Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g56550 | OGI:01098000 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:32598081-32601810 | ||||||||
| Gene Symbol | OsTFIIF2-2, OsRAP30-2 | ||||||||||
| DNA seq | TATGCAGGGAAGAGTAGGTCAAGGTGTTTAATGATCATGAAAATCATCATGTTAGTTTGCCTAGAAGAGCTAAAATACATTATACACACAAATTTCAACATCCTTGTTTCTAAACTCTGATGGACACGAATATATCGAGTCCCCGAAATCTGGGTCTAAGATATGGCCGCCAGTAACACCAAAAGATGTATCGCTTGATGCGTACAAAATATGTTTCTCAAGAAACAAACTATAAACGAAGTATCCAAGATTTCCTTGAACGCAGCAAGTAACGGATTGGAGTCCACACTGGACGAGGACTCCTATCTAGTAGACCGAAGCATAAGACTTCTAAGTAGCAGTAGCATCAGCGTCCTCTGTAGATTTCTTGTATTCAGGCTTAAGTTCATGCGTCCCTTGATTTGGACCCCTTTTGTTGTAGAAACACAGATCATTCAATATCTCCTTCAAGAATTGCTGCACAGAAACAAGCCGGGAGAGTTGAGGCTTTGATATCAGAACATGCAATAACTAGAGTTGGTGCTAGCAATTTCTTAACAAATGCTCCACCCTCGGCATAATTAGGATAACTTGAGAAAAAATACCTCTGGTTGATCAGTTTCTTGCATGAGATTCTTAAGAGACCAATTCGGCTGCCTCTCAAAAAGCTTGAATAAGATATTTTCCAGTTCCCTGCGATCCCTTCTCGTTCTTTTCATGTCTGATGGTTTTACTGGTAGTGGCTTCTTCTCCTTCTGCTGGGAAAAAAAAACTTACAATAGATTATAGACCCTTCATTATAGATCTACATTGCCAATAGAAAGATTGGTTTAAAAAAAGTAAGTTAAAATGTTTCTGCGGAGCAGTTGATAGTTGAGGGGAAAAGGAACTGTGCTAGTTAACAGGATCCGATAAACTATCAACATAGGAAAAAAAATACATGAAACATGGCATTGTTATCTGAAGAAAGATTACTTTTGGACCAGAAGACATCAGACCCACCAAGCCAGGCAACGGCCTCATGCTCATTCCATTGTCATTCGCAAGTACCTAAAAACAGACAAGGGCAAAAGGTGAATCTGTACAATAAATACTTCTACCATATGAAGCAGATCAATATGGCATATATAATATCATAAAAACTCCTACCATCAATTTTCTATTTTTAATCATAGATTTTTGAGTCCTCTCACGACATAACTTCCCATAGTTCACAAGATTATCGCTGTGCGGTTCCATGTCAAATTTGTGCCCGACTTTCCCTTCGCATGAAAGCTTCCCTGTAACAAGGAGTTGATGATTTAGTGTATCAAATAAGTTAATACTATGTTTACAGAGCAAACAGATTGCAATCCATGTTATCTTCAAGCCGTGAAAAATACTATCAACACAAAGCCTTCCTAACCCAAATATGAAATGAAGAAGCATAGTCCTTCCCATAAGGTCGCTATAGCATATGTAGTAGAGGAGATTATACCACAATGACTTCAAAATACAGCAAATAAAATGCCAATAAGACTTTACAAGGTATAACACCAAAAAGAACTGAATGAAAAAATTGTTGAAATGGCAAGAACATGACAAAAGAAAATGTTTGTTGCCCTTGAACTTCTTCCACGTAACAGAATTAGCAAAGCTAAAACCAAAGAATTCATCAACCACATATGGGATATTCAATGTAGCATGATCCTGTGCCAACCAAATCTTTATGCAAACACCTATGTGATGAATGCACGTAAGATATGTCGGTAGACGCAAGCCATATGAAGTTTCCAGCAGACAGCAGAACTTCAAGGAGGTCCTCAGTAATGCAGAAATTGAGTAAATTAAGAATTGAAACATCAATAATGTGTTCCGATAAAAATTCCAGATCATATACAAACTTATAGAAAAAGAAGATAGTTTCATACGTTGAGAACACAGTTTCAATAGTGTATTAGAACAAAAAAAAATATTGATAGTAACAACATCAACGTTTGATGAAAAGCCAATATGTAGATAGTAATCAGAACCTGATCCAAGGCAATTACCCACAGACACCCCCATACAAATAGTGAGATCATAACCCAGAACTCTATAACTAAATGACCTCTCCCATCTGGCTCAGTGCATTAAAGTCTAGGAAAGTACGAATGCAGATTATATTTTACATATTCCCAGATGATATTCCAAAAATGGGCAATATGTATTTTTTTGTTGCTCACCCACCTAGTAGTGGTCGCATGACCTAAACAATCCAATTAAGCAGCCTAACCAGCAAGTATACAGTTACAGGTAGTGCACCAATTCCTTCGATATAGCTTAGTAATACGGCTTAGTAGACCATTTGAACAACGCTATTCCTAGACTGTATTTGGAATAAAAATGAACTGCACATCAACCATGAGAAATTGCTAGTGATAAAGTCTCACATATCAAAGGAGAAATACATGCAAGCATCGTAAATAAAGAGAAAGCCTGGTATTCTTACCTTGGTTGGATTCAGAAAAGACACACATTGGCACAAAATCCTTGAACATGTTCAAGGAGTAACTCTTTGGTGTATTGCCATTGCCTGTTTGAGCCATCTCCATCTTGAACTGTTATTTCACTAACAACATATAAGAAACAGGCACTGGGTGTGTGTACAAGTATAGAAGCCGTAAGTCAATTTCTACTATTATACAAGAATACAGAAAATGCAAATCCATGACAGTAGCTTCTGCTTTTAAGGCATGAACATATCTAAACGTCAAGGAAACAAGGATGTAATCCTAACTATGCTGCAACATAACAAATCATTTGAAGTTAATTACAAAGTTACATTCTGTTAAAACCTTTTAAGATTCATTTTGGTTTCAAACGCTCAAACAGTAGTTGGTTTATGCCTCCAAATTGCTTTGGGCTTTTCTCCCAAAAACTATAAGAAGAATTGTAGTATAATCATTTATCAAAGAAATATATTCTGCAACAACACATGTACTAATTGCTTGAATTCAAAAATGTTTAAGTTGCAACAAGATTGCTTAGCCACCATGGCCAGTGAAATACACAATACAGAGTTAACCAATGATGAGATGGAAATTGAAGCAAACTGTCTAGTGTTAGCATTTAAAAGCACAAAATCAATAGCAATGATCCATTGGTCTTGTTTTGGATTTCAGAATGTGGCAATCTATGATAAAGCAACCAATCAACTTAACCTTCCACATCAAACAGGTCCCCCAATCCAAATCAAACCGCTACATCTCGCCCCAACCATTGAACTACCCTAAAAATTGAAGCAGCATAATAGAAGGGGGAAACGAAACCACCCTCCACGTGCACGAATAAATCGACCGAGCGCACGGAACAGGAGCGAACAGCGTGGGCCGGGAGGAGAGACGGATCAACGGCTTGCCTGGAGCTGCTGATCTTCGGAGCGGAGCGGGTCGAGGGAGACGATGACCTTGGCGACGACGGGGTTAGGGTTCGCGTTGGAGTTGGAGTTGGCGCCAGCGGCGGCGTCCGAGGAGGAGGAGGAGGAGGCGGCGGCGGTGGCGGCCTCCTGCCAGGCGCGGGAGACGACGGTCGGGCACTTCATGAGCCACACGGAGCGGTCGGCCCGGGCCGTCTCCAGATTCTTCGCCTCCTCCGCCATCGCCGTGGGGATGGAGGCAGGAAACTCAGCTGAGTGAAATCCTTCCGGTTCGCTGGTTGTGTGGGTCGATGGGGGTGGTTCGGCGAGGAGGACGAGAAGGCGGAGAAATTGTGAGATTGGAGCAAATTGATC
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| CDS seq | ATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGACCGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAG
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| Protein seq | MAEEAKNLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVIVSLDPLRSEDQQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHKFDMEPHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGPKQKEKKPLPVKPSDMKRTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQFLKEILNDLCFYNKRGPNQGTHELKPEYKKSTEDADATAT |
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| Function | Transcription initiation factor IIF subunit beta [UniProtKB/Swiss-Prot:O94424] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g56550 | LOC_Os01g56550.1 | Chr01 | 32598081 | 32601810 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGACCGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAGAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAG
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| Protein seq | MAEEAKNLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVIVSLDPLRSEDQQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHKFDMEPHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGPKQKEKKPLPVKPSDMKRTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQFLKEILNDLCFYNKRGPNQGTHELKPEYKKSTEDADATAT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g56550 | LOC_Os01g56550.2 | Chr01 | 32598081 | 32601810 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGACCGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAAAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGCAGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAGAGGACGCTGATGCTACTGCTACTTAG
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| Protein seq | MAEEAKNLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVIVSLDPLRSEDQQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHKFDMEPHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGPKKEKKPLPVKPSDMKRTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQFLKEILNDLCFYNKRGPNQGTHELKPEYKKSTEDADATAT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g56550 | LOC_Os01g56550.3 | Chr01 | 32598081 | 32601810 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGAGGAGGCGAAGAATCTGGAGACGGCCCGGGCCGACCGCTCCGTGTGGCTCATGAAGTGCCCGACCGTCGTCTCCCGCGCCTGGCAGGAGGCCGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCGGACGCCGCCGCTGGCGCCAACTCCAACTCCAACGCGAACCCTAACCCCGTCGTCGCCAAGGTCATCGTCTCCCTCGACCCGCTCCGCTCCGAAGATCAGCAGCTCCAGTTCAAGATGGAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGGGAAGCTTTCATGCGAAGGGAAAGTCGGGCACAAATTTGACATGGAACCGCACAGCGATAATCTTGTGAACTATGGGAAGTTATGTCGTGAGAGGACTCAAAAATCTATGATTAAAAATAGAAAATTGATGGTACTTGCGAATGACAATGGAATGAGCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAATTTTTTTTTCCCAGCAGAAGGAGAAGAAGCCACTACCAGTAA
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| Protein seq | MAEEAKNLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVIVSLDPLRSEDQQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHKFDMEPHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGPKFFFPSRRRRSHYQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.908026 | 1.881505 | 1.603012 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0772200 | RBH | 4.171974 | 2.819788 | 6.236466 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43450 | RBH | 0.251073 | 0.120895 | 0.954173 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0772200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035280 | RBH | 1.281717 | 16.394094 | 7.915071 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0034790 | RBH | 0.214146 | 7.549988 | 4.906906 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035190 | RBH | 2.689327 | 22.252781 | 14.894047 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0034530 | RBH | 0.444625 | 0.628804 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034270 | RBH | 7.528842 | 12.145946 | 21.964201 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0539800 | RBH | 9.3209375 | 16.715579 | 20.4526185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034020 | RBH | 0.436153 | 0.685869 | 1.642571 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0536100 | RBH | 11.0258615 | 15.152727 | 18.621792 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034170 | RBH | 0.267083 | 0.092393 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034230 | RBH | 0.862804 | 19.751726 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0034470 | RBH | 8.089626 | 9.780894 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034540 | RBH | 1.376460 | 0.423298 | 2.443838 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034350 | RBH | 0.711075 | 6.020734 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G034820 | RBH | 1.227414 | 8.206717 | 3.708493 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0034480 | RBH | 3.659182 | 21.958176 | 15.170599 |
