Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g54980 | OGI:01095380 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:31612795-31614644 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACCCTCACCCCTTTCCCCAAACCCTAGCCGCCACCATTCCTCTGCCTCCTCTCCTCTCGCTCCGCTCTCTCTCCTGCCCAAGCGACGGCCGCCGCCGCGTGCCGTCCCCTCATCCTCTTCTTCCCGCAGTTGGCGACCTCCCCCGCGCACTCCCTACTGCGAGCTGTTGCTGTCGCCGCGCCGTCGTCCTGCCATCGCCATCCTCTCGCTCCCGCACCGCATCCGCCAACGAGGAGGCCGGGACTGTCGGATCCGGTGACTCCGGCCTCCTCGCCGGCAGATCCGGCCGCCCTGAAGCGAGGGGAAGCCAGGAGCCGCCTTCTACTCTTCTACCTCTATGCCCGGCACTGCCCCTCTCTCCCTCTCCCTCTCCCTCTCCATCCTGTTCATTTCCGGATCAACGGATGCCTGCGATTAGGCGGCCACGGACGTGCGTGTGGGACGTCGAGGAGACGGGGAATCACTGGATCCAGGAGGTCGGTGAACCGATTTGGAGAGGGAGCTGCATGATCTGTGGCATTGGTGTCCCGTTTCGGACAGCGGCGGTCTCCAGTACGGCGGGTGCTGCTGGATCTGCCGCATGGAGGGCTCCTCGTCAGCTCCATCCTACCTCTTCTTCTGCCTTTTTGGAAGGAGGTGAGGAGAGGAAAGTTTCCTCTGGAATTTCATACTGCATGTTATATCTTTGCCAAGTTGGTGGTCTTAGTGTGATACTGTGATTAATTTGGACCGATGAAGATATGTGTATTGAATTTTTCTTTGCAAGTTTAAATCAGTGTAACACTATGAATGTGAGCGTGTGAATGCAGCTTGTAGTGAAGCTTTGTTGAGCTTACGCAAAGCAGAGAAGGGCATCGGCGCGGGGTTCCTAGAGGATGCTGCCACCTCCATCCCCTTGCGTCACGGCCGTGCTGCCCTACTGGTCCTCTGGCACAGCATCTAAGGTCATCTGCCACCACAACCAGGTTGCATCTCCACCGAATGTGACCCCACTTTGATGGCGGCGAGCTTTGCTTTGGTAGTGTTGCTGTCAATTTGGCTGTGCATTTCTTTAAGGGGTTCATCTACGATCCATTGTAGCATGCAGATGACTTTAAATTACAAATGAGTTAATGCATAAGATTCTTTGTTTCCAAGTATAAGAAATTGATATATCTTTTGTTGAAGTATGAGTATGCTGATTTGTTCCAGCAAAATATAGCAATGTACAATATTTTTTGTGGATAATAATTTGATAATGCTCCATCCAAATGTAGTCATGCATCTTCATCAAAATAGATTGTGGCTTTGCATTTTTAGTTTGTTCATTACTAATTATGCCCCTTGAAGGTAGTGACTTCTATAAAATTAATTTATAACGAGCATGTTTGTAACTTGACATTAGATGACCTTTTACATGCAGAATCTGAGACTAAACGTATACACTAATCACACTAATCACTACTACTGCTGCTATATATTACTGTTGTACCAAAAATATACAAGTGCATTTGATAAAGGTTATACAGGTCTGGATCAGAACTGTATATTACTGTTGCACCAAAAATAAATTAATGAACTGTAATTTTCTCTGTATTATTTTTGGATGTGATTACTAAAGCTCGCTATGTGTCTGCTCTTTTTGCACTATAGATGTTATGTGGGGCATTCAGTATCAGCGCCGGAACCGACGCCAACAGCCAGAGCAGGCGCCGTGATGTTGGATCAAGTTGTTAGGATTAGTTTCAGTGATTAAGTTTGTTAGGAAGATTAAGTTGTTAGTTCCTGGTTAGTAGCTGTTTGGTTTTCCATTGTAAGCCTATATAGGCCATTCGGTTTAAGTGATTAATCAAGAAAGAAGTTAATCCCA
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| CDS seq | ATGCCTGCGATTAGGCGGCCACGGACGTGCGTGTGGGACGTCGAGGAGACGGGGAATCACTGGATCCAGGAGGTCGGTGAACCGATTTGGAGAGGGAGCTGCATGATCTGTGGCATTGGTGTCCCGTTTCGGACAGCGGCGGTCTCCAGTACGGCGGGTGCTGCTGGATCTGCCGCATGGAGGGCTCCTCGTCAGCTCCATCCTACCTCTTCTTCTGCCTTTTTGGAAGGAGCTTGTAGTGAAGCTTTGTTGAGCTTACGCAAAGCAGAGAAGGGCATCGGCGCGGGGTTCCTAGAGGATGCTGCCACCTCCATCCCCTTGCGTCACGGCCGTGCTGCCCTACTGGTCCTCTGGCACAGCATCTAA |
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| Protein seq | MPAIRRPRTCVWDVEETGNHWIQEVGEPIWRGSCMICGIGVPFRTAAVSSTAGAAGSAAWRAPRQLHPTSSSAFLEGACSEALLSLRKAEKGIGAGFLEDAATSIPLRHGRAALLVLWHSI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g54980 | LOC_Os01g54980.1 | Chr01 | 31612795 | 31614644 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCTGCGATTAGGCGGCCACGGACGTGCGTGTGGGACGTCGAGGAGACGGGGAATCACTGGATCCAGGAGGTCGGTGAACCGATTTGGAGAGGGAGCTGCATGATCTGTGGCATTGGTGTCCCGTTTCGGACAGCGGCGGTCTCCAGTACGGCGGGTGCTGCTGGATCTGCCGCATGGAGGGCTCCTCGTCAGCTCCATCCTACCTCTTCTTCTGCCTTTTTGGAAGGAGCTTGTAGTGAAGCTTTGTTGAGCTTACGCAAAGCAGAGAAGGGCATCGGCGCGGGGTTCCTAGAGGATGCTGCCACCTCCATCCCCTTGCGTCACGGCCGTGCTGCCCTACTGGTCCTCTGGCACAGCATCTAA
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| Protein seq | MPAIRRPRTCVWDVEETGNHWIQEVGEPIWRGSCMICGIGVPFRTAAVSSTAGAAGSAAWRAPRQLHPTSSSAFLEGACSEALLSLRKAEKGIGAGFLEDAATSIPLRHGRAALLVLWHSI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g54980 | LOC_Os01g54980.2 | Chr01 | 31612839 | 31614643 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCTGCGATTAGGCGGCCACGGACGTGCGTGTGGGACGTCGAGGAGACGGGGAATCACTGGATCCAGGAGGTCGGTGAACCGATTTGGAGAGGGAGCTGCATGATCTGTGGCATTGGTGTCCCGTTTCGGACAGCGGCGGTCTCCAGTACGGCGGGTGCTGCTGGATCTGCCGCATGGAGGGCTCCTCGTCAGCTCCATCCTACCTCTTCTTCTGCCTTTTTGGAAGGAGCTTGTAGTGAAGCTTTGTTGAGCTTACGCAAAGCAGAGAAGGGCATCGGCGCGGGGTTCCTAGAGGATGCTGCCACCTCCATCCCCTTGCGTCACGGCCGTGCTGCCCTACTGGTCCTCTGGCACAGCATCTAA
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| Protein seq | MPAIRRPRTCVWDVEETGNHWIQEVGEPIWRGSCMICGIGVPFRTAAVSSTAGAAGSAAWRAPRQLHPTSSSAFLEGACSEALLSLRKAEKGIGAGFLEDAATSIPLRHGRAALLVLWHSI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0753400 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43330 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0753400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033460 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033900 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033160 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032910 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0524900 | RBH | 0 | 0.7102135 | 0.0184545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032630 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0520200 | RBH | 0 | 0.904003 | 0.0910515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032880 | RBH | 0.406618 | 6.775269 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033120 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033210 | RBH | 0.242737 | 0.0 | 1.063903 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033470 | RBH | 0.534193 | 1.840703 | 2.370866 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033090 | RBH | 0.000000 | 0.000000 | 2.663928 |
