTTTGAACCAGACTGGGCTTTTCCTGAGTTTGACGGCCCAATTAATTTACCTGTCCCTCCTTGTTTTTAATTAGGGCCGTTTTGGTTTGATACCAAAACATGCCTTTCCACTTTGTTGGCAAACTGAATAATATGTGTGTTAGTTTGGACTAACACCAAATATTTGGTAGTGCCTACCTTATTTGGTCATATTCTAGAAGTTTCTCCTCTATACTATAAGAGTTTGGTTTTATATTGGTAGCAATCCAAATATTAGCTAAATAACTTTACCCTACAATATTTTGATAGTGCCGGAGTTTACCTAGAATTTGGCACTACCAATGAATTCAGGCGTTAATATGCAGTTTACTGGTGTGATGAGATCATGAGAAGAGTGACACACACAGGCACACGGGTGACAAATGCCTAATGGTTCATGTCTCCCTATATTTCACATTTTTACTGCAAAAAAGTTCTTTTGGACACACCTCTGTGTGCAAATTGTACGGCACTCTGGCTCTTTCCCTGAATGGAATTGGAATCAATATCAGAAAGTTGTATCTGATGTCAAATAGATCGTATACCATTAAGGCATTTTACCATACGAACATCTGCTCCAAAAATAAATACGTAAAGTTCAAGCTATGATCAGTGTCATCCAACCAGCTAGCCATCCGGCACTACAATTGACCTGGCGATTGGTTGTCTAACGACGGATAGAAATGCATGAATGCGAAGACACGCAAACAGCACGTTCCA
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| CDS seq | ATGGCGTCCCAGCACGGCGGCGACCCGCGCCTCGACCGCCTCTCGCGTGCCCTCGCCTCCGACCACCCGCCGCCGGCGGCCGCCGCGGTCCACGCGCATCTCGTCCGCGCGCACGCCGGCACGCCGCCCCCCGTCATCCGGTCCCTCCTCAACCGCGCCATTCGCCGCCTCTCCAAGCCGCACCCGCGCGCCGCGCTCCGCCTGCTCCTCCTCATGCCGCGCCTCCCCGTCTCCCCCGACCACTTCTCCCTCCCCTTCGCGCTCAACGCCGCCGCGTCGCTCCGGTTGCTCCCGCTCGGCGCCTCCCTGCACGCGCTCGCCCTCCGCCTCGCGCTCCTCCCCTGCCGCCTCCCCGTCGCCAACGCGCTCGTTGATCTCTACGCCAAGTGCGACGATCTCCCCGCCGCACACACCGCGCTCGCCGACATCGCGGCCCCCGACGCCGTCTCGTTCAACTCGCTCCTCTGCGCGCACGCCCGCCTCGCCTCCGTGCCCGACGCCGAGTCCCTCTTTGTTGCCATGCCATCCAGAACCCAGGTATCGTGGAACGCCATGGTGGTCGTCTACGTCAATGCAGGGGACGTCTCTTCTGCTCGCCGCGTGTTCGATCAAATGCCTACCAGGGACTCCACCTCGTGGTCGGTGCTGATTGTTGGGTACTGCAAGTGTGGTTCAATGCGGAGTGCACGAGAGGTGTTCGATAGAATGCCGGCAAAGAATCTTGTGGCATGGACAGCGATGATCAATGGGTATGCGCAGAGTGGGGTGCCAAAGGAATCACTTGCGCTGTTTAGAGAAATGGAGGCTGCTGGGATTGAGCCTGATGCAGCAACTATGGTCGGCGTTATATCTGCTGCCTCGCAGATTGGCAGCACGGAGTTGGCTGGGTGGGTTGGAAGTTATGTTGACAAGAAGAGGATTGAAAGGAACGATAAAGTTCTTACAGCACTTGTAGATATGCATGCTAAGTGTGGGAATGTTGACGAGGCTCTCAGTGCTTTTAGGGAGATTGCACAGCCAGATGCATACCCTTATACTGCACTTATTAGTGGGCTGGCAGCTCATGGTCATGCAAAATTAGCGCTTCAAGTGTTTGAAAGGATGCAAGCTCAGTCAGTTTGGCCTGATCCAATCACTTTCGTCGGTGTGCTTACCGCATGCAGCCATGCAGGACTTGTCGATAAAGGTTTGGATTACTGGGAGGCAATGGTGAAGTACTATGGGATGGAGCGTCGAGCTGATCACTATGCTTGTGTAGTTGACATGCTTGGCCGAGCGGGGAGGCTTGAGGAGGCTTTTGAAATGGTGCAAACGATGCCAATGGGCCCCCACCCAGGGGCTCTTGGTGCATTGCTTAGTGCCTGCAAGACGCATGGCAATGTTGAGATTGCTGAAATTGTTGCAAACAAACTTTTTGAGTTGGAACCTCACAACACTGGGAACTATATAATGTTGTCAAATATATATGCTGAGAAAGAACAATGGGAGGAGGCAGAAAGAATTAGATCAGTTATGAGAACAAGACTGCCCTTCAAACAGCCAGGCTCTAGTTGGGTGGAGGATCGACAGAGGGAGCGTGGCAGGTTTCCTTTGAGGAGCTGA
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| Protein seq | MASQHGGDPRLDRLSRALASDHPPPAAAAVHAHLVRAHAGTPPPVIRSLLNRAIRRLSKPHPRAALRLLLLMPRLPVSPDHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEAERIRSVMRTRLPFKQPGSSWVEDRQRERGRFPLRS |
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| Function | Pentatricopeptide repeat-containing protein At3g29230 [UniProtKB/Swiss-Prot:Q9LS72] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g68490 | LOC_Os01g68490.1 | Chr01 | 39794226 | 39799341 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTCCCAGCACGGCGGCGACCCGCGCCTCGACCGCCTCTCGCGTGCCCTCGCCTCCGACCACCCGCCGCCGGCGGCCGCCGCGGTCCACGCGCATCTCGTCCGCGCGCACGCCGGCACGCCGCCCCCCGTCATCCGGTCCCTCCTCAACCGCGCCATTCGCCGCCTCTCCAAGCCGCACCCGCGCGCCGCGCTCCGCCTGCTCCTCCTCATGCCGCGCCTCCCCGTCTCCCCCGACCACTTCTCCCTCCCCTTCGCGCTCAACGCCGCCGCGTCGCTCCGGTTGCTCCCGCTCGGCGCCTCCCTGCACGCGCTCGCCCTCCGCCTCGCGCTCCTCCCCTGCCGCCTCCCCGTCGCCAACGCGCTCGTTGATCTCTACGCCAAGTGCGACGATCTCCCCGCCGCACACACCGCGCTCGCCGACATCGCGGCCCCCGACGCCGTCTCGTTCAACTCGCTCCTCTGCGCGCACGCCCGCCTCGCCTCCGTGCCCGACGCCGAGTCCCTCTTTGTTGCCATGCCATCCAGAACCCAGGTATCGTGGAACGCCATGGTGGTCGTCTACGTCAATGCAGGGGACGTCTCTTCTGCTCGCCGCGTGTTCGATCAAATGCCTACCAGGGACTCCACCTCGTGGTCGGTGCTGATTGTTGGGTACTGCAAGTGTGGTTCAATGCGGAGTGCACGAGAGGTGTTCGATAGAATGCCGGCAAAGAATCTTGTGGCATGGACAGCGATGATCAATGGGTATGCGCAGAGTGGGGTGCCAAAGGAATCACTTGCGCTGTTTAGAGAAATGGAGGCTGCTGGGATTGAGCCTGATGCAGCAACTATGGTCGGCGTTATATCTGCTGCCTCGCAGATTGGCAGCACGGAGTTGGCTGGGTGGGTTGGAAGTTATGTTGACAAGAAGAGGATTGAAAGGAACGATAAAGTTCTTACAGCACTTGTAGATATGCATGCTAAGTGTGGGAATGTTGACGAGGCTCTCAGTGCTTTTAGGGAGATTGCACAGCCAGATGCATACCCTTATACTGCACTTATTAGTGGGCTGGCAGCTCATGGTCATGCAAAATTAGCGCTTCAAGTGTTTGAAAGGATGCAAGCTCAGTCAGTTTGGCCTGATCCAATCACTTTCGTCGGTGTGCTTACCGCATGCAGCCATGCAGGACTTGTCGATAAAGGTTTGGATTACTGGGAGGCAATGGTGAAGTACTATGGGATGGAGCGTCGAGCTGATCACTATGCTTGTGTAGTTGACATGCTTGGCCGAGCGGGGAGGCTTGAGGAGGCTTTTGAAATGGTGCAAACGATGCCAATGGGCCCCCACCCAGGGGCTCTTGGTGCATTGCTTAGTGCCTGCAAGACGCATGGCAATGTTGAGATTGCTGAAATTGTTGCAAACAAACTTTTTGAGTTGGAACCTCACAACACTGGGAACTATATAATGTTGTCAAATATATATGCTGAGAAAGAACAATGGGAGGAGGCAGAAAGAATTAGATCAGTTATGAGAACAAGACTGCCCTTCAAACAGCCAGGCTCTAGTTGGGTGGAGGATCGACAGAGGGAGCGTGGCAGGTTTCCTTTGAGGAGCTGA
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| Protein seq | MASQHGGDPRLDRLSRALASDHPPPAAAAVHAHLVRAHAGTPPPVIRSLLNRAIRRLSKPHPRAALRLLLLMPRLPVSPDHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEAERIRSVMRTRLPFKQPGSSWVEDRQRERGRFPLRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.880072 | 0.899658 | 0.323901 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0912900 | RBH | 1.414032 | 1.534268 | 1.258260 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68610 | RBH | 0.0 | 0.224359 | 0.184386 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0912900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044560 | RBH | 0.135866 | 0.0 | 0.456594 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0044110 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044490 | RBH | 0.0 | 0.839223 | 0.953344 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043950 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043520 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0656400 | RBH | 0.312323 | 0.504141 | 0.978314 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0043170 | RBH | 0.0 | 0.230954 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0658200 | RBH | 0.7038285 | 0.6832325 | 2.5551775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0043500 | RBH | 0.006373 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043460 | RBH | 0.0 | 2.174978 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043740 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043700 | RBH | 0.0 | 0.0 | 0.331475 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043510 | RBH | 0.0 | 0.995017 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043900 | RBH | 0.0 | 0.640338 | 0.255467 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043620 | RBH | 0.0 | 0.0 | 0.0 |
