Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g58280 | OGI:01100820 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:33684778-33688225 | ||||||||
| Gene Symbol | OsSub8, SUB8 | ||||||||||
| DNA seq | ATCACAACATGGCTTTTCACTTCTCTTCTCGACTGTTTTCATCTTGCCTCCTATTTAGCTTTTGCCTGATGTTAATAAGAGCACATGGATCTCGCAGAGTATGGATGACACACTGAACTGCATTTCATTTCATAAAACTGATCCTGTTGGAATGCTAAAAATGTTTTATGTGACTCTCTAAATGTAGTTGTACATCGCCTACCTTGGTGAGAAGAAACATGATGATCCTACTCTTGTGACTGGTTCACACCATGACATGCTCAGCAGTATTATTGGAAGGTAACCTCAGAATTTCTTCTTTTGGCTTTCGAGTTTGTTTCTAGAGATTTCTTTTCTTTGAACCACTTGATTTAACAATATCAAATATCTCTATAATTGGTTATGATAATTTACTAATTGAATTTCAGTAAGGAGGAGGCCAAGGCTTCCATCACCTACAGCTACAAGCATGGCTTTTCAGGCTTTGCAGCAATGTTAACAGAAGACCAAGCTGAGGATCTGGCAGGTAGGCGGATTTTTAACTGACCTTTATTTGTAAATAGTTCATGTTAAAAGCCTTTTGCTATCAGTTAAGATAGATGACTAGAGGATTCAGTTCCGATGTATTCCTAGCATTGAATGGTAAAAAGAAATGGCATGTTCACTAATGTGCTTATCAATTTACCATTGCAAACTGCTTTCACTATCAGAAACTGCCTCTGTAAAGCAAATGCGTTCTCCCCCAAAAAGAAATGGCATGTTTATTAATGTGCTTTATTTTTTGAGATGCTTTTTTTTTTCATGTTCAGAATTACCTGAAGTTATCAGTATTACTCCAAATCAGAAGCATGAGCTAATGACCACCAGAAGCTGGGATTTCCTCGGGCTTAAAAATGAACCACCCAGTGAGTTTCTGCAAAGGAGCAACTATGGAGAAGACATAATTATTGGGATAATTGACACTGGTAAGTCCATCATTTTAATGGAATCAATTGTAAAAATCTTGACCTACAGAATTCTTCCAAAATTCCTCATGCATGAACATGTACATGGATGTACATTAAGTAGGACAACACATACTATTGATGCAGGTATTTGGCCTGAATCAAAAAGCTTCCATGACCACGGATATGATGCAATACCATCACGATGGAAGGGCGTCTGTCAACTAGGAGAGGCCTGGGGGCCCTCCAATTGCAGCAGGAAAATCATTGGTGCACGGTACTACGCGGCTGGCCTTGACAAAGCCAACTTCAAGAAGAATTACATGTCTGCCCGGGACAACAATGGCCATGGAACACACACAGCATCCACAGCAGCAGGTGTGGCAGTAGAGGGGGTTAACCTCCATGGCCTAGGAGCTGGGGTAGCACGTGGTGGTGCACCCCGAGCACGGCTTGCAGTTTATAAGGTTGGGTGGGAGGAGGGTGGTGCTGGTGGAGTATACCTCGCTACTGCCGCAGTACTAGCAGCTCTAGATGATGCTATCCATGATGGAGTCGATATCCTGTCCCTCTCACTTGGTGTTGATGAGAATTCATTTGGGGCACTCCATGCAGTCCAGAATGGGATTACTGTTGTTTATGCCGGGGGAAATAGAGGCCCTCGACCTCAAGTCCTTTATAACACAGCTCCTTGGGTCATTACAGTCGCAGCGAGCAAGATTGATCGATCTTTCCCAACTGCCATCACCCTGGGAAACAAGCAAACATTAGTGGTACATGAGACTCGTGATCTCTGTTAGAACCTTTGCTCCATGCAATCTTCCTCAAGAATTTACCACTCAAAAGTACATGCTTTTATATTTGCAGGGACAATCACTCTATTACAAGTTAAAGAACGATACAGAGAGCAGATTTGAATCACTTGTAAATGGTGGCAAGTATGTATAAAGTTAATGCCAGTTTCTGATTAACATCATTTACATACCAACTTATGTTTAGGTGTTGAAGCTTTTTGCCTGTGTCTACAGTTGTTCAAGGGAGGCGTTAAATGGCACAAGCATCAATGGAAAAGTTGTTCTATGCATTGAATTAACTTTTGGCCCGATAGGAAGAATTTTCAAAGATGTCTTTGCAGGCGTTATTCAGGGTGGGGCGTCTGGTCTTATCTTCGCTTTTTATACCACGGATGTTCTTTTGAGCACAGAAGATTGCAAGGGGATAGCCTGTGTTTTTGTTGACAATGAGATTGGATATCAAGTTGCAACATACATAGGCAGTGAAAGGTATGGATAAATATTTAACGACCCACCAAGCTCTAGCTGTATTTTCTCTGTAACTATTTAAACTCCCAAATAATTTTGCTTTATTTTTTATCCAGATTACCCACTGTTAAGATTGAGCCAGCAAGTAGTATTACAGGAAATCAGGTCCCCGCTCCAAAGGTGGCAATATTCTCCTCAAGAGGCCCATCCATCAAATACCCTACAGTTCTTAAGGTACAATCTGAAAGGAAGTACATACTGTTGGTCTTTATTTTAGTTAGGAAAATCTTTATACAGACATCAGATACCGTGCACCTTAAGATGATTTTATTCCACAGGAGCATTTCCTAACCATATTATATCTGCTTTAACAGCCTGACATAGCAGCTCCAGGAGTCAACATCTTAGCTGCCAAAGAAGATGCATATGTATTTAACTCAGGGACATCAATGGCAGCCCCACATGTAGCAGGCGTTGTGGCATTGCTTAAGGCTCTACATCCTCATTGGTCTCATGCTGCTCTCAAATCAGCAATTGTCACCACAGGTAAATTACTTGAGTGTGCTATCCACATGAAACAACTATATAGGTAAATCCACTCAACCATGAATTACTCTTTTTTGCATGCAAAAGCATCAACAAAGGACGAATATGACACGCCGATATTAGCAGAAGCGCTTCCTCGGAAAGTTGCTGACCCTTTCGATTATGGAGGAGGGAACATAAATCCTATTGGAGCTGCTGATCCTGGCCTAATTTATGACATCGATCCAAAGGATTACAACAAATTCTTCGCTTGTCAGATCAAGAAATATGAGATCTGTAACATTACGACATTGCCAGCCTATCACCTGAATCTGCCTTCTATATCTATACCAGACCTAAGGCATCCAATAAACGTACGACGAGCAGTCACTAATGTCGGGGAGGTGGATGCGGTTTACCAATCCTCTATAGAATCCCCCCTTGGAGTGAAGATGACTATCGAACCGCCTGTCCTAGTCTTCAATGCTAGCAAGAAAGTGCATGCCTTCAAGATTTGCATTACACCTCTGTGGAAAGTGCAGGGAGGCTACACATTCGGCAGCCTAACTTGGTACAATGAGCACCACACTGCAAGAATCCCAATTGCTGTCCGGATCACAATTCAAGACTTCTACGCTGATGTTGCTTAGTAATGAACATATTTCTAGACAATGTATACTCAGTAATAAACATGTAAACCAATAGCGCTTGCAATAAGAACAATTTGCTTCATTGTTC
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| CDS seq | ATGGCTTTTCACTTCTCTTCTCGACTGTTTTCATCTTGCCTCCTATTTAGCTTTTGCCTGATGTTAATAAGAGCACATGGATCTCGCAGATTGTACATCGCCTACCTTGGTGAGAAGAAACATGATGATCCTACTCTTGTGACTGGTTCACACCATGACATGCTCAGCAGTATTATTGGAAGTAAGGAGGAGGCCAAGGCTTCCATCACCTACAGCTACAAGCATGGCTTTTCAGGCTTTGCAGCAATGTTAACAGAAGACCAAGCTGAGGATCTGGCAGAATTACCTGAAGTTATCAGTATTACTCCAAATCAGAAGCATGAGCTAATGACCACCAGAAGCTGGGATTTCCTCGGGCTTAAAAATGAACCACCCAGTGAGTTTCTGCAAAGGAGCAACTATGGAGAAGACATAATTATTGGGATAATTGACACTGGTATTTGGCCTGAATCAAAAAGCTTCCATGACCACGGATATGATGCAATACCATCACGATGGAAGGGCGTCTGTCAACTAGGAGAGGCCTGGGGGCCCTCCAATTGCAGCAGGAAAATCATTGGTGCACGGTACTACGCGGCTGGCCTTGACAAAGCCAACTTCAAGAAGAATTACATGTCTGCCCGGGACAACAATGGCCATGGAACACACACAGCATCCACAGCAGCAGGTGTGGCAGTAGAGGGGGTTAACCTCCATGGCCTAGGAGCTGGGGTAGCACGTGGTGGTGCACCCCGAGCACGGCTTGCAGTTTATAAGGTTGGGTGGGAGGAGGGTGGTGCTGGTGGAGTATACCTCGCTACTGCCGCAGTACTAGCAGCTCTAGATGATGCTATCCATGATGGAGTCGATATCCTGTCCCTCTCACTTGGTGTTGATGAGAATTCATTTGGGGCACTCCATGCAGTCCAGAATGGGATTACTGTTGTTTATGCCGGGGGAAATAGAGGCCCTCGACCTCAAGTCCTTTATAACACAGCTCCTTGGGTCATTACAGTCGCAGCGAGCAAGATTGATCGATCTTTCCCAACTGCCATCACCCTGGGAAACAAGCAAACATTAGTGGGACAATCACTCTATTACAAGTTAAAGAACGATACAGAGAGCAGATTTGAATCACTTGTAAATGGTGGCAATTGTTCAAGGGAGGCGTTAAATGGCACAAGCATCAATGGAAAAGTTGTTCTATGCATTGAATTAACTTTTGGCCCGATAGGAAGAATTTTCAAAGATGTCTTTGCAGGCGTTATTCAGGGTGGGGCGTCTGGTCTTATCTTCGCTTTTTATACCACGGATGTTCTTTTGAGCACAGAAGATTGCAAGGGGATAGCCTGTGTTTTTGTTGACAATGAGATTGGATATCAAGTTGCAACATACATAGGCAGTGAAAGATTACCCACTGTTAAGATTGAGCCAGCAAGTAGTATTACAGGAAATCAGGTCCCCGCTCCAAAGGTGGCAATATTCTCCTCAAGAGGCCCATCCATCAAATACCCTACAGTTCTTAAGCCTGACATAGCAGCTCCAGGAGTCAACATCTTAGCTGCCAAAGAAGATGCATATGTATTTAACTCAGGGACATCAATGGCAGCCCCACATGTAGCAGGCGTTGTGGCATTGCTTAAGGCTCTACATCCTCATTGGTCTCATGCTGCTCTCAAATCAGCAATTGTCACCACAGCATCAACAAAGGACGAATATGACACGCCGATATTAGCAGAAGCGCTTCCTCGGAAAGTTGCTGACCCTTTCGATTATGGAGGAGGGAACATAAATCCTATTGGAGCTGCTGATCCTGGCCTAATTTATGACATCGATCCAAAGGATTACAACAAATTCTTCGCTTGTCAGATCAAGAAATATGAGATCTGTAACATTACGACATTGCCAGCCTATCACCTGAATCTGCCTTCTATATCTATACCAGACCTAAGGCATCCAATAAACGTACGACGAGCAGTCACTAATGTCGGGGAGGTGGATGCGGTTTACCAATCCTCTATAGAATCCCCCCTTGGAGTGAAGATGACTATCGAACCGCCTGTCCTAGTCTTCAATGCTAGCAAGAAAGTGCATGCCTTCAAGATTTGCATTACACCTCTGTGGAAAGTGCAGGGAGGCTACACATTCGGCAGCCTAACTTGGTACAATGAGCACCACACTGCAAGAATCCCAATTGCTGTCCGGATCACAATTCAAGACTTCTACGCTGATGTTGCTTAG
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| Protein seq | MAFHFSSRLFSSCLLFSFCLMLIRAHGSRRLYIAYLGEKKHDDPTLVTGSHHDMLSSIIGSKEEAKASITYSYKHGFSGFAAMLTEDQAEDLAELPEVISITPNQKHELMTTRSWDFLGLKNEPPSEFLQRSNYGEDIIIGIIDTGIWPESKSFHDHGYDAIPSRWKGVCQLGEAWGPSNCSRKIIGARYYAAGLDKANFKKNYMSARDNNGHGTHTASTAAGVAVEGVNLHGLGAGVARGGAPRARLAVYKVGWEEGGAGGVYLATAAVLAALDDAIHDGVDILSLSLGVDENSFGALHAVQNGITVVYAGGNRGPRPQVLYNTAPWVITVAASKIDRSFPTAITLGNKQTLVGQSLYYKLKNDTESRFESLVNGGNCSREALNGTSINGKVVLCIELTFGPIGRIFKDVFAGVIQGGASGLIFAFYTTDVLLSTEDCKGIACVFVDNEIGYQVATYIGSERLPTVKIEPASSITGNQVPAPKVAIFSSRGPSIKYPTVLKPDIAAPGVNILAAKEDAYVFNSGTSMAAPHVAGVVALLKALHPHWSHAALKSAIVTTASTKDEYDTPILAEALPRKVADPFDYGGGNINPIGAADPGLIYDIDPKDYNKFFACQIKKYEICNITTLPAYHLNLPSISIPDLRHPINVRRAVTNVGEVDAVYQSSIESPLGVKMTIEPPVLVFNASKKVHAFKICITPLWKVQGGYTFGSLTWYNEHHTARIPIAVRITIQDFYADVA |
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| Function | Subtilisin-like protease SBT3.8 [UniProtKB/Swiss-Prot:Q9SZY3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g58280 | LOC_Os01g58280.1 | Chr01 | 33684778 | 33688225 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTTTTCACTTCTCTTCTCGACTGTTTTCATCTTGCCTCCTATTTAGCTTTTGCCTGATGTTAATAAGAGCACATGGATCTCGCAGATTGTACATCGCCTACCTTGGTGAGAAGAAACATGATGATCCTACTCTTGTGACTGGTTCACACCATGACATGCTCAGCAGTATTATTGGAAGTAAGGAGGAGGCCAAGGCTTCCATCACCTACAGCTACAAGCATGGCTTTTCAGGCTTTGCAGCAATGTTAACAGAAGACCAAGCTGAGGATCTGGCAGAATTACCTGAAGTTATCAGTATTACTCCAAATCAGAAGCATGAGCTAATGACCACCAGAAGCTGGGATTTCCTCGGGCTTAAAAATGAACCACCCAGTGAGTTTCTGCAAAGGAGCAACTATGGAGAAGACATAATTATTGGGATAATTGACACTGGTATTTGGCCTGAATCAAAAAGCTTCCATGACCACGGATATGATGCAATACCATCACGATGGAAGGGCGTCTGTCAACTAGGAGAGGCCTGGGGGCCCTCCAATTGCAGCAGGAAAATCATTGGTGCACGGTACTACGCGGCTGGCCTTGACAAAGCCAACTTCAAGAAGAATTACATGTCTGCCCGGGACAACAATGGCCATGGAACACACACAGCATCCACAGCAGCAGGTGTGGCAGTAGAGGGGGTTAACCTCCATGGCCTAGGAGCTGGGGTAGCACGTGGTGGTGCACCCCGAGCACGGCTTGCAGTTTATAAGGTTGGGTGGGAGGAGGGTGGTGCTGGTGGAGTATACCTCGCTACTGCCGCAGTACTAGCAGCTCTAGATGATGCTATCCATGATGGAGTCGATATCCTGTCCCTCTCACTTGGTGTTGATGAGAATTCATTTGGGGCACTCCATGCAGTCCAGAATGGGATTACTGTTGTTTATGCCGGGGGAAATAGAGGCCCTCGACCTCAAGTCCTTTATAACACAGCTCCTTGGGTCATTACAGTCGCAGCGAGCAAGATTGATCGATCTTTCCCAACTGCCATCACCCTGGGAAACAAGCAAACATTAGTGGGACAATCACTCTATTACAAGTTAAAGAACGATACAGAGAGCAGATTTGAATCACTTGTAAATGGTGGCAATTGTTCAAGGGAGGCGTTAAATGGCACAAGCATCAATGGAAAAGTTGTTCTATGCATTGAATTAACTTTTGGCCCGATAGGAAGAATTTTCAAAGATGTCTTTGCAGGCGTTATTCAGGGTGGGGCGTCTGGTCTTATCTTCGCTTTTTATACCACGGATGTTCTTTTGAGCACAGAAGATTGCAAGGGGATAGCCTGTGTTTTTGTTGACAATGAGATTGGATATCAAGTTGCAACATACATAGGCAGTGAAAGATTACCCACTGTTAAGATTGAGCCAGCAAGTAGTATTACAGGAAATCAGGTCCCCGCTCCAAAGGTGGCAATATTCTCCTCAAGAGGCCCATCCATCAAATACCCTACAGTTCTTAAGCCTGACATAGCAGCTCCAGGAGTCAACATCTTAGCTGCCAAAGAAGATGCATATGTATTTAACTCAGGGACATCAATGGCAGCCCCACATGTAGCAGGCGTTGTGGCATTGCTTAAGGCTCTACATCCTCATTGGTCTCATGCTGCTCTCAAATCAGCAATTGTCACCACAGCATCAACAAAGGACGAATATGACACGCCGATATTAGCAGAAGCGCTTCCTCGGAAAGTTGCTGACCCTTTCGATTATGGAGGAGGGAACATAAATCCTATTGGAGCTGCTGATCCTGGCCTAATTTATGACATCGATCCAAAGGATTACAACAAATTCTTCGCTTGTCAGATCAAGAAATATGAGATCTGTAACATTACGACATTGCCAGCCTATCACCTGAATCTGCCTTCTATATCTATACCAGACCTAAGGCATCCAATAAACGTACGACGAGCAGTCACTAATGTCGGGGAGGTGGATGCGGTTTACCAATCCTCTATAGAATCCCCCCTTGGAGTGAAGATGACTATCGAACCGCCTGTCCTAGTCTTCAATGCTAGCAAGAAAGTGCATGCCTTCAAGATTTGCATTACACCTCTGTGGAAAGTGCAGGGAGGCTACACATTCGGCAGCCTAACTTGGTACAATGAGCACCACACTGCAAGAATCCCAATTGCTGTCCGGATCACAATTCAAGACTTCTACGCTGATGTTGCTTAG
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| Protein seq | MAFHFSSRLFSSCLLFSFCLMLIRAHGSRRLYIAYLGEKKHDDPTLVTGSHHDMLSSIIGSKEEAKASITYSYKHGFSGFAAMLTEDQAEDLAELPEVISITPNQKHELMTTRSWDFLGLKNEPPSEFLQRSNYGEDIIIGIIDTGIWPESKSFHDHGYDAIPSRWKGVCQLGEAWGPSNCSRKIIGARYYAAGLDKANFKKNYMSARDNNGHGTHTASTAAGVAVEGVNLHGLGAGVARGGAPRARLAVYKVGWEEGGAGGVYLATAAVLAALDDAIHDGVDILSLSLGVDENSFGALHAVQNGITVVYAGGNRGPRPQVLYNTAPWVITVAASKIDRSFPTAITLGNKQTLVGQSLYYKLKNDTESRFESLVNGGNCSREALNGTSINGKVVLCIELTFGPIGRIFKDVFAGVIQGGASGLIFAFYTTDVLLSTEDCKGIACVFVDNEIGYQVATYIGSERLPTVKIEPASSITGNQVPAPKVAIFSSRGPSIKYPTVLKPDIAAPGVNILAAKEDAYVFNSGTSMAAPHVAGVVALLKALHPHWSHAALKSAIVTTASTKDEYDTPILAEALPRKVADPFDYGGGNINPIGAADPGLIYDIDPKDYNKFFACQIKKYEICNITTLPAYHLNLPSISIPDLRHPINVRRAVTNVGEVDAVYQSSIESPLGVKMTIEPPVLVFNASKKVHAFKICITPLWKVQGGYTFGSLTWYNEHHTARIPIAVRITIQDFYADVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.548260 | 4.816734 | 0.031143 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0795200 | RBH | 6.688592 | 7.158452 | 0.122050 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58290 | RBH | 1.340706 | 0.758448 | 0.415055 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0795200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036660 | SBH | 0.109374 | 45.962090 | 1.169888 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036150 | RBH | 0.318028 | 7.883012 | 1.466575 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036520 | RBH | 0.155017 | 2.228694 | 1.142209 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035940 | RBH | 0.034081 | 0.051771 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035540 | SBH | 0.253903 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0556000 | SBH | 2.1398105 | 2.058033 | 4.0725985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0035280 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0552900 | SBH | 2.314852 | 11.575025 | 1.835868 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035410 | SBH | 0.082967 | 0.064399 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035460 | RBH | 0.0 | 0.461859 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035720 | RBH | 0.0 | 0.650577 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035790 | SBH | 0.0 | 0.302974 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035560 | SBH | 0.009298 | 1.984010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036050 | RBH | 0.000000 | 0.214938 | 0.201126 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0035770 | SBH | 0.000000 | 4.307582 | 0.842252 |
