Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g57730 | OGI:01100110 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:33382329-33384487 | ||||||||
| Gene Symbol | prx19 | ||||||||||
| DNA seq | GCTAAACTGCCAGCTGCCATCATGACAAGGCAGGACACATACATGTTCACGTTGTACTATATACATCCATGTTCACGCATATACACATACATGATTTGTCGTAGAACTTTTAAAAGATGCCGTATATATATATTTGCACCATGCCATACCGTGAAGAACAGGGTGAACGAAGAAAAAAAAGAGAGAAGGACTATTCTATGTGTTGATATACCTACAGTTTTTCTTTCCAGTTGTGAGAAAATTTCAGCGGGCGGTGAGCGTCAACGCCCCAACCACCTCGACCGATATATAGAATAATAACGCAACTCCACTGTGGTTGGCTAGCCCCCACGTTTGCCACGGCCACATGACGATTGATCGATCGAAGCGATTGCGCCAACTCGCACCCAACGAACCGCGCGCTGGCTCCGTCTACTCCCCCTTGCCTAGTCAACGTACGCGCCGCACACCTTCCTGATCTCGCCGTTGTCGCCGGTGAGCACCTCGATCCTCCCCATGTTGGTCATGGCCTCCGCGTAGTCCCTGAAGTACTCGTCCGTCGAATCCGCGGACGCCATCCTCTCCACGTACTGCTTGGTCCACTTGTCATTGAGGAGGGCCTGGTCGGAGACGAAGAGGCCCCTGTTTCTGTACACGTCCCGGTAGTAGCTCAGGTCGAACGTGTACGGGCTCCCCGGGTCCATGTCCACGTACGTCTTGTCGAAAGGGTCGCCGGCCACGCACGCCTTCCTCAGCTCCGGCGCGTACGCCGTGTTCAGCGACGGGTCCTGCCTCCCTTCCCCGCTGTAGTTGTACAGCCTGTCGCGCGCGAACGAGCCGCACTGCGCCCTCCCTATCGTGTGGCTCCCTGCGGAAAATCACGCACAAAATCACGCGCAAAATCGAGCAGAAATTGAAGCTGGTGAATGGATATTGTGTGTGCTTTTGCTCGCACTGACCAAAAGTACTACTGGACGCTGGTATTTGCGGTATTGCGTACCTGATAGGACGACGAGGTCCTTCCATCCCAGGTTCTTGACACTAAAGTAGATCTTGAGGTCGACAATGTTGGAGCCGGGCGGTGGGAGATCGTTGTCGGCGTCAATGGTACAGGACACCTTGCCGTCCCGGCGTCCGGTCTCCACCTGGTACCGTGGGCCGTTGCTCTGGTAAAACGAAGCCGCTCGTCAACGTACGTCGGGATGAACGATAATAAAGATCACGGCGATCGGATTATACTACTGATCTCGAATTAAAGTAGCCAGGGAGTTGGCGTCATTACCAGGAACACGGCGTCCCGCGCGGCCATGACGATGATGTCCGCACACGACACGGTCATCGGGCACTCATCTTCCAGCTTGGCCTTGATCCTTTCGATCTGTTCGTAGCCGCGGAGGCTGTAGCTCGAGTTGGCGTCCCTCTCCCCGATTTTTTCCCGCGATTTCAGCATGATGGACGCGTCACACCCCTGCACGCCACGCGAAGCCAAGCAAGCACAAACATATCATCAAAAACCCATCGTCCATTGATCAGCAGCACGCACCACGGCGACGCGACATCGACGCACGAGGGTTCGTCCCCGCGACGCCACGCGACATGATGAGAAACTGAGGAAGGGATCGAGCACGCGAGGCACGCACCCTGACGAAGCAGTCGTGGAGCATGAACCGCAGGAGCGCCGGCGCGAGGGTCCTGTCCTCCTGGACGATCTCCCTCATCTCGGCGAGCACCAGGTCCTCCGCCTGTGGGCACGTCTCGTGGTAGAACCCGATGGCGAGCCCGTCGTATCCAGGCACCGGCAGCCCGCTGCCCGAAACGGCGGCCGCGGTGGCGACGACGATGATCACCGCCCCGACGAGGACGCCCAACAATGCCATCCGGCCGGCCGAACTGGGCCGGACAACGAACCCTTCCTCCGGATCGAATTCGTCGTCGACGACGACGTTGCTCACCACGAATTAAACAAAGCCGCCGCTAGCTCAAGAGCGTTGAAAAGATCTCGAGCCGGCAGAAATCCAGGAGGAGAAGAAAGAAAGACGGAGCTGGAATGGGAACTGGACTTAAAAATTGGCTGCATTCCAGGCACCGGCCTCCCGCGAATACAAACTCTCCGGACGACTCGAGAATAAAGAAACAATGACAAAGGCCGCGGATAGGTAGGTGGGTGAGGTATCGCCTTC
More
|
||||||||||
| CDS seq | ATGGCATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTCGGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGACGTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAGGACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGGGGTGTGACGCGTCCATCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTACAGCCTCCGCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCCGATGACCGTGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTGAGCAACGGCCCACGGTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCATTGACGCCGACAACGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTTTAGTGTCAAGAACCTGGGATGGAAGGACCTCGTCGTCCTATCAGGGAGCCACACGATAGGGAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAGGCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGGCGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCTGAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCTCAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGAGTACTTCAGGGACTACGCGGAGGCCATGACCAACATGGGGAGGATCGAGGTGCTCACCGGCGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAG
More
|
||||||||||
| Protein seq | MALLGVLVGAVIIVVATAAAVSGSGLPVPGYDGLAIGFYHETCPQAEDLVLAEMREIVQEDRTLAPALLRFMLHDCFVRGCDASIMLKSREKIGERDANSSYSLRGYEQIERIKAKLEDECPMTVSCADIIVMAARDAVFLSNGPRYQVETGRRDGKVSCTIDADNDLPPPGSNIVDLKIYFSVKNLGWKDLVVLSGSHTIGRAQCGSFARDRLYNYSGEGRQDPSLNTAYAPELRKACVAGDPFDKTYVDMDPGSPYTFDLSYYRDVYRNRGLFVSDQALLNDKWTKQYVERMASADSTDEYFRDYAEAMTNMGRIEVLTGDNGEIRKVCGAYVD |
||||||||||
| Function | Peroxidase 56 [UniProtKB/Swiss-Prot:Q9LXG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g57730 | LOC_Os01g57730.1 | Chr01 | 33382329 | 33384487 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTCGGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGACGTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAGGACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGGGGTGTGACGCGTCCATCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTACAGCCTCCGCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCCGATGACCGTGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTGAGCAACGGCCCACGGTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCATTGACGCCGACAACGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTTTAGTGTCAAGAACCTGGGATGGAAGGACCTCGTCGTCCTATCAGGGAGCCACACGATAGGGAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAGGCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGGCGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCTGAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCTCAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGAGTACTTCAGGGACTACGCGGAGGCCATGACCAACATGGGGAGGATCGAGGTGCTCACCGGCGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAG
More
|
|||||||
| Protein seq | MALLGVLVGAVIIVVATAAAVSGSGLPVPGYDGLAIGFYHETCPQAEDLVLAEMREIVQEDRTLAPALLRFMLHDCFVRGCDASIMLKSREKIGERDANSSYSLRGYEQIERIKAKLEDECPMTVSCADIIVMAARDAVFLSNGPRYQVETGRRDGKVSCTIDADNDLPPPGSNIVDLKIYFSVKNLGWKDLVVLSGSHTIGRAQCGSFARDRLYNYSGEGRQDPSLNTAYAPELRKACVAGDPFDKTYVDMDPGSPYTFDLSYYRDVYRNRGLFVSDQALLNDKWTKQYVERMASADSTDEYFRDYAEAMTNMGRIEVLTGDNGEIRKVCGAYVD
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.378822 | 0.387025 | 0.088038 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0787000 | RBH | 0.744142 | 0.507892 | 0.353084 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g42000 | RBH | 0.000000 | 0.159544 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0787000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036210 | RBH | 0.0 | 37.439941 | 2.915158 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035710 | RBH | 0.0 | 8.939202 | 1.960627 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036090 | RBH | 0.000000 | 19.277714 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035490 | RBH | 0.000000 | 0.319879 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035240 | RBH | 0.0 | 13.456853 | 2.733048 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0551500 | RBH | 0.839855 | 26.3991365 | 0.2467205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034990 | RBH | 0.110831 | 1.628031 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0546900 | RBH | 0.882171 | 17.69372 | 0.534414 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035120 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035170 | RBH | 0.0 | 16.363773 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035400 | RBH | 0.0 | 19.015816 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035480 | RBH | 0.0 | 1.201394 | 0.104976 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035300 | RBH | 0.000000 | 5.383372 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035780 | RBH | 0.0 | 1.076481 | 0.628509 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0035440 | RBH | 0.0 | 7.441226 | 3.584635 |
