Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g62910 | OGI:01108720 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:36438948-36442944 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAACTAAACTTGATTGTGTTAAATATATGTTCATTTCAGTGCACACACAGATTGCATTATCACTACTGATGGAAAGGCAGCAGAGACTTTTCTACAGCAAGTTGATAGGTGTTTAACTAATTTCCTTTGCACAACTATTATGTTTGCCGCTTTTAGTACATACCTTAATTAATGGAGTTATTCTTCTATAAATTGCAACAGTGCTGCGGTATTCCATAATGCAAGCACACGGTTCTGTGATGGGGCTCGCTTTGGTCTAGGTGCTGAGGTATGTCCTTTAAATTTGTATCACTTTATAACTTGGACATTTTCGTTAACTAGTTATCAAAAAAAAATAGTTATCGAAAATATATGTTGTTACTATTGAATGGTCAGCGTTTCATTCAGTCCCCTATTTTCTTTCCTTTATCAAATATAGGTTGGCATAAGCACAGGGCGCATACATGCTCGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATGGTAGGGTTATCATGCCATATTGTCTTCATGTCCAAACATTAAGGACAATACTATTGTGCAAGATGTTTTCTGCATCTAGCATTTTATCATCATACAATATTTTTTCAGCTAAATGTTATTATCATACTAAACAGATGGAAAAAATCAGTAGTTTTGTATTTACTACTAGTATCTTCATGTAATATGTGTGCATTGGTTTTTCGTTATATATAGCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTACACCCACAGGGAGCTCCCTTTGCAGTGAGGTAGGTAGTGTTCTTTTATTTTGAAAGATGGCATACTACTGATTACTAACCTTCAACATCTCTGGTTTCAGGTGAAGTGGCTTGTGAAGGAGCTGTTGTAGAGCAATTTTTTGCAGACGCTCACCGTGCTCCTCCTTGAGAGCTGCTTCTCTTCATGACATGCAATGGGAGCACGAAAGCATGTCAAAGCAGGAAGTAATGAAGGGCGAAGTAGGTCAGAAACTTATAGTACTATGTACTATGGTGTTGCTACGTAGTTGTGTGGTATTCCTTATTATTCATTGTACCATGAATAATTTATGCCAATGTCGTAGTAGCTACATGTAACTATATTGGCTTTCATGGACACGTCTATGGTACTAGATGTAAAACTGCTAGATGGCTTTAGATGAACATCTCAGATTTATTTTCCATAGAATGCACATATGAAAGTACCTGAGCGTGGCGACGCTGGTGCTTTCCATGATAAAGATCTGGCTGGTGTAGGGCGGTCTGCTGCTGAAGCCGGAGACATGCACATCGCAGAAGCCTAATCATCAGACTGGAGCCTCAACTGAACCATCCCGTATCTGATCTGTTTAGATAAAGACAGTTATATTAGAAATCGCCAATAAGTCTCGGACGAAAATTCCCAGCATTTCACAACTTAAGAAGTTCAGAATTCTAGCAGCTATTCGTAATGCATCCCATTGCAGTATTGCATAACAAATTACAGAGATGAATATCAATCTCCCAGCTCAGGGCCTCTAACCATGACAGATGGTAGATACTCTCGTATCAGTGTCAACATTAGGTGGGGATATTACAATATTACATCCATGTCTGGTATCCACAGTACCATCACCATTCCAAATGTGTCAGGATACCGTTACTACTACTGATGTGTTAAACAGGGATCCATCACAAATGTATCAAAATTGTCTGGCAGAGATTCCAATTCTCTCCAAACAAACAACTCAGCAATCTTTTGAGGTACCTCCTGAAAGACTGAGTCATGATGGCTAGTCTAATCAATATGTTAGGCTATACAACAATTCCTACGTCTTCAGTGGTTATTCTGTATAAATCAGTAAAGCTCCCAAAAAACATTAATAGAGTCCGCAGCATCTTCACCAATAATCCCCACATGAACAAATTCCATCCCTGAAGTGGTGAAACCGATTCACATCCCTCACAATAATCTCTCGCTCTGCATATTTGGAGATGAACTTGGTGACGGAATGACAGTCCTCACATAGCCTGAGGTTCTTGGTGATCCTGATGACTTCTCCCCTGCCAGTGTTGATAAGCCCGAAGGCAACAGCTAGCTTCTCACTGTGCCCAAGCAAAATCTTCTCCTTCTCTTCTTCTTCAATATCATACAAAACAGCTCCTGTGTCAGGCACATAGCCATCATTCTTCATCTGTGTCACAAACTCACCTATCAGAGCTTGGAGCTCCTCAATCTGAGGATTCTTGTTGTCCACAGAGACAAACATGTGCAATCTCTTCTTCACCTCTATCCAGCTGCATCCAGGCACCTTCTCCAACGCATGCTCCTCAAGAAGATCCTTTAGCACACCAACTTCACTATGCAACTTAGCTCGAGCATAGATATCAGCAAGGAGTACATAATTTCCAGCATTTCTAGGCTCAAGATCAAAGAGTTGTGAGCAAGCCATCTCCGCATACTCCACATGGCGATGAATCCTGCAAGCACCAAGAAGTGAGCCCCACACTTGAGGACTCGGCCTAATGTGCATTCCCTGTATGAGCTCAACGGCTTCGTCCAAATGCCCGGCACGACCAAGGAGATCTACCATGCAGGCATAGTGCTCTGCACGAGGGGTGACATTATAATCCACCATCGACTCAAACAGCCTCTTCCCCTCATCCACGAGTCCAGCATGGCTACAAGCCCCAAGGACACTGATAAATGTGATGATATTGGGTGAAACGCCCATTTGGGTCATGTCTTCAAACACCTGAACCGCTTCATGGCCAAATCCATGCATCCCATATCCAGATATGAGTGTATTCCATGACACAACATCCTTCCGGTGTCCTATTAAATCAAAGATATGCCGCCCAGCTTCAAGACATCCACATTTCATGTACATCGCCATCAATGCGTTCAGAACTGAAACAAGTGAGTCAAAACCCCTCCGGAGGATATACGCATGCAACAATTTGCCCTGCCCGAGAGCGTTAACTCCAGCAAAAGCATGCAAGATGCATACTATTGTGACTGAATTGGGTACAAGGTCTTCATCAGAAGCCACCATCTCCTGGAATAGCAAAATGGCATCACCTGGTCTCTCGTTCTTGGCATAGCACCCAATCATGGCAGTCCACGACACAACATTCCTCTCTGGCATTGTAGCAAACACACTCTCAGCATAGCTGACGATTCCAAGCTTTGCGTAGCAGTCAATAAGAGTGGTGGCGACATGTGTGTGCAATCCGTAGCCACGACGGACAGCATGCGCATGTATCTCGCGTACGAGGGCCGACGCCGGCACATGAGACGTTGATGCGGCAATGCAGGCCTTGAGTCCGTGCGCGTAGCTGTAGCTGTCGACCGGAACGCGGAGCCGCCCCATGTCAGCCAGGCGCGCGAGGGCCTCCTCGCCATGGTCGGCGAGCGCGAGCGCCTTGAGCAGCGCGTTCCACACGAAGATGCTCTTCACGGGCGCCTCGTCGAACACCTGGCGTGCGGCCGGGAGCTCGCCGAGCGACGCGTAGGCGTCGATGAGGCGGGTGGAGAGGAACGGGTCGGAGCGGAAGACGGGGTCCGCCTTGAGCCGCCGGTGCACGGCCGCGGCGAGCGCCGCGTCCCCGGCCCGCGCGGCGGCGAGGAGGACCGACTTGTAGGTGCGCTGCGTGGGCGCGGGGAGGCCCTGGAGGAGCGCCGCGGCGCGCGCGAGGCGGCCGCTGGCGCACAGCGTCTGCACGAGGTGGTTCGCGTTCGCGGGCGGCGGCGTCGGCGGCTGGGACGCGAGCGACGCCACGCACCTGGACCGCGACACCCTCGGGCGCGCCCTGGGCCCGGCCGCCGGGCGGGAGAGGTGGAAGAGGGAGGCGGGCGGCGAGGCGGGCGCGGGGGCGGACATGGGGTGGAGGAGGCGGAGGCGGAGCGTGCGCGGCGCGAGTGGCTTCACCGTGTTCGGGATATTTTTCCGGTGCGGTGTGGTCGGAGTTCGGGCAGCGGATGGGGAGAGAGGCGGAGGCGCGCC
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| CDS seq | ATGTCCGCCCCCGCGCCCGCCTCGCCGCCCGCCTCCCTCTTCCACCTCTCCCGCCCGGCGGCCGGGCCCAGGGCGCGCCCGAGGGTGTCGCGGTCCAGGTGCGTGGCGTCGCTCGCGTCCCAGCCGCCGACGCCGCCGCCCGCGAACGCGAACCACCTCGTGCAGACGCTGTGCGCCAGCGGCCGCCTCGCGCGCGCCGCGGCGCTCCTCCAGGGCCTCCCCGCGCCCACGCAGCGCACCTACAAGTCGGTCCTCCTCGCCGCCGCGCGGGCCGGGGACGCGGCGCTCGCCGCGGCCGTGCACCGGCGGCTCAAGGCGGACCCCGTCTTCCGCTCCGACCCGTTCCTCTCCACCCGCCTCATCGACGCCTACGCGTCGCTCGGCGAGCTCCCGGCCGCACGCCAGGTGTTCGACGAGGCGCCCGTGAAGAGCATCTTCGTGTGGAACGCGCTGCTCAAGGCGCTCGCGCTCGCCGACCATGGCGAGGAGGCCCTCGCGCGCCTGGCTGACATGGGGCGGCTCCGCGTTCCGGTCGACAGCTACAGCTACGCGCACGGACTCAAGGCCTGCATTGCCGCATCAACGTCTCATGTGCCGGCGTCGGCCCTCGTACGCGAGATACATGCGCATGCTGTCCGTCGTGGCTACGGATTGCACACACATGTCGCCACCACTCTTATTGACTGCTACGCAAAGCTTGGAATCGTCAGCTATGCTGAGAGTGTGTTTGCTACAATGCCAGAGAGGAATGTTGTGTCGTGGACTGCCATGATTGGGTGCTATGCCAAGAACGAGAGACCAGGTGATGCCATTTTGCTATTCCAGGAGATGGTGGCTTCTGATGAAGACCTTGTACCCAATTCAGTCACAATAGTATGCATCTTGCATGCTTTTGCTGGAGTTAACGCTCTCGGGCAGGGCAAATTGTTGCATGCGTATATCCTCCGGAGGGGTTTTGACTCACTTGTTTCAGTTCTGAACGCATTGATGGCGATGTACATGAAATGTGGATGTCTTGAAGCTGGGCGGCATATCTTTGATTTAATAGGACACCGGAAGGATGTTGTGTCATGGAATACACTCATATCTGGATATGGGATGCATGGATTTGGCCATGAAGCGGTTCAGGTGTTTGAAGACATGACCCAAATGGGCGTTTCACCCAATATCATCACATTTATCAGTGTCCTTGGGGCTTGTAGCCATGCTGGACTCGTGGATGAGGGGAAGAGGCTGTTTGAGTCGATGGTGGATTATAATGTCACCCCTCGTGCAGAGCACTATGCCTGCATGGTAGATCTCCTTGGTCGTGCCGGGCATTTGGACGAAGCCGTTGAGCTCATACAGGGAATGCACATTAGGCCGAGTCCTCAAGTGTGGGGCTCACTTCTTGGTGCTTGCAGGATTCATCGCCATGTGGAGTATGCGGAGATGGCTTGCTCACAACTCTTTGATCTTGAGCCTAGAAATGCTGGAAATTATGTACTCCTTGCTGATATCTATGCTCGAGCTAAGTTGCATAGTGAAGTTGGTGTGCTAAAGGATCTTCTTGAGGAGCATGCGTTGGAGAAGGTGCCTGGATGCAGCTGGATAGAGGTGAAGAAGAGATTGCACATGTTTGTCTCTGTGGACAACAAGAATCCTCAGATTGAGGAGCTCCAAGCTCTGATAGGTGAGTTTGTGACACAGATGAAGAATGATGGCTATGTGCCTGACACAGGAGCTGTTTTGTATGATATTGAAGAAGAAGAGAAGGAGAAGATTTTGCTTGGGCACAGTGAGAAGCTAGCTGTTGCCTTCGGGCTTATCAACACTGGCAGGGGAGAAGTCATCAGGATCACCAAGAACCTCAGGCTATGTGAGGACTGTCATTCCGTCACCAAGTTCATCTCCAAATATGCAGAGCGAGAGATTATTGTGAGGGATGTGAATCGGTTTCACCACTTCAGGGATGGAATTTGTTCATGTGGGGATTATTGGTGA
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| Protein seq | MSAPAPASPPASLFHLSRPAAGPRARPRVSRSRCVASLASQPPTPPPANANHLVQTLCASGRLARAAALLQGLPAPTQRTYKSVLLAAARAGDAALAAAVHRRLKADPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMVDYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEEEEKEKILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNRFHHFRDGICSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At3g46790, chloroplastic [UniProtKB/Swiss-Prot:Q9STF3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g62910 | LOC_Os01g62910.1 | Chr01 | 36438948 | 36442944 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCCGCCCCCGCGCCCGCCTCGCCGCCCGCCTCCCTCTTCCACCTCTCCCGCCCGGCGGCCGGGCCCAGGGCGCGCCCGAGGGTGTCGCGGTCCAGGTGCGTGGCGTCGCTCGCGTCCCAGCCGCCGACGCCGCCGCCCGCGAACGCGAACCACCTCGTGCAGACGCTGTGCGCCAGCGGCCGCCTCGCGCGCGCCGCGGCGCTCCTCCAGGGCCTCCCCGCGCCCACGCAGCGCACCTACAAGTCGGTCCTCCTCGCCGCCGCGCGGGCCGGGGACGCGGCGCTCGCCGCGGCCGTGCACCGGCGGCTCAAGGCGGACCCCGTCTTCCGCTCCGACCCGTTCCTCTCCACCCGCCTCATCGACGCCTACGCGTCGCTCGGCGAGCTCCCGGCCGCACGCCAGGTGTTCGACGAGGCGCCCGTGAAGAGCATCTTCGTGTGGAACGCGCTGCTCAAGGCGCTCGCGCTCGCCGACCATGGCGAGGAGGCCCTCGCGCGCCTGGCTGACATGGGGCGGCTCCGCGTTCCGGTCGACAGCTACAGCTACGCGCACGGACTCAAGGCCTGCATTGCCGCATCAACGTCTCATGTGCCGGCGTCGGCCCTCGTACGCGAGATACATGCGCATGCTGTCCGTCGTGGCTACGGATTGCACACACATGTCGCCACCACTCTTATTGACTGCTACGCAAAGCTTGGAATCGTCAGCTATGCTGAGAGTGTGTTTGCTACAATGCCAGAGAGGAATGTTGTGTCGTGGACTGCCATGATTGGGTGCTATGCCAAGAACGAGAGACCAGGTGATGCCATTTTGCTATTCCAGGAGATGGTGGCTTCTGATGAAGACCTTGTACCCAATTCAGTCACAATAGTATGCATCTTGCATGCTTTTGCTGGAGTTAACGCTCTCGGGCAGGGCAAATTGTTGCATGCGTATATCCTCCGGAGGGGTTTTGACTCACTTGTTTCAGTTCTGAACGCATTGATGGCGATGTACATGAAATGTGGATGTCTTGAAGCTGGGCGGCATATCTTTGATTTAATAGGACACCGGAAGGATGTTGTGTCATGGAATACACTCATATCTGGATATGGGATGCATGGATTTGGCCATGAAGCGGTTCAGGTGTTTGAAGACATGACCCAAATGGGCGTTTCACCCAATATCATCACATTTATCAGTGTCCTTGGGGCTTGTAGCCATGCTGGACTCGTGGATGAGGGGAAGAGGCTGTTTGAGTCGATGGTGGATTATAATGTCACCCCTCGTGCAGAGCACTATGCCTGCATGGTAGATCTCCTTGGTCGTGCCGGGCATTTGGACGAAGCCGTTGAGCTCATACAGGGAATGCACATTAGGCCGAGTCCTCAAGTGTGGGGCTCACTTCTTGGTGCTTGCAGGATTCATCGCCATGTGGAGTATGCGGAGATGGCTTGCTCACAACTCTTTGATCTTGAGCCTAGAAATGCTGGAAATTATGTACTCCTTGCTGATATCTATGCTCGAGCTAAGTTGCATAGTGAAGTTGGTGTGCTAAAGGATCTTCTTGAGGAGCATGCGTTGGAGAAGGTGCCTGGATGCAGCTGGATAGAGGTGAAGAAGAGATTGCACATGTTTGTCTCTGTGGACAACAAGAATCCTCAGATTGAGGAGCTCCAAGCTCTGATAGGTGAGTTTGTGACACAGATGAAGAATGATGGCTATGTGCCTGACACAGGAGCTGTTTTGTATGATATTGAAGAAGAAGAGAAGGAGAAGATTTTGCTTGGGCACAGTGAGAAGCTAGCTGTTGCCTTCGGGCTTATCAACACTGGCAGGGGAGAAGTCATCAGGATCACCAAGAACCTCAGGCTATGTGAGGACTGTCATTCCGTCACCAAGTTCATCTCCAAATATGCAGAGCGAGAGATTATTGTGAGGGATGTGAATCGGTTTCACCACTTCAGGGATGGAATTTGTTCATGTGGGGATTATTGGTGA
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| Protein seq | MSAPAPASPPASLFHLSRPAAGPRARPRVSRSRCVASLASQPPTPPPANANHLVQTLCASGRLARAAALLQGLPAPTQRTYKSVLLAAARAGDAALAAAVHRRLKADPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMVDYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEEEEKEKILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNRFHHFRDGICSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.362522 | 1.085478 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0848300 | RBH | 2.015899 | 1.614763 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36350 | RBH | 0.130752 | 0.0 | 0.006696 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0848300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040270 | RBH | 0.114719 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039740 | RBH | 0.260918 | 0.000000 | 0.192658 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040140 | RBH | 0.503362 | 0.000000 | 0.263785 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039610 | RBH | 0.107660 | 0.053430 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039230 | RBH | 3.439133 | 2.085201 | 1.004835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0602300 | RBH | 2.019338 | 0.7434085 | 0.7954575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038920 | RBH | 0.377243 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0600000 | RBH | 1.5471065 | 0.6541565 | 1.513704 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046760 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039200 | RBH | 0.236609 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039440 | RBH | 5.875443 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039430 | RBH | 0.337003 | 0.144159 | 0.482576 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039310 | RBH | 0.411015 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039770 | RBH | 0.314488 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039440 | RBH | 0.000000 | 0.000000 | 2.340106 |
