Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g60010 | OGI:01103970 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:34689869-34691517 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGTCGCGCACACACACGAATCGCGAAGTTCGCGACCCGATTCCTCTCCGCCCGCCATGCTGCGGAGTCTCCTCGCGAGAGCAATCCCGCGATCCTCCGCCGCCGCCGCCACCACCCGCGGATTCACCGATCCGCGGAGCTTTCCTCTACTCTTTCGCGAAGGTTCGCGTCTCTCCACTTCGCAGGGCGGCATCGGCAATGGCGGCGGCGGCGGCGGCGGCGGCAATGGCGGTGATGGCGAGGAGGATGACCCCTTCTCGTTCGCGGACCTCCAGAAGCTGCCGCCGGACGTCGCGCGTGACGTGGAGGCCGTCGTCGGCGCGGCCGAGGGGTTCCATGCGGACGCCGCGCGGGCCAGGGGCCTCCTGGAGCGGTGCGGCGCCACGGCGTCCGAGCCGGTCGTGGTGGCCGTGCTGGACCGCCTCCGCAACAGCTGCGCCGCGGCGCACGCCGCGTTCCGGTGGGCCTCGGCGCAGCCAGGGTACGCGCCAGGGCGGCACGCGTGCCACTCCATGCTCGCCATCCTCGCGAAGCACCGCCGCTTCGACGACGCACGCGCCCTGCTCGACCAAATGCGCCGCTCGTCGCTTGCGTCTCCGGCCGCGGTGATGCTTCTCATCCGGCGCTACTGCGCTGCACGGGACGTCGCCGGCGCCGTCGCGGCGTTCCGTGCGCTCCCGAACCTTGGTTTCCGGCCTGGCGTCGCAGAGTTCCATGGCCTCCTGACCGCGCTTTGCCGGTACAAGAACGTCCAGGATGCGGAGCACCTGCTTCTGTCCAGCGAGAAGGAGTTCCCTTTCGAGACCAAGAGTTTTAACGTTGTGCTCAATGGCTGGTGCAACATGGTCCGCAGTGTGCGGGAGGCGAAGAGGTTTTGGAATGCCATGGAAATTAAGGGTATTAAGAGGGACGTGGTATCATATGGGAGTATGATTTCGTGCTTCTCGAAAGCCGGAAGTTTGGACACTGTCATGAAGCTCTTTAACCGCATGAAGGAGGCTGGTGTTATACCAGACAGGAAAATCTACAATGCAGTTGTCTACGCTCTCGCCAAGGGACAGTGTGTGAATGAGGCAAAGGCTCTTGTCCGGAGCATGGAGGAGAAGGGGGTTGCCCCAGACACGGCCACTTTCAACTCCCTCATTAGACCTCTTTGCAAGGCTCGTCAGGTTCAGGAGGCAAGGAAAATGCTTGATGACATGTTAGGGAGAGGGCTGTCACCTTCAGTGAGAACATTTCATGCGTTACTCGATGTGGCTAGAAGCCCCATTGAGGTGTTTGATCTGTTGGATAAGATGAAAGAATTGCAGTGTGACCCAGAGATGGACACTTTCATTATGTTGATCAGGAAATTCTGCCGGTGGAGGCAACATGACAGTGTGGAGAAGCTCTGGAGTGCAATGCCTGCAAATGGGCTAAGCCCTGATAGGAGTGCGTATATTGTATTGATACACGGTTTATTCCTTAATGGGAGACTGGAGGAGTCAGCAAAGTATTACGAAGAGATGAAAGCCAAGGGATTTCCACCTGAGAAGAAGACTGAAGAAATGATACAGGCTTGGCTTTCAGGCAGAGAGCTTGCCAAGGCTTCAGCTTCAGTGGGTTCAAGGGGTGGTTCTGTGTCTCTCAGATCAAATCCTCGAAAGTGA
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| CDS seq | ATGCTGCGGAGTCTCCTCGCGAGAGCAATCCCGCGATCCTCCGCCGCCGCCGCCACCACCCGCGGATTCACCGATCCGCGGAGCTTTCCTCTACTCTTTCGCGAAGGTTCGCGTCTCTCCACTTCGCAGGGCGGCATCGGCAATGGCGGCGGCGGCGGCGGCGGCGGCAATGGCGGTGATGGCGAGGAGGATGACCCCTTCTCGTTCGCGGACCTCCAGAAGCTGCCGCCGGACGTCGCGCGTGACGTGGAGGCCGTCGTCGGCGCGGCCGAGGGGTTCCATGCGGACGCCGCGCGGGCCAGGGGCCTCCTGGAGCGGTGCGGCGCCACGGCGTCCGAGCCGGTCGTGGTGGCCGTGCTGGACCGCCTCCGCAACAGCTGCGCCGCGGCGCACGCCGCGTTCCGGTGGGCCTCGGCGCAGCCAGGGTACGCGCCAGGGCGGCACGCGTGCCACTCCATGCTCGCCATCCTCGCGAAGCACCGCCGCTTCGACGACGCACGCGCCCTGCTCGACCAAATGCGCCGCTCGTCGCTTGCGTCTCCGGCCGCGGTGATGCTTCTCATCCGGCGCTACTGCGCTGCACGGGACGTCGCCGGCGCCGTCGCGGCGTTCCGTGCGCTCCCGAACCTTGGTTTCCGGCCTGGCGTCGCAGAGTTCCATGGCCTCCTGACCGCGCTTTGCCGGTACAAGAACGTCCAGGATGCGGAGCACCTGCTTCTGTCCAGCGAGAAGGAGTTCCCTTTCGAGACCAAGAGTTTTAACGTTGTGCTCAATGGCTGGTGCAACATGGTCCGCAGTGTGCGGGAGGCGAAGAGGTTTTGGAATGCCATGGAAATTAAGGGTATTAAGAGGGACGTGGTATCATATGGGAGTATGATTTCGTGCTTCTCGAAAGCCGGAAGTTTGGACACTGTCATGAAGCTCTTTAACCGCATGAAGGAGGCTGGTGTTATACCAGACAGGAAAATCTACAATGCAGTTGTCTACGCTCTCGCCAAGGGACAGTGTGTGAATGAGGCAAAGGCTCTTGTCCGGAGCATGGAGGAGAAGGGGGTTGCCCCAGACACGGCCACTTTCAACTCCCTCATTAGACCTCTTTGCAAGGCTCGTCAGGTTCAGGAGGCAAGGAAAATGCTTGATGACATGTTAGGGAGAGGGCTGTCACCTTCAGTGAGAACATTTCATGCGTTACTCGATGTGGCTAGAAGCCCCATTGAGGTGTTTGATCTGTTGGATAAGATGAAAGAATTGCAGTGTGACCCAGAGATGGACACTTTCATTATGTTGATCAGGAAATTCTGCCGGTGGAGGCAACATGACAGTGTGGAGAAGCTCTGGAGTGCAATGCCTGCAAATGGGCTAAGCCCTGATAGGAGTGCGTATATTGTATTGATACACGGTTTATTCCTTAATGGGAGACTGGAGGAGTCAGCAAAGTATTACGAAGAGATGAAAGCCAAGGGATTTCCACCTGAGAAGAAGACTGAAGAAATGATACAGGCTTGGCTTTCAGGCAGAGAGCTTGCCAAGGCTTCAGCTTCAGTGGGTTCAAGGGGTGGTTCTGTGTCTCTCAGATCAAATCCTCGAAAGTGA
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| Protein seq | MLRSLLARAIPRSSAAAATTRGFTDPRSFPLLFREGSRLSTSQGGIGNGGGGGGGGNGGDGEEDDPFSFADLQKLPPDVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLDRLRNSCAAAHAAFRWASAQPGYAPGRHACHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGAVAAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETKSFNVVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEARKMLDDMLGRGLSPSVRTFHALLDVARSPIEVFDLLDKMKELQCDPEMDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGFPPEKKTEEMIQAWLSGRELAKASASVGSRGGSVSLRSNPRK |
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| Function | Pentatricopeptide repeat-containing protein At5g15010, mitochondrial [UniProtKB/Swiss-Prot:Q9LFQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g60010 | LOC_Os01g60010.1 | Chr01 | 34689869 | 34691517 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGCGGAGTCTCCTCGCGAGAGCAATCCCGCGATCCTCCGCCGCCGCCGCCACCACCCGCGGATTCACCGATCCGCGGAGCTTTCCTCTACTCTTTCGCGAAGGTTCGCGTCTCTCCACTTCGCAGGGCGGCATCGGCAATGGCGGCGGCGGCGGCGGCGGCGGCAATGGCGGTGATGGCGAGGAGGATGACCCCTTCTCGTTCGCGGACCTCCAGAAGCTGCCGCCGGACGTCGCGCGTGACGTGGAGGCCGTCGTCGGCGCGGCCGAGGGGTTCCATGCGGACGCCGCGCGGGCCAGGGGCCTCCTGGAGCGGTGCGGCGCCACGGCGTCCGAGCCGGTCGTGGTGGCCGTGCTGGACCGCCTCCGCAACAGCTGCGCCGCGGCGCACGCCGCGTTCCGGTGGGCCTCGGCGCAGCCAGGGTACGCGCCAGGGCGGCACGCGTGCCACTCCATGCTCGCCATCCTCGCGAAGCACCGCCGCTTCGACGACGCACGCGCCCTGCTCGACCAAATGCGCCGCTCGTCGCTTGCGTCTCCGGCCGCGGTGATGCTTCTCATCCGGCGCTACTGCGCTGCACGGGACGTCGCCGGCGCCGTCGCGGCGTTCCGTGCGCTCCCGAACCTTGGTTTCCGGCCTGGCGTCGCAGAGTTCCATGGCCTCCTGACCGCGCTTTGCCGGTACAAGAACGTCCAGGATGCGGAGCACCTGCTTCTGTCCAGCGAGAAGGAGTTCCCTTTCGAGACCAAGAGTTTTAACGTTGTGCTCAATGGCTGGTGCAACATGGTCCGCAGTGTGCGGGAGGCGAAGAGGTTTTGGAATGCCATGGAAATTAAGGGTATTAAGAGGGACGTGGTATCATATGGGAGTATGATTTCGTGCTTCTCGAAAGCCGGAAGTTTGGACACTGTCATGAAGCTCTTTAACCGCATGAAGGAGGCTGGTGTTATACCAGACAGGAAAATCTACAATGCAGTTGTCTACGCTCTCGCCAAGGGACAGTGTGTGAATGAGGCAAAGGCTCTTGTCCGGAGCATGGAGGAGAAGGGGGTTGCCCCAGACACGGCCACTTTCAACTCCCTCATTAGACCTCTTTGCAAGGCTCGTCAGGTTCAGGAGGCAAGGAAAATGCTTGATGACATGTTAGGGAGAGGGCTGTCACCTTCAGTGAGAACATTTCATGCGTTACTCGATGTGGCTAGAAGCCCCATTGAGGTGTTTGATCTGTTGGATAAGATGAAAGAATTGCAGTGTGACCCAGAGATGGACACTTTCATTATGTTGATCAGGAAATTCTGCCGGTGGAGGCAACATGACAGTGTGGAGAAGCTCTGGAGTGCAATGCCTGCAAATGGGCTAAGCCCTGATAGGAGTGCGTATATTGTATTGATACACGGTTTATTCCTTAATGGGAGACTGGAGGAGTCAGCAAAGTATTACGAAGAGATGAAAGCCAAGGGATTTCCACCTGAGAAGAAGACTGAAGAAATGATACAGGCTTGGCTTTCAGGCAGAGAGCTTGCCAAGGCTTCAGCTTCAGTGGGTTCAAGGGGTGGTTCTGTGTCTCTCAGATCAAATCCTCGAAAGTGA
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| Protein seq | MLRSLLARAIPRSSAAAATTRGFTDPRSFPLLFREGSRLSTSQGGIGNGGGGGGGGNGGDGEEDDPFSFADLQKLPPDVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLDRLRNSCAAAHAAFRWASAQPGYAPGRHACHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGAVAAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETKSFNVVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEARKMLDDMLGRGLSPSVRTFHALLDVARSPIEVFDLLDKMKELQCDPEMDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGFPPEKKTEEMIQAWLSGRELAKASASVGSRGGSVSLRSNPRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0816000 | RBH | 0.0 | 0.044384 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0816000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038000 | RBH | 0.115206 | 2.824376 | 0.765381 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037440 | RBH | 0.077930 | 0.654538 | 0.158818 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0037850 | RBH | 0.0 | 0.0 | 0.402981 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037250 | RBH | 0.086809 | 0.107467 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036940 | RBH | 0.626601 | 0.0 | 2.064680 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0574200 | RBH | 0.5256495 | 1.112001 | 1.4509285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036640 | RBH | 0.058890 | 0.0 | 0.075012 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0570700 | RBH | 0.5699325 | 1.19436 | 3.6715115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036850 | RBH | 0.049922 | 0.073956 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036900 | RBH | 0.111017 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037190 | RBH | 0.0 | 0.290599 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0036960 | RBH | 0.0 | 0.843985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037490 | RBH | 0.0 | 1.253274 | 0.167222 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037170 | RBH | 0.0 | 7.217983 | 0.474569 |
