Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g55240 | OGI:01095860 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:31795105-31797643 | ||||||||
| Gene Symbol | GA2OX3, OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4 | ||||||||||
| DNA seq | ACATGCACTTGCAGTCAGTGGTACAACACCACAGCAACGCACCACCGGCCATCAACCTCCTCTCCCCTGCTTCTCGCTCGCTCTCCTGCCCTGTTTCTTGGAGAAGTGAGCTTAAGTGAGAGCCTCTGTCCCTCGCACACGCTATTGGCCATGGTGGTTCTCGCTGGCCCGCCCGCCGTCGATCACATCCCGCTGCTGAGGTCGCCGGACCCCGGCGACGTCTTCTCCGGCGTGCCGGTCGTCGACCTCGGCAGCCCCGGCGCGGCGAGGGCCGTGGTGGACGCCTGCGAGCGGTACGGGTTCTTCAAGGTCGTCAACCACGGCGTGGCCACGGACACGATGGACAAGGCCGAGTCGGAGGCCGTCAGGTTCTTCTCCCAGACGCAGCCCGACAAGGACCGCTCCGGCCCGGCCTACCCGTTCGGGTACGGCAGCAAGCGGATCGGGTTCAATGGCGACATGGGGTGGCTCGAGTACCTCCTCCTCGCCCTCGACGACGCGTCGCTCGCCGACGCCTGCACCGTCCCGTCCTGCGCGGTCTTCCGGTGAGCCCTCAAAACCGACGGCGATATATAATATCAGCCCCGTCCGTTTCTCTCGGTTTTTTACCTAGTGTTTGACATGGTGCGCGCGCGTCATGCATGCAGGGCCGCTCTGAACGAGTACATCTCGGGGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGTCGGAGGGGCTGGGCATTGCGCAGGCGGACGCGCTGAGCGCGCTGGTGACGGCGGAAGGGAGCGACCAGGTGTTCCGCGTGAACCACTACCCGCCGTGCCGCGCGCTGCAGGGGCTCGGCTGCAGCGTCACCGGCTTCGGCGAGCACACCGACCCGCAGCTCGTCTCCGTGCTCCGCTCAAACGGCACGTCCGGCCTGCAGATCGCGCTCCGCGACGGCCAGTGGGTGTCCGTGCCCTCCGACCGCGACTCCTTCTTCGTCAACGTCGGCGACTCGTTGCAGGTACGTACGCGGTACAGCCCCGACCCTTGGCGCTGCCACGTGACACCAATTCCATCAACGCGCTACCTTCCTCTTTCTTTACCATACTTTTTCCTTTTTCCAGAATAATTCCCATTAAACTAGATGGTGTAGATTAAATTACTAAATTAAATGACGTGGACACGGCTGAAATGGCTGCGCCTAGTGAGCGGGTCAACCGGGACATCGTTCCAGTTCACATCGGTATTAAAAAGAAAGAATCATCATCTGGACGAATATACTAACCCAATTAAGACGAGACAAGCAAGAAAAGGAAAGGGGTTCACCTGCATGATAGCATATGGTACGATGGCCACAGCCCACACGGCAGGGACTGGGTTTCGTAGATAACTACGACACTCGAGACCCAATAACTGCCGCCACTAACGAGCAGATTCAGTACATGAACATATATATGTGTGTGTGTTAGGCATGAACACTTCTGTTATGCCTGCGTGGCATCTCATTGCGTCATCATGCACACACTCTTAAACACTTTGTGCACTTCCCATATACAGATGGACAATATTTCTTTATCCGTTAGCACAAGAAGCACAGATACGTTTGATTAATTTTTCGTGCTGACTATTACCGTATTACGCATGCTGATTATAACCGTATTACACATATGCTGATAGATATACATGTGGTTTCTTGGTCCTGTACAGGTTCTGACCAATGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAGGGTTTCCTTCATCTACTTTGGAGGGCCACCGTTAGCACAGAGGATTGCACCATTGCCACAGCTGCTGGGGGAGGGAGAGCAGAGCCTGTACAAGGAGTTCACATGGGATGAGTACAAGAAGGCTGCCTACAAATCAAGGCTTGGAGACAACAGGCTGGCCCAGTTTGAGAAGAAGTAGCTAGCTAGATGCCTAGCAACAGAACTGGCCGGTCAAGCAACAACGACTTTACTGCATGGCAGCTAGCTACCTTAGCTATGTCTCACGCACACGTACGGTACACCATGACCACGAGAAGATGAAGCTGCTTAAGAGAGAAAAAGAAAAGAAAATAAAAACAGGAAGAAGATAATAACTTCAAGATGCACAATGTACAGCCAGGTTGGATGGATAGCTAGATTTTTCTCGTGTGGCTAATCACCGTGTGTGGTGAGGTGGGCTCCTTTCCTGTTTCGGAATACTGATCGATGGATGAACAGCCTCCAATAGTTAATGTTAACCAAATATAGCACAACAAAGGGGTTCTTTTCTTCCTTTGGTTGTTTCTTTTTTCCTCTTGCCTTTGATTTTCTCGTCATGCTTTCTGAGCATTAATTATGTGTGCGTGTATTTCGGTATACGTAACGTACTTTTACCTATGTGTGTATAGTACGTGGCTTGTGTTAACAAGTAAATATTATAGTCTCTCTCTTTCGTTATGCAACTGACTTCTGCGCGGTCCAAATGCATTGATGGAGATATATCTATTGGTGTACAATGTCACCTTCAAGATTAATGAATTTTCATCACTCAGGATA
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| CDS seq | ATGGTGGTTCTCGCTGGCCCGCCCGCCGTCGATCACATCCCGCTGCTGAGGTCGCCGGACCCCGGCGACGTCTTCTCCGGCGTGCCGGTCGTCGACCTCGGCAGCCCCGGCGCGGCGAGGGCCGTGGTGGACGCCTGCGAGCGGTACGGGTTCTTCAAGGTCGTCAACCACGGCGTGGCCACGGACACGATGGACAAGGCCGAGTCGGAGGCCGTCAGGTTCTTCTCCCAGACGCAGCCCGACAAGGACCGCTCCGGCCCGGCCTACCCGTTCGGGTACGGCAGCAAGCGGATCGGGTTCAATGGCGACATGGGGTGGCTCGAGTACCTCCTCCTCGCCCTCGACGACGCGTCGCTCGCCGACGCCTGCACCGTCCCGTCCTGCGCGGTCTTCCGGGCCGCTCTGAACGAGTACATCTCGGGGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGTCGGAGGGGCTGGGCATTGCGCAGGCGGACGCGCTGAGCGCGCTGGTGACGGCGGAAGGGAGCGACCAGGTGTTCCGCGTGAACCACTACCCGCCGTGCCGCGCGCTGCAGGGGCTCGGCTGCAGCGTCACCGGCTTCGGCGAGCACACCGACCCGCAGCTCGTCTCCGTGCTCCGCTCAAACGGCACGTCCGGCCTGCAGATCGCGCTCCGCGACGGCCAGTGGGTGTCCGTGCCCTCCGACCGCGACTCCTTCTTCGTCAACGTCGGCGACTCGTTGCAGGTTCTGACCAATGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAGGGTTTCCTTCATCTACTTTGGAGGGCCACCGTTAGCACAGAGGATTGCACCATTGCCACAGCTGCTGGGGGAGGGAGAGCAGAGCCTGTACAAGGAGTTCACATGGGATGAGTACAAGAAGGCTGCCTACAAATCAAGGCTTGGAGACAACAGGCTGGCCCAGTTTGAGAAGAAGTAG
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| Protein seq | MVVLAGPPAVDHIPLLRSPDPGDVFSGVPVVDLGSPGAARAVVDACERYGFFKVVNHGVATDTMDKAESEAVRFFSQTQPDKDRSGPAYPFGYGSKRIGFNGDMGWLEYLLLALDDASLADACTVPSCAVFRAALNEYISGVRKVAVRVMEAMSEGLGIAQADALSALVTAEGSDQVFRVNHYPPCRALQGLGCSVTGFGEHTDPQLVSVLRSNGTSGLQIALRDGQWVSVPSDRDSFFVNVGDSLQVLTNGRFKSVKHRVVANSLKSRVSFIYFGGPPLAQRIAPLPQLLGEGEQSLYKEFTWDEYKKAAYKSRLGDNRLAQFEKK |
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| Function | Gibberellin 2-beta-dioxygenase 3 [UniProtKB/Swiss-Prot:Q8S0S6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g55240 | LOC_Os01g55240.1 | Chr01 | 31795105 | 31797643 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGGTTCTCGCTGGCCCGCCCGCCGTCGATCACATCCCGCTGCTGAGGTCGCCGGACCCCGGCGACGTCTTCTCCGGCGTGCCGGTCGTCGACCTCGGCAGCCCCGGCGCGGCGAGGGCCGTGGTGGACGCCTGCGAGCGGTACGGGTTCTTCAAGGTCGTCAACCACGGCGTGGCCACGGACACGATGGACAAGGCCGAGTCGGAGGCCGTCAGGTTCTTCTCCCAGACGCAGCCCGACAAGGACCGCTCCGGCCCGGCCTACCCGTTCGGGTACGGCAGCAAGCGGATCGGGTTCAATGGCGACATGGGGTGGCTCGAGTACCTCCTCCTCGCCCTCGACGACGCGTCGCTCGCCGACGCCTGCACCGTCCCGTCCTGCGCGGTCTTCCGGGCCGCTCTGAACGAGTACATCTCGGGGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGTCGGAGGGGCTGGGCATTGCGCAGGCGGACGCGCTGAGCGCGCTGGTGACGGCGGAAGGGAGCGACCAGGTGTTCCGCGTGAACCACTACCCGCCGTGCCGCGCGCTGCAGGGGCTCGGCTGCAGCGTCACCGGCTTCGGCGAGCACACCGACCCGCAGCTCGTCTCCGTGCTCCGCTCAAACGGCACGTCCGGCCTGCAGATCGCGCTCCGCGACGGCCAGTGGGTGTCCGTGCCCTCCGACCGCGACTCCTTCTTCGTCAACGTCGGCGACTCGTTGCAGGTTCTGACCAATGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAGGGTTTCCTTCATCTACTTTGGAGGGCCACCGTTAGCACAGAGGATTGCACCATTGCCACAGCTGCTGGGGGAGGGAGAGCAGAGCCTGTACAAGGAGTTCACATGGGATGAGTACAAGAAGGCTGCCTACAAATCAAGGCTTGGAGACAACAGGCTGGCCCAGTTTGAGAAGAAGTAG
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| Protein seq | MVVLAGPPAVDHIPLLRSPDPGDVFSGVPVVDLGSPGAARAVVDACERYGFFKVVNHGVATDTMDKAESEAVRFFSQTQPDKDRSGPAYPFGYGSKRIGFNGDMGWLEYLLLALDDASLADACTVPSCAVFRAALNEYISGVRKVAVRVMEAMSEGLGIAQADALSALVTAEGSDQVFRVNHYPPCRALQGLGCSVTGFGEHTDPQLVSVLRSNGTSGLQIALRDGQWVSVPSDRDSFFVNVGDSLQVLTNGRFKSVKHRVVANSLKSRVSFIYFGGPPLAQRIAPLPQLLGEGEQSLYKEFTWDEYKKAAYKSRLGDNRLAQFEKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.413733 | 0.742631 | 0.264047 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0757200 | RBH | 1.954459 | 1.106043 | 1.027505 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11150 | RBH | 0.123580 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0757200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034150 | RBH | 0.357178 | 0.0 | 0.757714 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033690 | RBH | 0.0 | 0.641266 | 4.477693 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034130 | RBH | 2.507981 | 2.658870 | 9.383945 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033400 | RBH | 0.042601 | 0.105477 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033150 | RBH | 0.0 | 5.140905 | 2.365518 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0527600 | RBH | 1.9934425 | 33.001112 | 27.893122 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032880 | RBH | 0.078328 | 0.000000 | 0.073491 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0523700 | RBH | 4.6903385 | 53.0291995 | 10.2559545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033080 | RBH | 0.0 | 0.249518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033140 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033360 | RBH | 1.403891 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033450 | RBH | 0.972994 | 0.200684 | 3.696482 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033240 | RBH | 0.0 | 1.240310 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033710 | RBH | 0.0 | 0.0 | 3.265693 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033330 | RBH | 0.000000 | 0.000000 | 6.074788 |
