Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g61830 | OGI:01106820 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:35767582-35772377 | ||||||||
| Gene Symbol | C3H11, OsC3H11, DLN25, OsDLN25 | ||||||||||
| DNA seq | AGTCCACCACCATCTCTAGAACTTTCCATCTCGCCTCCGCCTCCGCCTCCGCCTCCCCCCACCTCCTAAGCTCCAAACCCAAGAAACCCTCCTCCTCCGCCGCCCGCCGCCCAATCCGACCCGCCGGAGCGCGAAGGGAGAAACAGGGCAGCCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAGGATGCCGCCGAAGAAGGCAGCGCCATCGAAGGCGGACCTGGCCAAGAAGCAGAAGGTCGTGGAGGACAAGACGTTCGGGCTCAAGAACAAGAACAAGAGCAAGAACGTCCAGAAGTACGTCCAGTCCCTGCATCAGGCCGTCCAGCCCAAGCCCGACCCGACCAAGACCGCCGCCAAGGCACGCAGGATGCTCAGATCGAAGCTCTTCTTACCCTATTTTTCGATTGCTTTGCTTCTCTGATGTTCGTTGTTTTTTTTTTCTGTTTGCTGTGGATGTGGATGCGCAGAAGAAGAAGGAGGAGGAGAAGGCGCGCGAGAAGGAACTCAATGATCTATTCAAGGTCGCCGTCAGCCAGCCCAAGGTCCCAGTTGGTATGGCCTCCTCTCCACCTTGTCATCACCCAGTCTTTATGTGTGTATGTCTCCCTCGATTTAGGGTTGAGCAAATAGATTTAGGCGCACTGAGTTGTATTTGTTATGCTCATGTACTTAATGTGAATCAGTGAGTTTGTATGTGATTGATGTGCTGTATTGGGTGAATCTCATCAGGTCAATATGGAAAAAAGGAGTATATGTCCATATAATCTCTATTCGATAGGATAACAGTTGTGGTATGGTAGTGTTTCTAATTGTATTGGTGCTGATTGATGCTAATGCTGCTAAGGTTTGATTGATTTGTTCAAAGCTGTACATTGTGAGCACATTGGGGCTAAAACAAGCTGTACGTAGAGGAAGCATAGCTTCACTAGGATGAGCACAGCTTGGTATTTTTGTAAGATGTTGCAACTCATATGCTGGTTACGATGATGATGACATACATTTTATTATGCAGGTGTCGATCCCAAGTCCATAGTGTGTGAATTCTTTAAGGTTGGCCAGTGCCAGAAGGGTTTTAAGTGCAAGTTCTCACATGACCTTAATGTCCAAAGAAAGGGTGAAAAGATTGATATTTACACTGACAAGCGTGATGCAGGTAAAATACACTGATATGGGTTTTAATTGCTATTTTTGTACTATTTGTCCATAATTCGTCAGTTCATCTGTGAAGATTCTCATATGCTTTTTCATGGCAGAAACCATGGAAGACTGGGACCAGGAGACTCTTGAGAAGGTTGTTGCGTCAAAAGGAGCAGAGTACCAGCAGAATAAACCTACTGATATTGTATGCCCTACTCAACATATTGCCTGTGATCCAATCATTTTAAGTCATCCCCATTGTGTGAATGTGTGGCATGTCATTTTCCAACTTGTTATGAATGAATTAAAGGTTCTAGTATTTTGCTTCTTTTTTGTAAATATTTGTGCTAGGCAGTGCTTCACTGCTTCTATATTTGCTTTTGCTTCTTGTGTTGTGTCTTCTAATGCATGATAATTGGATACTCAAATCTGACCATGAAACAGTTATGTTTTACAATTTACACAGACCATCTTATGGTTAGCATCATTTTATCCTCTGAATATATGTTGCATACAGCAGTTATTAGGGTGTCCTCTTGGTCATATCGTTAGCAAGCCACCTGTGTTGATTTTAGTTCTGAATGCACCTGGAACAACTAGAGGAAAATCTGACATATGTCATGTTGCAACAGTGGTTAACATGATATGGTGTGATGAATTGGCATGGTGGGACTCTTTCTTAGTTGCAGCTCATGATATGGTATGATGAATTGCTGCGTTTGTTCCTTGCATTTGGGAACTAATCTCCCACGCACGGAAAACGGAGTGACTCATTAGTGCATAATTAATTATTAGTTTTTTTTAAAAAATGGAATAATATGATTTTTTAAAGCAACTTTCGTATAGAAATATTTTTGTAAAAAAACACATCGTTTAACAGTTTGAAAAGTGTGCGCACGGAAAATGAGGGAGATGAGTTGGGAAAGTAAGCTGCCGAACACAGCCTAAGTAGTCTTACTGTCATTCCACCATTGCTCTTTACTTACTAGGATTCTGTGTGGCAATTTGGCTATGTACATAGTTTCGCAATGTGCATGATGCAACATCATTTTTAAGTAATAGCTTTCACCTATAAGTTATAGAAGCCATTAAGATTCTAGTCTAATAAATGTTTGTTGATTATTTCATTCCTTACAAAATGCTAGCCTAACCTATTGAATGCCAATATATTGGCAGTGAGGGAAGTTTGATGATGCACAGTTTGAAAATATAGTAAATTAACAAGCTATGATTATGCTCTGATGCATTTGCATCTGTTCTAACAAGTCATATTTATTGTCTTCATTGCATTGCTGCTACGATTTACAAAATCAGTTTTCTGTTTCTTTATGCTGTATCTGTTGCATTTGTAACTTGTATTGCCTTCTTTACTCTCTCTCTCTCTCTCTCTCTCTCCTGGAAGATGAATTTATGTAGCAGTGAAACCATAAGAACTCCTTTTGTTTTGCAAGCTGAAAGATGTTGTCTTCAAACATGATGTTGATTTGGTAATTCTTTTGTCTTGTAGGTTTGCAAGTACTTTCTTGATGCCGTGGAGAAGAAACAGTACGGTTGGTTTTGGGTTTGCCCAAATGGGGGCAAAGATTGCCACTACAGGCATGCACTTCCACCTGGCTATGTACTGAAGTCCCAAATGAAGGCCTTATTGGAGGAAGAGAGTGAAAAGATTGCTATCGAAGATGAGATTGAAGATCAGGTAGAATTACGATCAACAGTCAAAATTGTTCTGTCTGGAATATTGAATTTTGTTGTCTTCTTTCCACTTGTTCACTATTATGACGATCTGTTGCCATGTCCATCTAACAGCGTAAAAAGGTAAAAACAACAACTCCTATGACCACAGATTTATTCATGGAATGGAAAAGGAAGAAGGCAGAAGAAAGAGAAGCTGGTCTGGCTGCCTTGAGGGCAGAGAGGGCTAAGAATGATCGCATGAGGTAGTATTTGCTCCTATTAGTTTATCGTTTTGAGCTCTCGAGGCTTGAGGTACTTACTGTGATAGTATTTGCTATTGTGTCCAGTGGCCGTGAGCTGTTCATGGCTGATTCAAGTGTGTTCGTTGATGATGCTGAAGCATATGATGTATATGAAAGACAGGAAGAATCAGAGGCTAATGAAGAACCGGTAAATTTTCATTCATGTGCTATAATATTTGCTCCTAACAAATTGTTTGATTAATGTTACAACTAAAGATTGAAAGTACTAATTGTTTGAGGGAGCAGAAAAGGCCCAGATACCCTCCCCCAAAGATTCTAAAGTTATATAATGGAACTATCAGTTTTGGCAGATACACCTTGAACTTAAAATTATTTGGGGAGCACTCCTTTTGTATTCCCTTTGTTATTTTCAAGACTATTGACATGCCTGAATCACAAGTGGGTTGTAGATACCCAATCAGAACATATGTTGGGCTGTTGTCCTTCACATATCTGAAATCAAGTCTATGGAAAAATGAAACATCTTTTTAGGCACTTTTACAGAAGGCGGTAACTGTATCTATGCTCGATCGCCTCCTGAGAAATTAAATGAATAGGACAAACTTCCAATAAAGAAGTAATCTGAATCTTATGCCAAACTGATTTTTTCTTCTTCCATGAATGTACTTAGGTTTATTTGTTGGCGTGACACTTCGTAGTGAGATTATTTTCTTAGCTTATTTGAATGTATTTATTGTGCCTGAAACACCTGTATGCGTTGAAGTTGAATAGGTATGCCTGGATAGAATGGTCAACATGAAATACACATATCATGTATCCATGTCACGTTGTTATGTTCAGTTCAACTCATTGTTTTCAGTAAACTTGGTATCGCGATGCGGATTGTAGTATCATGCAAATTGAATACCAATATAACTACATATAACTGAATACCAATATTAAATTCAAATTGAAACAAAAGACATCTCATAGGATCCCAATCCTATGGTCCGATTTTGCTTGGAGAAAAGCGACCCTACCTATGATCCTAATCCTAACAACTTTGGTTCCTTCAACCCCCCAAAATAATTTTGTTCCTTTATATTTTCCGCTTGAAAGGGATTTTGGCAGATAGTAGATAAGTGCAGGCTGCTCTGTGGCAATTCAATGAATGTGTTACATATATTTTTATTTCCATGTTGCAGAGCAATAAAAACCAGGATGAGGGGCCAAGTTCATCAACTTCTAATGGCAAGGAGGTGGAAGAGTCCGATGATGAAGATATAAATATTGATGATGACCTGGACATTGATGAGTTAAACGAGCTTGAAGCAAGCCTGTCAAGAACTTCCATTCAGATTCGAGAACCTGGCGAGGGAACATCATCTTGAGCAGTAACACTCTGGACTGGAAGGCCATTGAGAAGTAGAACACCATTTTTGCGCCTTAAATTGCCTACTTGCTTTAGAAACAAAAAAGGTGGAAGGTGGAGCATAGATGCAAGTGCAATTTGTTTCAACCAGACTGATCATCTATCCATGATTAGTGAATGATGCTCAGTGCTGTTATGACATGACAATTGATTTTTTGACGCATCTGCCCTTTATATTATCTTTGCGGGAGTTACGTTGCTACTTGTGAATAACATGACTACTTTTTGGCCTCGTGCACACTATAACCGATTTTTGATGTGAAACATTGCCATAAGTTCATCAGGTT
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| CDS seq | ATGCCGCCGAAGAAGGCAGCGCCATCGAAGGCGGACCTGGCCAAGAAGCAGAAGGTCGTGGAGGACAAGACGTTCGGGCTCAAGAACAAGAACAAGAGCAAGAACGTCCAGAAGTACGTCCAGTCCCTGCATCAGGCCGTCCAGCCCAAGCCCGACCCGACCAAGACCGCCGCCAAGAAGAAGAAGGAGGAGGAGAAGGCGCGCGAGAAGGAACTCAATGATCTATTCAAGGTCGCCGTCAGCCAGCCCAAGGTCCCAGTTGGTGTCGATCCCAAGTCCATAGTGTGTGAATTCTTTAAGGTTGGCCAGTGCCAGAAGGGTTTTAAGTGCAAGTTCTCACATGACCTTAATGTCCAAAGAAAGGGTGAAAAGATTGATATTTACACTGACAAGCGTGATGCAGAAACCATGGAAGACTGGGACCAGGAGACTCTTGAGAAGGTTGTTGCGTCAAAAGGAGCAGAGTACCAGCAGAATAAACCTACTGATATTGTTTGCAAGTACTTTCTTGATGCCGTGGAGAAGAAACAGTACGGTTGGTTTTGGGTTTGCCCAAATGGGGGCAAAGATTGCCACTACAGGCATGCACTTCCACCTGGCTATGTACTGAAGTCCCAAATGAAGGCCTTATTGGAGGAAGAGAGTGAAAAGATTGCTATCGAAGATGAGATTGAAGATCAGCGTAAAAAGGTAAAAACAACAACTCCTATGACCACAGATTTATTCATGGAATGGAAAAGGAAGAAGGCAGAAGAAAGAGAAGCTGGTCTGGCTGCCTTGAGGGCAGAGAGGGCTAAGAATGATCGCATGAGTGGCCGTGAGCTGTTCATGGCTGATTCAAGTGTGTTCGTTGATGATGCTGAAGCATATGATGTATATGAAAGACAGGAAGAATCAGAGGCTAATGAAGAACCGAGCAATAAAAACCAGGATGAGGGGCCAAGTTCATCAACTTCTAATGGCAAGGAGGTGGAAGAGTCCGATGATGAAGATATAAATATTGATGATGACCTGGACATTGATGAGTTAAACGAGCTTGAAGCAAGCCTGTCAAGAACTTCCATTCAGATTCGAGAACCTGGCGAGGGAACATCATCTTGA
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| Protein seq | MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEESEKIAIEDEIEDQRKKVKTTTPMTTDLFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDDAEAYDVYERQEESEANEEPSNKNQDEGPSSSTSNGKEVEESDDEDINIDDDLDIDELNELEASLSRTSIQIREPGEGTSS |
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| Function | Zinc finger CCCH domain-containing protein 11 [UniProtKB/Swiss-Prot:Q0JHZ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g61830 | LOC_Os01g61830.1 | Chr01 | 35767582 | 35772377 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGCCGAAGAAGGCAGCGCCATCGAAGGCGGACCTGGCCAAGAAGCAGAAGGTCGTGGAGGACAAGACGTTCGGGCTCAAGAACAAGAACAAGAGCAAGAACGTCCAGAAGTACGTCCAGTCCCTGCATCAGGCCGTCCAGCCCAAGCCCGACCCGACCAAGACCGCCGCCAAGAAGAAGAAGGAGGAGGAGAAGGCGCGCGAGAAGGAACTCAATGATCTATTCAAGGTCGCCGTCAGCCAGCCCAAGGTCCCAGTTGGTGTCGATCCCAAGTCCATAGTGTGTGAATTCTTTAAGGTTGGCCAGTGCCAGAAGGGTTTTAAGTGCAAGTTCTCACATGACCTTAATGTCCAAAGAAAGGGTGAAAAGATTGATATTTACACTGACAAGCGTGATGCAGAAACCATGGAAGACTGGGACCAGGAGACTCTTGAGAAGGTTGTTGCGTCAAAAGGAGCAGAGTACCAGCAGAATAAACCTACTGATATTGTTTGCAAGTACTTTCTTGATGCCGTGGAGAAGAAACAGTACGGTTGGTTTTGGGTTTGCCCAAATGGGGGCAAAGATTGCCACTACAGGCATGCACTTCCACCTGGCTATGTACTGAAGTCCCAAATGAAGGCCTTATTGGAGGAAGAGAGTGAAAAGATTGCTATCGAAGATGAGATTGAAGATCAGCGTAAAAAGGTAAAAACAACAACTCCTATGACCACAGATTTATTCATGGAATGGAAAAGGAAGAAGGCAGAAGAAAGAGAAGCTGGTCTGGCTGCCTTGAGGGCAGAGAGGGCTAAGAATGATCGCATGAGTGGCCGTGAGCTGTTCATGGCTGATTCAAGTGTGTTCGTTGATGATGCTGAAGCATATGATGTATATGAAAGACAGGAAGAATCAGAGGCTAATGAAGAACCGAGCAATAAAAACCAGGATGAGGGGCCAAGTTCATCAACTTCTAATGGCAAGGAGGTGGAAGAGTCCGATGATGAAGATATAAATATTGATGATGACCTGGACATTGATGAGTTAAACGAGCTTGAAGCAAGCCTGTCAAGAACTTCCATTCAGATTCGAGAACCTGGCGAGGGAACATCATCTTGA
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| Protein seq | MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEESEKIAIEDEIEDQRKKVKTTTPMTTDLFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDDAEAYDVYERQEESEANEEPSNKNQDEGPSSSTSNGKEVEESDDEDINIDDDLDIDELNELEASLSRTSIQIREPGEGTSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.109838 | 2.402111 | 2.136312 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0834700 | RBH | 3.119078 | 3.480727 | 8.269219 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0834700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0039290 | RBH | 0.970262 | 13.578815 | 9.279119 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038760 | RBH | 0.151647 | 6.362687 | 3.472264 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039180 | RBH | 2.829110 | 10.888477 | 12.977367 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0038650 | RBH | 0.147459 | 0.596638 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0038240 | RBH | 14.493536 | 41.772652 | 22.081697 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0591300 | RBH | 8.5096625 | 11.606349 | 18.5641765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0037910 | RBH | 0.299010 | 2.711063 | 2.315858 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0588500 | RBH | 13.1705655 | 11.3577045 | 17.3341075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0038230 | RBH | 0.229632 | 0.830427 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0038200 | RBH | 2.119630 | 49.340149 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038430 | RBH | 7.609829 | 28.341518 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0038460 | RBH | 2.638880 | 1.465821 | 1.349569 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0038280 | RBH | 0.230841 | 8.738164 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G038790 | RBH | 0.583192 | 12.207075 | 4.683006 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0038470 | RBH | 0.000000 | 19.582001 | 13.727001 |
